Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq5412 448 6e-121 seq29420 264 1e-65 seq25216 221 2e-52 seq8546 199 5e-46 seq59 179 5e-40 seq8630 111 2e-19 seq3927 107 2e-18 seq4835 91.5 2e-13 seq1564 82.4 1e-10 >seq5412 Length=31808 Score = 448 bits (496), Expect = 6e-121 Identities = 515/685 (75%), Gaps = 16/685 (2%) Strand=Plus/Minus Query 135432 TGATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGC 135489 ||||||||||||| ||| | | | || | ||| | |||||| | || ||||| ||||| Sbjct 15271 TGATGATTCCTAC-CTTATTGACCGCAAC-ATCCGTATTTATTATAGCCTTCATTGCTGC 15214 Query 135490 ACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAA 135549 ||||| || |||||||| || || || ||||||||| ||| ||||| | |||||||| Sbjct 15213 TCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTCTTTACGGAAA 15154 Query 135550 TAACATCATCTCTGGTGCTGTTATCC---CTTCTAGCAACGCCATCGGCCTTCACTTCTA 135606 || || ||||||||||| |||| | ||| | || || || || | ||||| || Sbjct 15153 CAATATTATCTCTGGTGCCATTATTCAGACTTTT-GCT--GCTATAGGTTTGCACTTTTA 15097 Query 135607 TCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACT 135666 ||| || ||||||||||| ||| ||||||| ||| |||| ||||||||||| ||| | || Sbjct 15096 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCATATGAGCT 15037 Query 135667 AGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTC 135726 | | || || |||||| | | ||||| | |||||||||||| ||||||||||| Sbjct 15036 AATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 14977 Query 135727 TTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGC 135786 || ||| ||||||||||||||||||||| ||| || || |||||||||||||| |||| Sbjct 14976 TTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTGCGACTGC 14917 Query 135787 TACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCT 135846 ||||||||||||| || ||||||| |||| |||| || | |||||||||| || Sbjct 14916 TACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTATGCCTCT 14857 Query 135847 TGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCAT 135906 || |||||||| ||||| |||| |||| |||| |||||||| || |||||||| || || Sbjct 14856 AGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 14797 Query 135907 GCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTAT 135966 ||| || || |||||||| || || ||||| || |||| || | || ||| | Sbjct 14796 GCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC------AG 14743 Query 135967 GCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAA 136026 |||||| ||| | || ||||| ||| | | | || || || || ||||| || Sbjct 14742 GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAA 14683 Query 136027 CTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTA 136086 | ||||||| | | |||||||| ||||||||||| || || || |||||||||||||| Sbjct 14682 TGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTCATGGTTA 14623 Query 136087 CTTCGGTCGTCTGATCTTCCAATAT 136111 || || || | |||||||||||| Sbjct 14622 TTTTGGCCGATTAATCTTCCAATAT 14598 >seq29420 Length=7120 Score = 264 bits (292), Expect = 1e-65 Identities = 278/363 (77%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 135487 TGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGG 135546 ||| ||||| || |||||||| || || || ||||||||| |||| ||||| | |||| Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 135547 AAATAACATCATCTCTGGTGCTGTTATCCC---TTCTAGCAACGCCATCGGCCTTCACTT 135603 ||| || || |||||||||| |||| || |||| || || || || | ||||| Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCT-GCT--GCTATAGGTTTGCACTT 3531 Query 135604 CTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCA 135663 ||||| || ||||||||||| ||| ||||||| ||| |||| ||||||||||||||| | Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591 Query 135664 ACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACT 135723 ||| || || |||||| | | ||||| | |||||||||||| ||||||||||| Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651 Query 135724 CTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGC 135783 || ||| ||||||||||||||||||||| ||| || || |||| |||||||| || Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711 Query 135784 TGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCC 135843 ||||||| || ||||| || ||||||| |||| ||||| || |||||||||||| Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771 Query 135844 GCT 135846 || Sbjct 3772 TCT 3774 >seq25216 Length=8180 Score = 221 bits (244), Expect = 2e-52 Identities = 202/255 (79%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 135737 GGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTT 135796 |||||||||||||||||| | | || || ||||| |||||||| ||||||||||||||| Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 135797 TTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCT 135856 ||| || ||||||| |||| ||||| || |||||||||||| || || |||||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 135857 GGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTC 135916 || ||||| |||| |||| |||| |||||| | || |||||||| || ||||| || || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 135917 CACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCT 135976 |||||||| || || | ||| || ||||| || || || ||| |||||||||||| ||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 135977 CTTGTCACCTCTAGT 135991 | || ||||| ||| Sbjct 7013 TTGGTAACCTCGAGT 6999 >seq8546 Length=31398 Score = 199 bits (220), Expect = 5e-46 Identities = 291/411 (71%), Gaps = 4/411 (1%) Strand=Plus/Minus Query 135917 CACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCT 135976 |||||||| || || ||||| || ||||| || || | ||| || ||||||||| ||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 135977 CTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTAC 136036 | || ||||||||| | | | || || || || ||||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 136037 AAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGT 136096 | || |||||||| || || ||| | || ||||| |||||||||||||| || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 136097 CTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCT 136156 | |||||||||||||| |||||| | |||| ||| |||| || ||| | | |||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 136157 TGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTC 136216 |||||||| || ||||| |||||| || | | || | ||| ||||| || | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 136217 AATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGG 136276 || || ||||| |||||||| || | || | | ||||||||||| | | ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTGG 12849 Query 136277 GCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||| | | || || ||| || |||||||| || ||||| || ||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGT 12798 >seq59 Length=339703 Score = 179 bits (198), Expect = 5e-40 Identities = 192/254 (76%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 135832 TGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGA 135891 |||||||||||| || || ||||||| ||||| |||| |||| |||| ||||| || || Sbjct 52314 TGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGA 52373 Query 135892 ACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTC 135951 |||||||| || ||||| || || |||||||| | || ||||| || ||||| || || Sbjct 52374 GCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTC 52433 Query 135952 TCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGA 136011 || ||| || ||||||||| ||| | || ||||| ||| | | | || || || || Sbjct 52434 CCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACCACAGA 52493 Query 136012 GGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGT 136071 ||||| || | ||||||| ||| |||||||| ||||||||||| || ||||| Sbjct 52494 AAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATATTGT 52553 Query 136072 TGCTGCTCATGGTT 136085 ||| ||||||||| Sbjct 52554 AGCTACTCATGGTT 52567 >seq8630 Length=23577 Score = 111 bits (122), Expect = 2e-19 Identities = 105/133 (79%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTT-GCTGCTCATGGTTACTT 136089 |||||||| || |||||||| || || ||||| || || || |||||||||||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 136090 CGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCT 136149 ||||| | |||||||||||||| |||||||| |||||||| |||| || || | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 136150 TGCTGCTTGGCCT 136162 || ||||||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq3927 Length=49767 Score = 107 bits (118), Expect = 2e-18 Identities = 175/248 (71%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 138153 TGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTT 138212 ||||||||||| || ||||| || || ||| | || || || || ||| | || || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 138213 GAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCC 138269 || | |||| |||| | || | || || || || ||||| ||||| | |||||| Sbjct 26067 GAACTTGCTCGATCTGTT---CAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCA 26123 Query 138270 ATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTT 138329 || || | || || ||||| || || ||||| | ||||| || ||||||||||| Sbjct 26124 ATTGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTT 26183 Query 138330 GCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCAT 138389 || || |||||||| ||| | || || |||||| | | || |||| || || ||| Sbjct 26184 GCGCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCAT 26242 Query 138390 AACTGGAC 138397 || ||||| Sbjct 26243 AATTGGAC 26250 >seq4835 Length=43218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| || |||||||| || || ||||| || || || |||||||||||||| || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTC----GCTACACTTTTT 136146 || | | |||||||||||||| |||||||| |||||||| |||| || || Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 136147 CCTTGCTGCTTGGCCT 136162 | || ||||||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 >seq1564 Length=57605 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 135740 ATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTC 135799 ||||||||||||||| ||| || || ||||| ||| |||| |||||||||||| ||||| Sbjct 41602 ATGCGCCCTTGGATTGCTGTTGCGTATTCAGCTCCTATTGCGGCTGCTACTGCTATTTTC 41661 Query 135800 CTGGTCTACCCCTTTGGACAAGG 135822 || ||||||| ||| ||||| Sbjct 41662 TTGATCTACCCAATTGTTCAAGG 41684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624925542137600