Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6752 150 3e-32 seq238 150 3e-32 seq13831 140 5e-29 seq76 140 5e-29 seq5287 134 2e-27 seq39506 131 3e-26 seq16615 125 1e-24 seq4292 123 4e-24 seq20366 109 9e-20 seq955 104 4e-18 seq98 93.3 7e-15 seq17772 82.4 1e-11 >seq6752 Length=27800 Score = 150 bits (166), Expect = 3e-32 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || |||||||| |||||| | || || | Sbjct 8358 GAGACAACATCCAGGGAATCACCAAGCCTGCGATTCGTCGTCTTGCTCGTAGAGGCGGTG 8417 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| | ||||||| |||| | | |||| | || ||||| || Sbjct 8418 TTAAGCGTATCAGTGGTCTCATCTATGAGGAGACAAGGGGTGTTCTCAAAATCTTTCTAG 8477 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| ||| | ||| ||||||||||| | | |||||||||||| Sbjct 8478 AGAATGTGATTCGTGACGCTGTTACCTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 8537 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||||||||| | || | || || | | |||| ||||||||| ||| Sbjct 8538 CCATGGATGTCGTCTATGCTCTCAAGAGACAGGGTAGAACTCTTTACGGTTTTGGAGGTT 8597 Query 16698 A 16698 | Sbjct 8598 A 8598 >seq238 Length=176597 Score = 150 bits (166), Expect = 3e-32 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || |||||||| |||||| | ||||| | Sbjct 127060 GAGACAACATCCAGGGAATCACCAAGCCTGCAATTCGTCGTCTTGCTCGTAGAGGTGGTG 127119 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| | ||||||| |||| | | |||| | |||||||| || Sbjct 127120 TTAAGCGTATCAGTGGTCTAATCTATGAGGAGACCAGGGGTGTTCTCAAGATCTTTCTAG 127179 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| ||| | ||| || |||||||| | | | |||||||| ||| Sbjct 127180 AGAACGTGATTCGTGACGCTGTTACCTACACTGAGCACGCCAGAAGGAAGACTGTTACCG 127239 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| | || | || ||| | | |||| || ||||| ||| Sbjct 127240 CCATGGATGTTGTCTATGCTCTTAAGAGACAGGGCAGGACTCTTTACGGATTTGGGGGTT 127299 Query 16698 A 16698 | Sbjct 127300 A 127300 >seq13831 Length=32386 Score = 140 bits (154), Expect = 5e-29 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | ||| | ||||||||||| |||||||||||||| || || Sbjct 19847 GCCAAGAGACATCGCAAAGTTCTCAGGGATAACATCCAGGGAATCACCAAGCCGGCGATT 19788 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||| | ||||| |||||||| || || | |||||||||||| Sbjct 19787 CGCCGTCTTGCTCGTAGAGGTGGTGTCAAGCGAATCAGCGGTCTTATCTATGAAGAGACC 19728 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | |||||||| | ||| || || | |||| || | ||| ||||| Sbjct 19727 AGAGGTGTTCTCAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACCGAA 19668 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||| | ||||||||||| |||||||| | || ||||| ||||| Sbjct 19667 CATGCTAGGAGGAAGACTGTCACAGCCATGGATGTTGTTTATGCTTTGAA 19618 Score = 129 bits (142), Expect = 9e-26 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| |||| |||||||| |||||||||||||| ||||| Sbjct 27916 GCCAAGAGGCATCGTAAAGTTCTAAGAGACAACATCCAGGGAATCACCAAGCCTGCTATT 27857 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| ||||| | || |||||||||||| || || | |||| || |||| Sbjct 27856 CGCCGTCTAGCTCGGAGAGGAGGAGTCAAGCGTATCAGCGGTCTCATCTACGAGGAGACA 27797 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | |||||||| | ||| || || | |||| || | ||| |||||| Sbjct 27796 AGAGGAGTTCTCAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACCGAG 27737 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| | ||||| || ||| |||||||| | |||||||| Sbjct 27736 CACGCTAGGAGGAAGACAGTAACCGCCATGGATGTTGTCTATGC 27693 >seq76 Length=145850 Score = 140 bits (154), Expect = 5e-29 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| |||||||||||||| || || |||||||| |||||| | ||||| || Sbjct 38248 GACAACATCCAGGGAATCACCAAGCCTGCAATTCGTCGTCTTGCTCGTAGAGGTGGTGTT 38307 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| || |||| | | |||| | |||||||| || || Sbjct 38308 AAGCGTATCAGTGGTCTCATCTACGAGGAGACCAGAGGTGTTCTCAAGATCTTTCTAGAG 38367 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | ||| || ||||| || | | |||||||||||| || Sbjct 38368 AACGTGATTCGTGATGCTGTTACCTACACTGAGCATGCCAGGAGGAAGACTGTCACCGCC 38427 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | |||||||| Sbjct 38428 ATGGATGTTGTCTATGC 38444 >seq5287 Length=34255 Score = 134 bits (148), Expect = 2e-27 Identities = 178/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| |||||||| |||||||||||||| || ||||||||||| || | | || Sbjct 33886 TCTTAGAGACAACATCCAGGGAATCACCAAGCCTGCGATCCGTCGTCTCGCAAGAAGAGG 33945 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| | || || ||||||| |||| | | |||| | |||||||| Sbjct 33946 AGGTGTCAAGCGTATTAGCGGTCTGATCTATGAGGAGACCAGAGGTGTTCTCAAGATCTT 34005 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| ||| || | ||||||| | ||| || |||||||||| | ||||| || Sbjct 34006 TTTGGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGGAAGACAGT 34065 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| |||| ||||| | || | ||||| | | | || ||||| || Sbjct 34066 TACCGCCATGGATGTCGTTTATGCTCTCAAGAGGCAAGGAAGAACTCTCTACGGTTTCGG 34125 Query 16693 AAGTTAA 16699 ||||| Sbjct 34126 CGGTTAA 34132 >seq39506 Length=4102 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| | | |||| |||| |||||||| |||||||||||||| || || Sbjct 3257 GCTAAGCGTCACAGAAAGGTTCTTAGAGACAACATCCAGGGAATCACCAAGCCTGCCATT 3198 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || | | || || || |||||| | || || ||||||| |||| Sbjct 3197 CGTCGTCTCGCAAGAAGAGGAGGTGTTAAGCGTATTAGCGGTCTGATCTATGAGGAGACC 3138 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | |||| | |||||||| | ||| ||| || | ||||||| | ||| || ||| Sbjct 3137 AGAGGTGTTCTCAAGATCTTTTTGGAGAACGTGATTCGTGATGCTGTTACCTACACTGAG 3078 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | ||||| || ||| |||||||| |||| ||||| | || | ||||| Sbjct 3077 CACGCTAGGAGGAAGACGGTTACCGCCATGGATGTCGTTTATGCTCTCAAGAGGCAAGGA 3018 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 3017 AGAACTCTCTACGGTTTCGGCGGTTAA 2991 >seq16615 Length=27032 Score = 125 bits (138), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | ||| | ||||||||||| |||||||||||||| || || Sbjct 5286 GCCAAGAGACATCGCAAAGTTCTCAGGGATAACATCCAGGGAATCACCAAGCCGGCGATT 5345 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||| | ||||| |||||||| || || | |||| ||||||| Sbjct 5346 CGCCGTCTTGCTCGTAGAGGTGGTGTCAAGCGAATCAGCGGTCTTATCTACGAAGAGACC 5405 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 | | |||| | |||||||| | ||| || || | |||| || || || || || || Sbjct 5406 AGAGGTGTTCTCAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACA-TACACAGA 5464 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||| | ||||||||||| |||||||| | || || || ||||| Sbjct 5465 ACATGCTAGGAGGAAGACTGTCACAGCCATGGATGTTGTTTACGCTTTGAA 5515 >seq4292 Length=60297 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || |||||||||||||| || || | | || ||||| | || |||| Sbjct 37059 GAGACAACATTCAGGGAATCACCAAGCCTGCCATTAGAAGGCTTGCTCGCAGAGGAGGAG 37000 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || || |||| || |||| ||||| ||| | |||||||| ||| Sbjct 36999 TGAAGCGAATCAGCGGCTTAATCTACGAGGAGACTCGTGGAGTTCTTAAGATCTTTCTCG 36940 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| || || || | |||||| ||||||||| || |||||||| || Sbjct 36939 AAAACGTGATTAGAGACTCTGTTACCTATACAGAGCACGCTCGTCGCAAGACTGTTACTG 36880 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| |||| ||||| | || ||||| ||||||| | |||||||| || ||| Sbjct 36879 CTATGGATGTCGTTTATGCTCTCAAGCGTCAGGGCCGTACTCTATATGGTTTCGGTGGTT 36820 Query 16698 A 16698 | Sbjct 36819 A 36819 >seq20366 Length=10555 Score = 109 bits (120), Expect = 9e-20 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||| ||||| || || | | || ||||| | || || | Sbjct 10478 GAGACAACATCCAGGGAATCACTAAGCCTGCCATTAGAAGACTTGCTCGAAGAGGAGGTG 10419 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||||| || || | | |||||||| | | | ||| | |||||||||||| Sbjct 10418 TTAAGCGAATCAGCGGTCTTATTTATGAAGAAACCAGAGGAGTTCTCAAGATCTTCCTCG 10359 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| || | ||||||| | || |||||||||||| || |||||||||||| Sbjct 10358 AAAACGTCATTCGTGATGCTGTAACTTACACCGAGCACGCTCGTCGCAAGACTGTCACCG 10299 Query 16638 CCATGGATATCGTCTATGCATTGAA 16662 |||||||| | || ||||| |||| Sbjct 10298 CCATGGATGTTGTTTATGCTCTGAA 10274 >seq955 Length=89413 Score = 104 bits (114), Expect = 4e-18 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||| || || || | ||||| | | || || | Sbjct 18488 GAGACAACATCCAGGGGATCACGAAGCCCGCCATTCGCAGGCTGGCGAGAAGAGGAGGCG 18547 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 ||||| | || ||| | | ||||| || | | | ||| | ||||||||||| Sbjct 18548 TCAAGAGGATCAGTGGTCTTATTTATGAGGAAACCAGAGGAGTTCTTAAGATCTTCCTAG 18607 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||| || | |||||| |||||||||| | |||||||| ||| Sbjct 18608 AGAACGTCATTCGCGATTCTGTGACCTATACTGAGCACGCTAGGAGGAAGACTGTTACCG 18667 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||| ||||| | || | || ||| | | | || ||||| ||| ||| Sbjct 18668 CCATGGACGTCGTTTATGCTCTCAAGAGACAGGGCAGGACTCTGTACGGTTTCGGAGGTT 18727 Query 16698 AATCT 16702 ||||| Sbjct 18728 AATCT 18732 >seq98 Length=168712 Score = 93.3 bits (102), Expect = 7e-15 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || || || |||||||| || | | |||| | | ||||| ||| Sbjct 42397 GATAACATTCAGGGGATAACGAAGCCAGCCATTAGAAGATTGGCGAGGAGAGGTGGTGTC 42338 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || ||| | |||| || |||| | | |||| | ||||||||||| || Sbjct 42337 AAGAGAATCAGCGGACTCATCTACGAGGAGACGAGAGGTGTTCTCAAGATCTTCCTTGAG 42278 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||| || | ||||| |||||||||| || ||||| || || || Sbjct 42277 AACGTCATTCGTGACTCTGTTACTTATACAGAGCACGCTAGGCGGAAGACGGTGACTGCC 42218 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| | || | || ||| | | ||||||| ||||| ||| | Sbjct 42217 ATGGATGTGGTTTATGCTCTCAAGAGACAGGGCAGGACTCTTTATGGATTTGGCGGTTGA 42158 Query 16700 T 16700 | Sbjct 42157 T 42157 >seq17772 Length=12362 Score = 82.4 bits (90), Expect = 1e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || || |||||||| ||||| | || |||| Sbjct 8220 GAGACAACATCCAGGGAATCACCAAGCCTGCCATTCGTCGTCTAGCTCGGAGAGGCGGAG 8161 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||||| || || | |||| || |||| | | ||| | |||||||| Sbjct 8160 TCAAGCGTATCAGCGGTCTCATCTACGAGGAGACCAGAGGAGTTCTCAAGATCTT 8106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78720820092642