Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 334 2e-87
seq8546 194 5e-45
seq29420 172 2e-38
seq59 163 8e-36
seq25216 161 3e-35
seq8630 100 8e-17
seq4835 87.8 5e-13
>seq5412
Length=31808
Score = 334 bits (370), Expect = 2e-87
Identities = 494/696 (71%), Gaps = 14/696 (2%)
Strand=Plus/Minus
Query 19336 GGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCT 19395
||||||| || | ||||||||| |||| | | || || | ||||| | ||||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224
Query 19396 TTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAA 19455
| || || || || || |||||||| ||||| || ||||| || |||| || || |
Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164
Query 19456 TGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGC 19515
| ||||||||||||||||| ||||| || | ||| | | ||| ||||| |||
Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104
Query 19516 ACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCAT 19575
|||||||||| || |||||||| | || | ||||| ||||||||||| || |||||||
Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044
Query 19576 ATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGG 19635
|| | || |||| || ||||||||| | || ||||| ||| ||| | ||||||
Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984
Query 19636 AACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTAT 19695
|||| || | | | || ||| | || ||||| | || || ||| |||| || |
Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924
Query 19696 CAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGT 19754
| | ||| |||||| ||||| | | |||||| |||| |||| || ||| | |||||
Sbjct 14923 CGACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 19755 ATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAAT 19814
|||||||| || || ||||||||||| ||||| ||| | |||||||| || || |||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 19815 ATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTC 19874
||||||||||| || || |||||| | || || ||||| ||||||| || | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 19875 TCTGCTATGCACGGAAGTTTGGTTACTTCCTCGA---TCATCAAGGAAACAACTGAGGAT 19931
| ||| || |||||| | |||||| | |||| |||||| || || ||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAA---CCTCGAGTTTGATCAGGGAAACCACAGAAAAT 14694
Query 19932 GTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCT 19991
| ||| || | || || | | | || ||||| |||||||| |||||||| || |||
Sbjct 14693 GAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCT 14634
Query 19992 GCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027
|| || || || ||||| |||| || || ||||||
Sbjct 14633 GCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
>seq8546
Length=31398
Score = 194 bits (214), Expect = 5e-45
Identities = 310/442 (70%), Gaps = 6/442 (1%)
Strand=Plus/Minus
Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892
|||||| | || || ||||| |||||||| || || | ||| || |||||| || |
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952
||||| || || | |||| |||||| || || || ||| || | || ||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012
| || || ||||| || || || | |||||||| ||||| || || || ||||| ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACT 20072
|| || || ||||||||| |||||| |||||| ||||||||||||||| | | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 20073 TTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTT 20132
| || || || || |||||| |||| | | || || | |||||||| || | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 20133 AATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATG 20191
|| || || || || ||||| || ||||||||| ||||| || |||| ||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAAT----TATTG 12850
Query 20192 GGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCA 20251
||| ||| | | || | |||||||| || | ||||||||||| || || ||||||||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 20252 TAACTTCCCACTTGATTTAGCT 20273
|||||||| || || |||||
Sbjct 12789 TAACTTCCATCTAGACCTAGCT 12768
>seq29420
Length=7120
Score = 172 bits (190), Expect = 2e-38
Identities = 258/361 (71%), Gaps = 4/361 (1%)
Strand=Plus/Plus
Query 19404 GCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGA 19463
|| || || |||||||| ||||| || ||||| || ||||| || || | | |||||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 19464 AACAATATTATTTCTGGAG-CAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTA 19522
||||||||||| ||||| | || || |||| | || ||| ||||| ||||||||||
Sbjct 3476 AACAATATTATCTCTGGTGACATTA-TTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 19523 TCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACT 19582
||| || |||||||| | || | ||||| ||||||||||| || ||||| ||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 19583 TGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATC 19642
||| || ||||||||| | || ||||| ||| ||| | ||||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 19643 TTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGC 19702
|| | | | || ||| | || ||||| || || ||| ||| || | | || ||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 19703 TCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTC 19761
| | || | ||||| | | |||||| |||| ||||| || ||| ||||||||||||||
Sbjct 3715 TACTACTAT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773
Query 19762 T 19762
|
Sbjct 3774 T 3774
>seq59
Length=339703
Score = 163 bits (180), Expect = 8e-36
Identities = 190/255 (75%), Gaps = 6/255 (2%)
Strand=Plus/Plus
Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807
||||||||||||||| || | ||||||||||| ||||| ||| | |||||||| || ||
Sbjct 52314 TGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGA 52373
Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867
||||| ||||||||||| || || |||||| | | || ||||| |||||||| || ||
Sbjct 52374 GCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTC 52433
Query 19868 TCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGA---TCATCAAGGAAACAAC 19924
|| ||| || |||||| || |||||| | |||||| | || | |||||| ||
Sbjct 52434 CCTATTCAGTGTTATGCATGGTTCTTTGGTAA---CCTCGAGTTTGATTAGGGAAACCAC 52490
Query 19925 TGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATAT 19984
|| ||| ||| || | || || | ||| || ||||| |||||||| ||||||||
Sbjct 52491 AGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATAT 52550
Query 19985 TGTCGCTGCACACGG 19999
||| ||| | || ||
Sbjct 52551 TGTAGCTACTCATGG 52565
>seq25216
Length=8180
Score = 161 bits (178), Expect = 3e-35
Identities = 174/228 (76%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 19677 GCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCA 19735
|| ||| |||| || | | || ||| |||||| ||||| | | |||||| |||| ||
Sbjct 7229 GCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCA 7171
Query 19736 AGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 19795
||| || ||| ||||||||||||||| || || ||||||||||| ||||| ||| | ||
Sbjct 7170 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 7111
Query 19796 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGT 19855
|||||| | || ||||| ||||||||||| || || |||||| | || || | ||| ||
Sbjct 7110 ATTCCAGTCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGATGGTGT 7051
Query 19856 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903
|||||| || || || ||| ||||||||| || |||||| || ||
Sbjct 7050 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC 7003
>seq8630
Length=23577
Score = 100 bits (110), Expect = 8e-17
Identities = 93/117 (79%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGT-CGCTGCACACGGGTACTT 20005
|| || || || || ||||| || || || || ||||| || |||||| || || || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 20006 TGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT 20062
||| |||| || || ||||||||| |||||| |||||||||||||||||||||||
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613
>seq4835
Length=43218
Score = 87.8 bits (96), Expect = 5e-13
Identities = 86/111 (77%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015
|| || ||||| || || || || ||||| || ||||| || || || ||||| |||||
Sbjct 9068 TTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTTGGCAGATTC 9127
Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCT----TTACATTTCTT 20062
|| || ||||||||| |||||| || ||||||||| |||||||||||
Sbjct 9128 ATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143776781717064
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