Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq87 127 2e-24
seq9434 120 3e-22
seq10588 102 7e-17
seq4209 100 3e-16
>seq87
Length=177581
Score = 127 bits (140), Expect = 2e-24
Identities = 121/155 (78%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| || || || |||||| ||||||| | |||||||||||||||||||| || || ||
Sbjct 55651 TCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGGAGGAATCCCCTCCTTA 55710
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | |||||| ||||| || | ||| ||||||| | ||||| |||| ||||||
Sbjct 55711 TCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTCGACCTCAAGAGTGATG 55770
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || ||||| |||||||| |||||||||||
Sbjct 55771 GTCTTACCTGTAAGTGTTTTCACGAAGATCTGCAT 55805
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
|||||| |||| || ||||| || || | ||||||||| | || | ||| ||
Sbjct 55140 CACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 55199
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| || || || ||||||| ||||| ||||| ||||||||||| || || || || |
Sbjct 55200 GAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTG 55259
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || || |||||| | | | ||||||| | || || |||| || || || ||
Sbjct 55260 AATCTTAGCTTTGACGTTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCTT 55319
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| | ||| |||||||||||||||||
Sbjct 55320 GCCAGTCAAAGTCTTCACAAAGATCTGCAT 55349
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||||| ||| || ||||| || | |||||| || | ||| ||| || || ||
Sbjct 54462 GTGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTG 54521
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
|| || ||||||| | ||||||||| ||||| || ||||| || || || | |||||
Sbjct 54522 CTTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTT 54581
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||||||| | | | ||||| | | || || |||| || || || || |||||
Sbjct 54582 TGCCTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCAAGAGTTATTGTCTTACCAGT 54641
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
|| |||||||||||||| |||||
Sbjct 54642 GAGGGTTTTCACAAAGATTTGCAT 54665
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | ||| || |||||||| | ||||||||| || || | ||| ||
Sbjct 54685 ACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCCAATGTCCTTCCATCTTCA 54744
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || || |||| || || || ||||||||||| ||||| || ||||| || | |
Sbjct 54745 AGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGA 54804
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| || | | | ||||| | | || || || | || ||||| |||
Sbjct 54805 ATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCACTTCCAATGTAATGGTCTTT 54864
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| || ||||||||
Sbjct 54865 CCGGTCAGGGTCTTCACGAAAATCTGCAT 54893
>seq9434
Length=50679
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCC 94869
|| || ||||| || | ||||||||| ||| | |||| | ||||||||| || |||||
Sbjct 44741 GTGGACTCCTTCTGAATGTTATAATCAGCT-AGAGTGCGGCCATCCTCCAGTTGCTTTCC 44799
Query 94870 GCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTT 94929
||||||| | | ||||| || |||||||| ||||| ||||| | |||||| |||||
Sbjct 44800 AGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATTTTAGCCTT 44859
Query 94930 GACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989
|| | ||| || |||| | || || || | ||||||||||||||||| | ||
Sbjct 44860 AACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGT 44919
Query 94990 TTTCACAAAGATCTGCAT 95007
|||||||| || |||||
Sbjct 44920 CTTCACAAATATTTGCAT 44937
Score = 114 bits (126), Expect = 1e-20
Identities = 119/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || || || || ||| ||||||| | ||||||||| || || || |||||||||||
Sbjct 45010 ATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTT 45069
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | |||||||||||||| | | | |||||| | ||||| |||| || ||
Sbjct 45070 ATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTAT 45129
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| ||||| || ||||| ||||| ||||||||
Sbjct 45130 GGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | || |||||||| || | ||||||||| | || | ||| ||
Sbjct 45640 CACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCAAGGGTCCTTCCATCTTC 45699
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| || || ||| ||||||| || || ||||||||||| ||||| || || ||||| |
Sbjct 45700 AAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 45759
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || || ||||| | | | ||||| | | ||||| |||| ||||| || ||
Sbjct 45760 AATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTCTCGACTTCAAGTGTGATAGTCTT 45819
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || || || || ||||||||
Sbjct 45820 GCCAGTTAGGGTCTTTACGAATATCTGCAT 45849
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | ||||||||| | || || || || || | || |||||
Sbjct 45851 CCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGCA 45910
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || | |||||| || || |||||| ||||||| | |||||| || || || |||
Sbjct 45911 AGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGGA 45970
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | || || || || ||| | | | ||||||| | || ||
Sbjct 45971 ATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCAACC 46030
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | ||||| || || || || || |||||||| |||||||||||
Sbjct 46031 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | || || |||||||| | ||||||||| | ||| | ||| ||
Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || || || ||||||| || || ||||| ||||| || || || || || || |
Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
||||||||||| ||| | | | ||||| | | || || || | || || |||||
Sbjct 45533 ATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTC 45592
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||| || || ||||| || |||||
Sbjct 45593 CCAGTAAGGGTCTTGACAAAAATTTGCAT 45621
>seq10588
Length=20159
Score = 102 bits (112), Expect = 7e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| ||||| ||||| ||||||| | || ||||| || || |||||||| || ||
Sbjct 1324 ATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTT 1383
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || ||||| ||| | ||| ||||| | | || || || | |||||
Sbjct 1384 GTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGAT 1443
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| |||||||| || || || ||||||||||||||
Sbjct 1444 AGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870
||||| ||||| || | || ||||| | ||| | |||||| ||||| |||||
Sbjct 1055 GTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCA 1114
Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930
||||||| || | || || ||||||||||| ||||| ||||| | || || |||||
Sbjct 1115 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTC 1174
Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990
|| | | ||| |||| | || || || | |||||||| || ||||| | ||
Sbjct 1175 ACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTC 1234
Query 94991 TTCACAAAGATCTGCAT 95007
|| ||||||||||||||
Sbjct 1235 TTAACAAAGATCTGCAT 1251
>seq4209
Length=73032
Score = 100 bits (110), Expect = 3e-16
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
|||| ||| | |||||| ||||| || | |||||| || || || ||| | |||||
Sbjct 25 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAG-CA-AGGGTTCTACCATCCT 82
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
| ||||| || || ||||||| | | ||||| ||||| || || ||||| ||||| |
Sbjct 83 CGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTT 142
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|| || |||||||| | | | ||||| | | || || || | || ||||| |
Sbjct 143 GGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAACCTCTAGGGTTATGGTCT 202
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || | ||||||||||||||||||||
Sbjct 203 TTCCGGTCAATGTTTTCACAAAGATCTGCAT 233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446119262757840
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