Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 311 1e-79
seq8546 183 5e-41
seq29420 168 1e-36
seq25216 165 1e-35
seq59 140 5e-28
seq7 107 3e-18
>seq5412
Length=31808
Score = 311 bits (344), Expect = 1e-79
Identities = 486/693 (70%), Gaps = 8/693 (1%)
Strand=Plus/Minus
Query 211616 GGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCA 211674
||||||| ||| | ||||| || | ||| | | | |||||| | ||||| ||||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCC-TACCTTATTGACCGCAACATCCGTATTTATTATAGCC 15225
Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734
||||| || || ||||| || ||||| || || || |||||||| || ||| || |
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794
| || || ||||| || ||||||||||| || ||| ||| || || |||||
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854
||||| ||||| || |||||||| ||| || ||||||| ||| | ||||||||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 211855 TACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGG 211914
|| || | | | || |||||| | | || | | |||||||| | |||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 211915 GAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTA 211974
|||||| | |||| | |||||||| |||||||| |||||| |||||||| |||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 211975 TCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGT 212034
| | ||| ||||| ||| | | |||||| | ||| | || || || | |||
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 212035 ATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAAC 212094
|||||| |||| || || || || |||||||||||| | |||||||| || || || |||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 212095 ATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTC 212154
||||||||||||||||| || ||| ||| || || ||| | |||| || |||||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 212155 TCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGAT 212214
| ||| |||||| | || || || | ||| | |||||||| | ||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 212215 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCA 212274
|| || | ||||||| | | || ||||| |||||||| ||||| ||||| |||||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 212275 CATGGATACTTCGGTAGACTTATCTTCCAGTAT 212307
||||| || || || || | |||||||| |||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 212420 TCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATG 212479
|||| ||||||||||| || |||||| |||| || || |||||||| ||||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 212480 TTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCC 212539
|| ||||| | | ||||||||||||||||||||||| ||| | ||||| | |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 212540 CACTTGACTTAGCA 212553
| || ||| |||||
Sbjct 14476 CTCTCGACCTAGCA 14463
>seq8546
Length=31398
Score = 183 bits (202), Expect = 5e-41
Identities = 308/442 (70%), Gaps = 8/442 (2%)
Strand=Plus/Minus
Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172
|| ||| ||| || || ||| | ||||| || | ||||| || |||||| ||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT-TAGATTCACAGAACTATGGTTA 212231
| || || ||| | ||| | |||||||| | || || | | || | |||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCT-AATGAAGGTTA 13086
Query 212232 CAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAG 212291
|| || || ||||| || || || | || || || ||||| ||||| || || || |
Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026
Query 212292 ACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATC 212351
| | |||||||| ||||| |||||| | |||||| |||||| | | |
Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966
Query 212352 ATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCT 212411
|||||||| | || ||||||| || || | ||||| | || |||||||| | |||
Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906
Query 212412 AAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGT-TCCTACTT 212470
||| || ||||| ||||||||||| || |||||| || ||||| || | | ||
Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGAT-----AGTCAAGGTCGTGTAATTATT 12851
Query 212471 GGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCAC 212530
||| ||| || ||||| | || ||||||||||||||||||||||| ||| | ||||| |
Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791
Query 212531 ACAACTTCCCACTTGACTTAGC 212552
| ||||||| || ||| ||||
Sbjct 12790 ATAACTTCCATCTAGACCTAGC 12769
>seq29420
Length=7120
Score = 168 bits (186), Expect = 1e-36
Identities = 254/361 (70%), Gaps = 0/361 (0%)
Strand=Plus/Plus
Query 211684 GCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGT 211743
|| ||||| || ||||| || || || |||||||| || |||| || | | | ||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 211744 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTAT 211803
||||| || |||||||||| || |||| |||| || || ||||| ||||| |||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 211804 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTG 211863
|| || |||||||| ||| || ||||||| ||| | ||||||||||||||||| || |
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 211864 GTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCA 211923
| || |||||| | | || | | |||||||| | |||||||||||
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 211924 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCT 211983
| |||| | |||||||| |||||||| |||||| ||||||| ||||| | || |||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 211984 TTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTA 212043
|| | ||| | | |||||| | ||||| || || || || ||||||||| ||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTA 3775
Query 212044 G 212044
|
Sbjct 3776 G 3776
>seq25216
Length=8180
Score = 165 bits (182), Expect = 1e-35
Identities = 189/254 (74%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989
|| |||||||| |||||||| | |||| |||||||| ||||| | || ||| |||
Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197
Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049
|| ||| | | |||||| | ||||| || || || || ||||||||| |||| ||
Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137
Query 212050 TCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 212109
|| || || |||||||||||| | |||||||| | || || ||||||||||||||||||
Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077
Query 212110 TTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGT 212169
|| || ||| ||| || | ||| | ||||| || | ||||| ||||||||| |||
Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017
Query 212170 TCTCTTGTTACATC 212183
||| | || || ||
Sbjct 7016 TCTTTGGTAACCTC 7003
>seq59
Length=339703
Score = 140 bits (154), Expect = 5e-28
Identities = 185/257 (72%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082
|| || || ||||||||| |||| | || || || |||||||||||| | ||||||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142
|| || || |||||||||||||||||||| || ||| | | || || ||| | |||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACC 212202
|| | ||||| || |||||| |||||| | || || || | || | ||||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 212203 ACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAAC 212262
|| | || || || | ||||||| ||| || ||||| |||||||| |||||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 212263 ATCGTTGCTGCACATGG 212279
|| || ||| | |||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq7
Length=712593
Score = 107 bits (118), Expect = 3e-18
Identities = 134/181 (74%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642
||| ||| || ||| | || |||||||||||||| || ||||| || ||| |||
Sbjct 78177 GAAGCCTCGGTTCGTAATCCTAGCTGCTGCTAAGGTCGGAGGTATCCATGCCAACAATAC 78118
Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702
|| ||||||||||||||| || ||| || ||| ||||| ||||| || | ||||
Sbjct 78117 ATACCCTGCCGATTTCATCGCTGTCAACCTACAGATCCAGACCAATGTAATACACTCTGC 78058
Query 194703 ATATCGTA-ATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGT 194761
|| ||| |||| || |||| || ||||| || || || |||||||| ||||||||||
Sbjct 78057 TTA-CGTCCATGGCGTCCAGAAGCTTTTGTTCCTTGGATCGTCTTGCATTTATCCTAAGT 77999
Query 194762 T 194762
|
Sbjct 77998 T 77998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 803642655622640
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