Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 102 7e-17
seq45117 102 7e-17
seq184 86.0 5e-12
seq35801 84.2 2e-11
seq22012 84.2 2e-11
>seq48644
Length=2856
Score = 102 bits (112), Expect = 7e-17
Identities = 142/196 (72%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||||||||||||||| || || | || ||||||| ||||| || ||| || |
Sbjct 1869 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 1928
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT---GAT 48651
|| | ||||||||| ||| || | | |||||||||| || ||| |||| ||
Sbjct 1929 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC-GCTTTCACAT 1987
Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711
| || ||||| |||| ||| || ||| | ||||| || || ||||| || |||||
Sbjct 1988 TGTCG--ATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2045
Query 48712 CACAAAAATCTGCATC 48727
|||||| |||||||||
Sbjct 2046 CACAAAGATCTGCATC 2061
>seq45117
Length=3449
Score = 102 bits (112), Expect = 7e-17
Identities = 142/196 (72%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||||||||||||||| || || | || ||||||| ||||| || ||| || |
Sbjct 2462 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 2521
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT---GAT 48651
|| | ||||||||| ||| || | | |||||||||| || ||| |||| ||
Sbjct 2522 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC-GCTTTCACAT 2580
Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711
| || ||||| |||| ||| || ||| | ||||| || || ||||| || |||||
Sbjct 2581 TGTCG--ATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2638
Query 48712 CACAAAAATCTGCATC 48727
|||||| |||||||||
Sbjct 2639 CACAAAGATCTGCATC 2654
>seq184
Length=120086
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| || || |||||||| || | ||| | ||||| |||||||||||| || |
Sbjct 5417 TCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAG 5358
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|||| || ||||| || || | | |||||||||| || || ||| | |
Sbjct 5357 ATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTG 5298
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
| ||||| |||| || || ||||| ||||| || ||||| || || ||||| ||
Sbjct 5297 TCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACG 5238
Query 48716 AAAATCTGCATC 48727
||||||||||||
Sbjct 5237 AAAATCTGCATC 5226
>seq35801
Length=5147
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| ||||||||||||||||||||| || | ||||| |||||||| || | |
Sbjct 320 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAG 261
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| || | |||||| || ||| | | ||||||||| ||| ||| ||||| |
Sbjct 260 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTA 201
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
||||||| || | || ||||| || ||||| || || || | ||| || ||
Sbjct 200 TCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACG 141
Query 48716 AAAATCTGCAT 48726
|| ||||||||
Sbjct 140 AATATCTGCAT 130
>seq22012
Length=9549
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595
||||| ||||||||||||||||||||| || | ||||| ||||||||||| | |
Sbjct 5877 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAG 5936
Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655
|| || | |||||| || ||| | | ||||||||| ||| ||| ||||| |
Sbjct 5937 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTA 5996
Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715
||||||| || | || ||||| || || || || || || | ||| || ||
Sbjct 5997 TCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACG 6056
Query 48716 AAAATCTGCAT 48726
|| ||||||||
Sbjct 6057 AATATCTGCAT 6067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419261292791594
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |