Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq6752 150 3e-32
seq238 150 3e-32
seq13831 140 5e-29
seq76 140 5e-29
seq5287 134 2e-27
seq39506 131 3e-26
seq16615 125 1e-24
seq4292 123 4e-24
seq20366 109 9e-20
seq955 104 4e-18
seq98 93.3 7e-15
seq17772 82.4 1e-11
>seq6752
Length=27800
Score = 150 bits (166), Expect = 3e-32
Identities = 178/241 (74%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| |||||||||||||| || || |||||||| |||||| | || || |
Sbjct 8358 GAGACAACATCCAGGGAATCACCAAGCCTGCGATTCGTCGTCTTGCTCGTAGAGGCGGTG 8417
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || ||| | ||||||| |||| | | |||| | || ||||| ||
Sbjct 8418 TTAAGCGTATCAGTGGTCTCATCTATGAGGAGACAAGGGGTGTTCTCAAAATCTTTCTAG 8477
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | ||| ||| | ||| ||||||||||| | | ||||||||||||
Sbjct 8478 AGAATGTGATTCGTGACGCTGTTACCTACACCGAGCACGCCAGGAGGAAGACTGTCACCG 8537
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| |||||||||| | || | || || | | |||| ||||||||| |||
Sbjct 8538 CCATGGATGTCGTCTATGCTCTCAAGAGACAGGGTAGAACTCTTTACGGTTTTGGAGGTT 8597
Query 16698 A 16698
|
Sbjct 8598 A 8598
>seq238
Length=176597
Score = 150 bits (166), Expect = 3e-32
Identities = 178/241 (74%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| |||||||||||||| || || |||||||| |||||| | ||||| |
Sbjct 127060 GAGACAACATCCAGGGAATCACCAAGCCTGCAATTCGTCGTCTTGCTCGTAGAGGTGGTG 127119
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || ||| | ||||||| |||| | | |||| | |||||||| ||
Sbjct 127120 TTAAGCGTATCAGTGGTCTAATCTATGAGGAGACCAGGGGTGTTCTCAAGATCTTTCTAG 127179
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||| ||| | ||| || |||||||| | | | |||||||| |||
Sbjct 127180 AGAACGTGATTCGTGACGCTGTTACCTACACTGAGCACGCCAGAAGGAAGACTGTTACCG 127239
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| | |||||||| | || | || ||| | | |||| || ||||| |||
Sbjct 127240 CCATGGATGTTGTCTATGCTCTTAAGAGACAGGGCAGGACTCTTTACGGATTTGGGGGTT 127299
Query 16698 A 16698
|
Sbjct 127300 A 127300
>seq13831
Length=32386
Score = 140 bits (154), Expect = 5e-29
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||||| | ||| | ||||||||||| |||||||||||||| || ||
Sbjct 19847 GCCAAGAGACATCGCAAAGTTCTCAGGGATAACATCCAGGGAATCACCAAGCCGGCGATT 19788
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| |||||| | ||||| |||||||| || || | ||||||||||||
Sbjct 19787 CGCCGTCTTGCTCGTAGAGGTGGTGTCAAGCGAATCAGCGGTCTTATCTATGAAGAGACC 19728
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | |||| | |||||||| | ||| || || | |||| || | ||| |||||
Sbjct 19727 AGAGGTGTTCTCAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACCGAA 19668
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662
|| |||| | ||||||||||| |||||||| | || ||||| |||||
Sbjct 19667 CATGCTAGGAGGAAGACTGTCACAGCCATGGATGTTGTTTATGCTTTGAA 19618
Score = 129 bits (142), Expect = 9e-26
Identities = 163/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||| | | ||| |||| |||||||| |||||||||||||| |||||
Sbjct 27916 GCCAAGAGGCATCGTAAAGTTCTAAGAGACAACATCCAGGGAATCACCAAGCCTGCTATT 27857
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| ||||| | || |||||||||||| || || | |||| || ||||
Sbjct 27856 CGCCGTCTAGCTCGGAGAGGAGGAGTCAAGCGTATCAGCGGTCTCATCTACGAGGAGACA 27797
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | ||| | |||||||| | ||| || || | |||| || | ||| ||||||
Sbjct 27796 AGAGGAGTTCTCAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACCGAG 27737
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
||||||| | ||||| || ||| |||||||| | ||||||||
Sbjct 27736 CACGCTAGGAGGAAGACAGTAACCGCCATGGATGTTGTCTATGC 27693
>seq76
Length=145850
Score = 140 bits (154), Expect = 5e-29
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| |||||||||||||| || || |||||||| |||||| | ||||| ||
Sbjct 38248 GACAACATCCAGGGAATCACCAAGCCTGCAATTCGTCGTCTTGCTCGTAGAGGTGGTGTT 38307
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| | |||| || |||| | | |||| | |||||||| || ||
Sbjct 38308 AAGCGTATCAGTGGTCTCATCTACGAGGAGACCAGAGGTGTTCTCAAGATCTTTCTAGAG 38367
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | ||||||| | ||| || ||||| || | | |||||||||||| ||
Sbjct 38368 AACGTGATTCGTGATGCTGTTACCTACACTGAGCATGCCAGGAGGAAGACTGTCACCGCC 38427
Query 16640 ATGGATATCGTCTATGC 16656
|||||| | ||||||||
Sbjct 38428 ATGGATGTTGTCTATGC 38444
>seq5287
Length=34255
Score = 134 bits (148), Expect = 2e-27
Identities = 178/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||| |||| |||||||| |||||||||||||| || ||||||||||| || | | ||
Sbjct 33886 TCTTAGAGACAACATCCAGGGAATCACCAAGCCTGCGATCCGTCGTCTCGCAAGAAGAGG 33945
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| ||||||||| | || || ||||||| |||| | | |||| | ||||||||
Sbjct 33946 AGGTGTCAAGCGTATTAGCGGTCTGATCTATGAGGAGACCAGAGGTGTTCTCAAGATCTT 34005
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| ||| ||| || | ||||||| | ||| || |||||||||| | ||||| ||
Sbjct 34006 TTTGGAGAACGTGATTCGTGATGCTGTTACCTACACTGAGCACGCTAGGAGGAAGACAGT 34065
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| |||||||| |||| ||||| | || | ||||| | | | || ||||| ||
Sbjct 34066 TACCGCCATGGATGTCGTTTATGCTCTCAAGAGGCAAGGAAGAACTCTCTACGGTTTCGG 34125
Query 16693 AAGTTAA 16699
|||||
Sbjct 34126 CGGTTAA 34132
>seq39506
Length=4102
Score = 131 bits (144), Expect = 3e-26
Identities = 189/267 (71%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| | | |||| |||| |||||||| |||||||||||||| || ||
Sbjct 3257 GCTAAGCGTCACAGAAAGGTTCTTAGAGACAACATCCAGGGAATCACCAAGCCTGCCATT 3198
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| || | | || || || |||||| | || || ||||||| ||||
Sbjct 3197 CGTCGTCTCGCAAGAAGAGGAGGTGTTAAGCGTATTAGCGGTCTGATCTATGAGGAGACC 3138
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | |||| | |||||||| | ||| ||| || | ||||||| | ||| || |||
Sbjct 3137 AGAGGTGTTCTCAAGATCTTTTTGGAGAACGTGATTCGTGATGCTGTTACCTACACTGAG 3078
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||||| | ||||| || ||| |||||||| |||| ||||| | || | |||||
Sbjct 3077 CACGCTAGGAGGAAGACGGTTACCGCCATGGATGTCGTTTATGCTCTCAAGAGGCAAGGA 3018
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || ||||| || |||||
Sbjct 3017 AGAACTCTCTACGGTTTCGGCGGTTAA 2991
>seq16615
Length=27032
Score = 125 bits (138), Expect = 1e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||||| | ||| | ||||||||||| |||||||||||||| || ||
Sbjct 5286 GCCAAGAGACATCGCAAAGTTCTCAGGGATAACATCCAGGGAATCACCAAGCCGGCGATT 5345
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| |||||| | ||||| |||||||| || || | |||| |||||||
Sbjct 5346 CGCCGTCTTGCTCGTAGAGGTGGTGTCAAGCGAATCAGCGGTCTTATCTACGAAGAGACC 5405
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611
| | |||| | |||||||| | ||| || || | |||| || || || || || ||
Sbjct 5406 AGAGGTGTTCTCAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACA-TACACAGA 5464
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662
|| |||| | ||||||||||| |||||||| | || || || |||||
Sbjct 5465 ACATGCTAGGAGGAAGACTGTCACAGCCATGGATGTTGTTTACGCTTTGAA 5515
>seq4292
Length=60297
Score = 123 bits (136), Expect = 4e-24
Identities = 172/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||| || |||||||||||||| || || | | || ||||| | || ||||
Sbjct 37059 GAGACAACATTCAGGGAATCACCAAGCCTGCCATTAGAAGGCTTGCTCGCAGAGGAGGAG 37000
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| ||||| || || || |||| || |||| ||||| ||| | |||||||| |||
Sbjct 36999 TGAAGCGAATCAGCGGCTTAATCTACGAGGAGACTCGTGGAGTTCTTAAGATCTTTCTCG 36940
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
| | ||| || || || | |||||| ||||||||| || |||||||| ||
Sbjct 36939 AAAACGTGATTAGAGACTCTGTTACCTATACAGAGCACGCTCGTCGCAAGACTGTTACTG 36880
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
| |||||| |||| ||||| | || ||||| ||||||| | |||||||| || |||
Sbjct 36879 CTATGGATGTCGTTTATGCTCTCAAGCGTCAGGGCCGTACTCTATATGGTTTCGGTGGTT 36820
Query 16698 A 16698
|
Sbjct 36819 A 36819
>seq20366
Length=10555
Score = 109 bits (120), Expect = 9e-20
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| |||||||| ||||| || || | | || ||||| | || || |
Sbjct 10478 GAGACAACATCCAGGGAATCACTAAGCCTGCCATTAGAAGACTTGCTCGAAGAGGAGGTG 10419
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| ||||| || || | | |||||||| | | | ||| | ||||||||||||
Sbjct 10418 TTAAGCGAATCAGCGGTCTTATTTATGAAGAAACCAGAGGAGTTCTCAAGATCTTCCTCG 10359
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
| | ||| || | ||||||| | || |||||||||||| || ||||||||||||
Sbjct 10358 AAAACGTCATTCGTGATGCTGTAACTTACACCGAGCACGCTCGTCGCAAGACTGTCACCG 10299
Query 16638 CCATGGATATCGTCTATGCATTGAA 16662
|||||||| | || ||||| ||||
Sbjct 10298 CCATGGATGTTGTTTATGCTCTGAA 10274
>seq955
Length=89413
Score = 104 bits (114), Expect = 4e-18
Identities = 170/245 (69%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| || ||||| ||||| || || || | ||||| | | || || |
Sbjct 18488 GAGACAACATCCAGGGGATCACGAAGCCCGCCATTCGCAGGCTGGCGAGAAGAGGAGGCG 18547
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
||||| | || ||| | | ||||| || | | | ||| | |||||||||||
Sbjct 18548 TCAAGAGGATCAGTGGTCTTATTTATGAGGAAACCAGAGGAGTTCTTAAGATCTTCCTAG 18607
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| || | ||| || | |||||| |||||||||| | |||||||| |||
Sbjct 18608 AGAACGTCATTCGCGATTCTGTGACCTATACTGAGCACGCTAGGAGGAAGACTGTTACCG 18667
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
||||||| |||| ||||| | || | || ||| | | | || ||||| ||| |||
Sbjct 18668 CCATGGACGTCGTTTATGCTCTCAAGAGACAGGGCAGGACTCTGTACGGTTTCGGAGGTT 18727
Query 16698 AATCT 16702
|||||
Sbjct 18728 AATCT 18732
>seq98
Length=168712
Score = 93.3 bits (102), Expect = 7e-15
Identities = 165/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||| || || || || |||||||| || | | |||| | | ||||| |||
Sbjct 42397 GATAACATTCAGGGGATAACGAAGCCAGCCATTAGAAGATTGGCGAGGAGAGGTGGTGTC 42338
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||| | || ||| | |||| || |||| | | |||| | ||||||||||| ||
Sbjct 42337 AAGAGAATCAGCGGACTCATCTACGAGGAGACGAGAGGTGTTCTCAAGATCTTCCTTGAG 42278
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| || | ||| || | ||||| |||||||||| || ||||| || || ||
Sbjct 42277 AACGTCATTCGTGACTCTGTTACTTATACAGAGCACGCTAGGCGGAAGACGGTGACTGCC 42218
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||||| | || ||||| | || | || ||| | | ||||||| ||||| ||| |
Sbjct 42217 ATGGATGTGGTTTATGCTCTCAAGAGACAGGGCAGGACTCTTTATGGATTTGGCGGTTGA 42158
Query 16700 T 16700
|
Sbjct 42157 T 42157
>seq17772
Length=12362
Score = 82.4 bits (90), Expect = 1e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| |||||||||||||| || || |||||||| ||||| | || ||||
Sbjct 8220 GAGACAACATCCAGGGAATCACCAAGCCTGCCATTCGTCGTCTAGCTCGGAGAGGCGGAG 8161
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|||||||| || || | |||| || |||| | | ||| | ||||||||
Sbjct 8160 TCAAGCGTATCAGCGGTCTCATCTACGAGGAGACCAGAGGAGTTCTCAAGATCTT 8106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 78720820092642
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |