Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq5412 334 2e-87 seq8546 194 5e-45 seq29420 172 2e-38 seq59 163 8e-36 seq25216 161 3e-35 seq8630 100 8e-17 seq4835 87.8 5e-13 >seq5412 Length=31808 Score = 334 bits (370), Expect = 2e-87 Identities = 494/696 (71%), Gaps = 14/696 (2%) Strand=Plus/Minus Query 19336 GGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCT 19395 ||||||| || | ||||||||| |||| | | || || | ||||| | |||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224 Query 19396 TTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAA 19455 | || || || || || |||||||| ||||| || ||||| || |||| || || | Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164 Query 19456 TGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGC 19515 | ||||||||||||||||| ||||| || | ||| | | ||| ||||| ||| Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104 Query 19516 ACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCAT 19575 |||||||||| || |||||||| | || | ||||| ||||||||||| || ||||||| Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044 Query 19576 ATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGG 19635 || | || |||| || ||||||||| | || ||||| ||| ||| | |||||| Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984 Query 19636 AACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTAT 19695 |||| || | | | || ||| | || ||||| | || || ||| |||| || | Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924 Query 19696 CAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGT 19754 | | ||| |||||| ||||| | | |||||| |||| |||| || ||| | ||||| Sbjct 14923 CGACTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 19755 ATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAAT 19814 |||||||| || || ||||||||||| ||||| ||| | |||||||| || || ||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 19815 ATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTC 19874 ||||||||||| || || |||||| | || || ||||| ||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 19875 TCTGCTATGCACGGAAGTTTGGTTACTTCCTCGA---TCATCAAGGAAACAACTGAGGAT 19931 | ||| || |||||| | |||||| | |||| |||||| || || || Sbjct 14744 ------AGGCATGGTTCTTTGGTAA---CCTCGAGTTTGATCAGGGAAACCACAGAAAAT 14694 Query 19932 GTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCT 19991 | ||| || | || || | | | || ||||| |||||||| |||||||| || ||| Sbjct 14693 GAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCT 14634 Query 19992 GCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 || || || || ||||| |||| || || |||||| Sbjct 14633 GCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq8546 Length=31398 Score = 194 bits (214), Expect = 5e-45 Identities = 310/442 (70%), Gaps = 6/442 (1%) Strand=Plus/Minus Query 19833 CACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGT 19892 |||||| | || || ||||| |||||||| || || | ||| || |||||| || | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 19893 TTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTAT 19952 ||||| || || | |||| |||||| || || || ||| || | || || Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 19953 AAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGA 20012 | || || ||||| || || || | |||||||| ||||| || || || ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 20013 TTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACT 20072 || || || ||||||||| |||||| |||||| ||||||||||||||| | | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 20073 TTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTT 20132 | || || || || |||||| |||| | | || || | |||||||| || | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 20133 AATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATG 20191 || || || || || ||||| || ||||||||| ||||| || |||| || Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAAT----TATTG 12850 Query 20192 GGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCA 20251 ||| ||| | | || | |||||||| || | ||||||||||| || || |||||||| Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 20252 TAACTTCCCACTTGATTTAGCT 20273 |||||||| || || ||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCT 12768 >seq29420 Length=7120 Score = 172 bits (190), Expect = 2e-38 Identities = 258/361 (71%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 19404 GCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGA 19463 || || || |||||||| ||||| || ||||| || ||||| || || | | ||||| Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 19464 AACAATATTATTTCTGGAG-CAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTA 19522 ||||||||||| ||||| | || || |||| | || ||| ||||| |||||||||| Sbjct 3476 AACAATATTATCTCTGGTGACATTA-TTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 19523 TCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACT 19582 ||| || |||||||| | || | ||||| ||||||||||| || ||||| ||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 19583 TGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATC 19642 ||| || ||||||||| | || ||||| ||| ||| | |||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 19643 TTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGC 19702 || | | | || ||| | || ||||| || || ||| ||| || | | || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 19703 TCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTC 19761 | | || | ||||| | | |||||| |||| ||||| || ||| |||||||||||||| Sbjct 3715 TACTACTAT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773 Query 19762 T 19762 | Sbjct 3774 T 3774 >seq59 Length=339703 Score = 163 bits (180), Expect = 8e-36 Identities = 190/255 (75%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 19748 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 19807 ||||||||||||||| || | ||||||||||| ||||| ||| | |||||||| || || Sbjct 52314 TGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCATGCTGA 52373 Query 19808 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATC 19867 ||||| ||||||||||| || || |||||| | | || ||||| |||||||| || || Sbjct 52374 GCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGCGGCTC 52433 Query 19868 TCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGA---TCATCAAGGAAACAAC 19924 || ||| || |||||| || |||||| | |||||| | || | |||||| || Sbjct 52434 CCTATTCAGTGTTATGCATGGTTCTTTGGTAA---CCTCGAGTTTGATTAGGGAAACCAC 52490 Query 19925 TGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATAT 19984 || ||| ||| || | || || | ||| || ||||| |||||||| |||||||| Sbjct 52491 AGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAATAT 52550 Query 19985 TGTCGCTGCACACGG 19999 ||| ||| | || || Sbjct 52551 TGTAGCTACTCATGG 52565 >seq25216 Length=8180 Score = 161 bits (178), Expect = 3e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19677 GCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCA 19735 || ||| |||| || | | || ||| |||||| ||||| | | |||||| |||| || Sbjct 7229 GCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCA 7171 Query 19736 AGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGT 19795 ||| || ||| ||||||||||||||| || || ||||||||||| ||||| ||| | || Sbjct 7170 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 7111 Query 19796 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGT 19855 |||||| | || ||||| ||||||||||| || || |||||| | || || | ||| || Sbjct 7110 ATTCCAGTCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGATGGTGT 7051 Query 19856 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903 |||||| || || || ||| ||||||||| || |||||| || || Sbjct 7050 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC 7003 >seq8630 Length=23577 Score = 100 bits (110), Expect = 8e-17 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGT-CGCTGCACACGGGTACTT 20005 || || || || || ||||| || || || || ||||| || |||||| || || || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 20006 TGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT 20062 ||| |||| || || ||||||||| |||||| ||||||||||||||||||||||| Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613 >seq4835 Length=43218 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 19956 TTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTG 20015 || || ||||| || || || || ||||| || ||||| || || || ||||| ||||| Sbjct 9068 TTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTTGGCAGATTC 9127 Query 20016 ATATTTCAATATGCTTCTTTCAATAATTCTCGTTCT----TTACATTTCTT 20062 || || ||||||||| |||||| || ||||||||| ||||||||||| Sbjct 9128 ATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143776781717064