Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9434 84.2 2e-11 >seq9434 Length=50679 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTG 43977 || || ||| ||| || ||||| |||||||| || | || || |||| |||| ||| Sbjct 44735 TGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGC-CATCCTCCAGTTG 44793 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC-TGAAATTT 44036 ||||| ||||| |||| || |||||||| |||| | ||||| || || |||| || Sbjct 44794 CTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAA--TT 44851 Query 44037 TTTGTTTGACCATAG-CAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCG 44095 || | | | ||| | | | ||||| | || || || | || || ||||| || Sbjct 44852 TTAGCCTTAACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCA 44911 Query 44096 GTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||||||||| Sbjct 44912 GTCAATGTCTTCACAAATATTTGCAT 44937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353101700907912