Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq48644 102 7e-17 seq45117 102 7e-17 seq184 86.0 5e-12 seq35801 84.2 2e-11 seq22012 84.2 2e-11 >seq48644 Length=2856 Score = 102 bits (112), Expect = 7e-17 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||||||| || || | || ||||||| ||||| || ||| || | Sbjct 1869 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 1928 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT---GAT 48651 || | ||||||||| ||| || | | |||||||||| || ||| |||| || Sbjct 1929 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC-GCTTTCACAT 1987 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| ||| || ||| | ||||| || || ||||| || ||||| Sbjct 1988 TGTCG--ATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2045 Query 48712 CACAAAAATCTGCATC 48727 |||||| ||||||||| Sbjct 2046 CACAAAGATCTGCATC 2061 >seq45117 Length=3449 Score = 102 bits (112), Expect = 7e-17 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||||||| || || | || ||||||| ||||| || ||| || | Sbjct 2462 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 2521 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTT---GAT 48651 || | ||||||||| ||| || | | |||||||||| || ||| |||| || Sbjct 2522 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC-GCTTTCACAT 2580 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| ||| || ||| | ||||| || || ||||| || ||||| Sbjct 2581 TGTCG--ATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2638 Query 48712 CACAAAAATCTGCATC 48727 |||||| ||||||||| Sbjct 2639 CACAAAGATCTGCATC 2654 >seq184 Length=120086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || || |||||||| || | ||| | ||||| |||||||||||| || | Sbjct 5417 TCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAG 5358 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 |||| || ||||| || || | | |||||||||| || || ||| | | Sbjct 5357 ATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTG 5298 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| |||| || || ||||| ||||| || ||||| || || ||||| || Sbjct 5297 TCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACG 5238 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 5237 AAAATCTGCATC 5226 >seq35801 Length=5147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||||||||||||| || | ||||| |||||||| || | | Sbjct 320 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAG 261 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || | |||||| || ||| | | ||||||||| ||| ||| ||||| | Sbjct 260 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTA 201 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 ||||||| || | || ||||| || ||||| || || || | ||| || || Sbjct 200 TCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACG 141 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 140 AATATCTGCAT 130 >seq22012 Length=9549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||||||||||||| || | ||||| ||||||||||| | | Sbjct 5877 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAG 5936 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || | |||||| || ||| | | ||||||||| ||| ||| ||||| | Sbjct 5937 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTA 5996 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 ||||||| || | || ||||| || || || || || || | ||| || || Sbjct 5997 TCTATGGTGTCCGAGCTTTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACG 6056 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 6057 AATATCTGCAT 6067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419261292791594