Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 82.4 6e-11
seq45117 82.4 6e-11
>seq48644
Length=2856
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||||||||| ||||| || || | || |||||||
Sbjct 1851 CACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTC 1910
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||||| || || | || || | |||||| ||| || | ||| || |||||
Sbjct 1911 TAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 1970
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| ||| || | | ||| || ||| || || || | ||| || || ||
Sbjct 1971 GATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTT 2030
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044
|| |||| ||||| ||||| || ||||| ||
Sbjct 2031 CCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063
>seq45117
Length=3449
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||| | ||||||||||||||||| ||||| || || | || |||||||
Sbjct 2444 CACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTC 2503
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||||| || || | || || | |||||| ||| || | ||| || |||||
Sbjct 2504 TAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 2563
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| ||| ||| || | | ||| || ||| || || || | ||| || || ||
Sbjct 2564 GATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTT 2623
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044
|| |||| ||||| ||||| || ||||| ||
Sbjct 2624 CCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412614440230036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |