Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq87 127 2e-24 seq9434 120 3e-22 seq10588 102 7e-17 seq4209 100 3e-16 >seq87 Length=177581 Score = 127 bits (140), Expect = 2e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || |||||| ||||||| | |||||||||||||||||||| || || || Sbjct 55651 TCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGAATCCCCTCCTTA 55710 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||||| || | ||| ||||||| | ||||| |||| |||||| Sbjct 55711 TCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCGACCTCAAGAGTGATG 55770 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| |||||||| ||||||||||| Sbjct 55771 GTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| |||| || ||||| || || | ||||||||| | || | ||| || Sbjct 55140 CACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 55199 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || ||||||| ||||| ||||| ||||||||||| || || || || | Sbjct 55200 GAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTG 55259 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || || |||||| | | | ||||||| | || || |||| || || || || Sbjct 55260 AATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCTT 55319 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| ||||||||||||||||| Sbjct 55320 GCCAGTCAAAGTCTTCACAAAGATCTGCAT 55349 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| ||| || ||||| || | |||||| || | ||| ||| || || || Sbjct 54462 GTGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTG 54521 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || ||||||| | ||||||||| ||||| || ||||| || || || | ||||| Sbjct 54522 CTTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTT 54581 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||||| | | | ||||| | | || || |||| || || || || ||||| Sbjct 54582 TGCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTCTTACCAGT 54641 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||||||||| ||||| Sbjct 54642 GAGGGTTTTCACAAAGATTTGCAT 54665 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||| || |||||||| | ||||||||| || || | ||| || Sbjct 54685 ACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCCAATGTCCTTCCATCTTCA 54744 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || |||| || || || ||||||||||| ||||| || ||||| || | | Sbjct 54745 AGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGA 54804 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | | ||||| | | || || || | || ||||| ||| Sbjct 54805 ATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCACTTCCAATGTAATGGTCTTT 54864 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| || |||||||| Sbjct 54865 CCGGTCAGGGTCTTCACGAAAATCTGCAT 54893 >seq9434 Length=50679 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869 || || ||||| || | ||||||||| ||| | |||| | ||||||||| || ||||| Sbjct 44741 GTGGACTCCTTCTGAATGTTATAATCAGCT-AGAGTGCGGCCATCCTCCAGTTGCTTTCC 44799 Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929 ||||||| | | ||||| || |||||||| ||||| ||||| | |||||| ||||| Sbjct 44800 AGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATTTTAGCCTT 44859 Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || | ||| || |||| | || || || | ||||||||||||||||| | || Sbjct 44860 AACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGT 44919 Query 94990 TTTCACAAAGATCTGCAT 95007 |||||||| || ||||| Sbjct 44920 CTTCACAAATATTTGCAT 44937 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || || ||| ||||||| | ||||||||| || || || ||||||||||| Sbjct 45010 ATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTT 45069 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||||||||||| | | | |||||| | ||||| |||| || || Sbjct 45070 ATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTAT 45129 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| || ||||| ||||| |||||||| Sbjct 45130 GGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || |||||||| || | ||||||||| | || | ||| || Sbjct 45640 CACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTTCCATCTTC 45699 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || ||| ||||||| || || ||||||||||| ||||| || || ||||| | Sbjct 45700 AAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 45759 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || || ||||| | | | ||||| | | ||||| |||| ||||| || || Sbjct 45760 AATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTGATAGTCTT 45819 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || |||||||| Sbjct 45820 GCCAGTTAGGGTCTTTACGAATATCTGCAT 45849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||||||| | || || || || || | || ||||| Sbjct 45851 CCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCA 45910 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| || || |||||| ||||||| | |||||| || || || ||| Sbjct 45911 AGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGA 45970 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || || || ||| | | | ||||||| | || || Sbjct 45971 ATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACC 46030 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || || || || |||||||| ||||||||||| Sbjct 46031 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | || || |||||||| | ||||||||| | ||| | ||| || Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || || ||||||| || || ||||| ||||| || || || || || || | Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||||||||| ||| | | | ||||| | | || || || | || || ||||| Sbjct 45533 ATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTC 45592 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || || ||||| || ||||| Sbjct 45593 CCAGTAAGGGTCTTGACAAAAATTTGCAT 45621 >seq10588 Length=20159 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| ||||| ||||||| | || ||||| || || |||||||| || || Sbjct 1324 ATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTT 1383 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | ||| ||||| | | || || || | ||||| Sbjct 1384 GTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGAT 1443 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| || || || |||||||||||||| Sbjct 1444 AGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| ||||| || | || ||||| | ||| | |||||| ||||| ||||| Sbjct 1055 GTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCA 1114 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | || || ||||||||||| ||||| ||||| | || || ||||| Sbjct 1115 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTC 1174 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||| |||| | || || || | |||||||| || ||||| | || Sbjct 1175 ACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTC 1234 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 1235 TTAACAAAGATCTGCAT 1251 >seq4209 Length=73032 Score = 100 bits (110), Expect = 3e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| ||| | |||||| ||||| || | |||||| || || || ||| | ||||| Sbjct 25 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAG-CA-AGGGTTCTACCATCCT 82 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || || ||||||| | | ||||| ||||| || || ||||| ||||| | Sbjct 83 CGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTT 142 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || |||||||| | | | ||||| | | || || || | || ||||| | Sbjct 143 GGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATGGTCT 202 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || | |||||||||||||||||||| Sbjct 203 TTCCGGTCAATGTTTTCACAAAGATCTGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446119262757840