Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq9434 105 5e-18
seq184 91.5 1e-13
seq87 87.8 1e-12
seq36 84.2 2e-11
>seq9434
Length=50679
Score = 105 bits (116), Expect = 5e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| || || || ||||| ||||| |||| | | | || || | |||
Sbjct 44735 TGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCCTCCAGTTGC 44794
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||| || ||||| ||||| ||||| ||||| ||||||
Sbjct 44795 TTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATTTTA 44854
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || || ||||| |||| || || ||||| |||||||| || |||
Sbjct 44855 GCCTTAACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCAGTC 44914
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
| || || ||||| ||||||||
Sbjct 44915 AATGTCTTCACAAATATTTGCAT 44937
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| |||||||| || || || ||||| ||||| ||||| ||| | || | |||||
Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| || ||||| | ||||| | || ||||| ||| ||||| || || ||
Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||| || | || ||||| || | || || || | ||||| |||||
Sbjct 45533 ATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTC 45592
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || |||||||||||||||
Sbjct 45593 CCAGTAAGGGTCTTGACAAAAATTTGCATA 45622
>seq184
Length=120086
Score = 91.5 bits (100), Expect = 1e-13
Identities = 147/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| || || || || || || || ||||||||| || ||| | || |||| ||
Sbjct 5429 TGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGC 5370
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
|| || ||| | || | ||||| ||||| |||||||||||| ||||| || |||
Sbjct 5369 TTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTT 5310
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
|| ||| ||| | || ||||| ||| ||| || || | ||| || || ||||| ||
Sbjct 5309 GC-CTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGT 5251
Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTG 15368
||| ||||| || ||||| ||||| ||||
Sbjct 5250 CAGGGTTTTGACGAAAATCTGCATCTTTG 5222
>seq87
Length=177581
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| |||||||||||||| ||||| || ||||| ||||| || | || | |||||
Sbjct 54912 AACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 54971
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| ||| ||||| || | ||||| | || ||||| ||| ||||| || || ||
Sbjct 54972 GAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTG 55031
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| || ||| || || | || || || || | || || || || |||||||| |
Sbjct 55032 AATCTTAGCT-TTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTCT 55090
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || || || ||||| || ||||| ||||||
Sbjct 55091 TTCCCGTAAGGGTTTTGACGAAAATCTGCATA 55122
>seq36
Length=331580
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||||| ||| ||| | || ||||||||||| | || || || |||||||| |||||
Sbjct 254878 AATTTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCAACTTCCAAGGTAATCGTTTT 254819
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
||| || |||||||| || || |||||||| |||
Sbjct 254818 ACCGGTGAGAGTTTTCACGAAGATTTGCATCTTT 254785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360468337215954
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |