Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq48644 82.4 6e-11 seq45117 82.4 6e-11 >seq48644 Length=2856 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||||||||| ||||| || || | || ||||||| Sbjct 1851 CACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTC 1910 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || || | || || | |||||| ||| || | ||| || ||||| Sbjct 1911 TAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 1970 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| ||| || | | ||| || ||| || || || | ||| || || || Sbjct 1971 GATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTT 2030 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || |||| ||||| ||||| || ||||| || Sbjct 2031 CCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||||||||| ||||| || || | || ||||||| Sbjct 2444 CACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTC 2503 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || || | || || | |||||| ||| || | ||| || ||||| Sbjct 2504 TAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 2563 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| ||| || | | ||| || ||| || || || | ||| || || || Sbjct 2564 GATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTT 2623 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || |||| ||||| ||||| || ||||| || Sbjct 2624 CCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412614440230036