Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9434 105 5e-18 seq184 91.5 1e-13 seq87 87.8 1e-12 seq36 84.2 2e-11 >seq9434 Length=50679 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||| ||||| |||| | | | || || | ||| Sbjct 44735 TGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCCTCCAGTTGC 44794 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||| || ||||| ||||| ||||| ||||| |||||| Sbjct 44795 TTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATTTTA 44854 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| |||| || || ||||| |||||||| || ||| Sbjct 44855 GCCTTAACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCAGTC 44914 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 44915 AATGTCTTCACAAATATTTGCAT 44937 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || ||||| ||||| ||||| ||| | || | ||||| Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || ||||| | ||||| | || ||||| ||| ||||| || || || Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || ||||| || | || || || | ||||| ||||| Sbjct 45533 ATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTC 45592 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || ||||||||||||||| Sbjct 45593 CCAGTAAGGGTCTTGACAAAAATTTGCATA 45622 >seq184 Length=120086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || || ||||||||| || ||| | || |||| || Sbjct 5429 TGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGC 5370 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | || | ||||| ||||| |||||||||||| ||||| || ||| Sbjct 5369 TTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTT 5310 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| ||| ||| || || | ||| || || ||||| || Sbjct 5309 GC-CTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGT 5251 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTG 15368 ||| ||||| || ||||| ||||| |||| Sbjct 5250 CAGGGTTTTGACGAAAATCTGCATCTTTG 5222 >seq87 Length=177581 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||||||||| ||||| || ||||| ||||| || | || | ||||| Sbjct 54912 AACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 54971 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| || | ||||| | || ||||| ||| ||||| || || || Sbjct 54972 GAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTG 55031 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| || ||| || || | || || || || | || || || || |||||||| | Sbjct 55032 AATCTTAGCT-TTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTCT 55090 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || ||||| || ||||| |||||| Sbjct 55091 TTCCCGTAAGGGTTTTGACGAAAATCTGCATA 55122 >seq36 Length=331580 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||| ||| | || ||||||||||| | || || || |||||||| ||||| Sbjct 254878 AATTTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCAACTTCCAAGGTAATCGTTTT 254819 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||| || |||||||| || || |||||||| ||| Sbjct 254818 ACCGGTGAGAGTTTTCACGAAGATTTGCATCTTT 254785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360468337215954