Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5412 311 1e-79 seq8546 183 5e-41 seq29420 168 1e-36 seq25216 165 1e-35 seq59 140 5e-28 seq7 107 3e-18 >seq5412 Length=31808 Score = 311 bits (344), Expect = 1e-79 Identities = 486/693 (70%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 211616 GGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCA 211674 ||||||| ||| | ||||| || | ||| | | | |||||| | ||||| |||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCC-TACCTTATTGACCGCAACATCCGTATTTATTATAGCC 15225 Query 211675 TTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTC 211734 ||||| || || ||||| || ||||| || || || |||||||| || ||| || | Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 211735 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTA 211794 | || || ||||| || ||||||||||| || ||| ||| || || ||||| Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 211795 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCT 211854 ||||| ||||| || |||||||| ||| || ||||||| ||| | |||||||||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 211855 TACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGG 211914 || || | | | || |||||| | | || | | |||||||| | ||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 211915 GAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTA 211974 |||||| | |||| | |||||||| |||||||| |||||| |||||||| ||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 211975 TCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGT 212034 | | ||| ||||| ||| | | |||||| | ||| | || || || | ||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 212035 ATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAAC 212094 |||||| |||| || || || || |||||||||||| | |||||||| || || || ||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 212095 ATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTC 212154 ||||||||||||||||| || ||| ||| || || ||| | |||| || ||||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 212155 TCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGAT 212214 | ||| |||||| | || || || | ||| | |||||||| | || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 212215 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCA 212274 || || | ||||||| | | || ||||| |||||||| ||||| ||||| ||||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 212275 CATGGATACTTCGGTAGACTTATCTTCCAGTAT 212307 ||||| || || || || | |||||||| ||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212420 TCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATG 212479 |||| ||||||||||| || |||||| |||| || || |||||||| |||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 212480 TTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCC 212539 || ||||| | | ||||||||||||||||||||||| ||| | ||||| | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 212540 CACTTGACTTAGCA 212553 | || ||| ||||| Sbjct 14476 CTCTCGACCTAGCA 14463 >seq8546 Length=31398 Score = 183 bits (202), Expect = 5e-41 Identities = 308/442 (70%), Gaps = 8/442 (2%) Strand=Plus/Minus Query 212113 CATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCT 212172 || ||| ||| || || ||| | ||||| || | ||||| || |||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 212173 CTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT-TAGATTCACAGAACTATGGTTA 212231 | || || ||| | ||| | |||||||| | || || | | || | ||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCT-AATGAAGGTTA 13086 Query 212232 CAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAG 212291 || || || ||||| || || || | || || || ||||| ||||| || || || | Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 212292 ACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATC 212351 | | |||||||| ||||| |||||| | |||||| |||||| | | | Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 212352 ATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCT 212411 |||||||| | || ||||||| || || | ||||| | || |||||||| | ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 212412 AAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGT-TCCTACTT 212470 ||| || ||||| ||||||||||| || |||||| || ||||| || | | || Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGAT-----AGTCAAGGTCGTGTAATTATT 12851 Query 212471 GGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCAC 212530 ||| ||| || ||||| | || ||||||||||||||||||||||| ||| | ||||| | Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791 Query 212531 ACAACTTCCCACTTGACTTAGC 212552 | ||||||| || ||| |||| Sbjct 12790 ATAACTTCCATCTAGACCTAGC 12769 >seq29420 Length=7120 Score = 168 bits (186), Expect = 1e-36 Identities = 254/361 (70%), Gaps = 0/361 (0%) Strand=Plus/Plus Query 211684 GCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGT 211743 || ||||| || ||||| || || || |||||||| || |||| || | | | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 211744 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTAT 211803 ||||| || |||||||||| || |||| |||| || || ||||| ||||| ||| Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 211804 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTG 211863 || || |||||||| ||| || ||||||| ||| | ||||||||||||||||| || | Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 211864 GTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCA 211923 | || |||||| | | || | | |||||||| | ||||||||||| Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655 Query 211924 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCT 211983 | |||| | |||||||| |||||||| |||||| ||||||| ||||| | || ||| Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715 Query 211984 TTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTA 212043 || | ||| | | |||||| | ||||| || || || || ||||||||| || Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTA 3775 Query 212044 G 212044 | Sbjct 3776 G 3776 >seq25216 Length=8180 Score = 165 bits (182), Expect = 1e-35 Identities = 189/254 (74%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989 || |||||||| |||||||| | |||| |||||||| ||||| | || ||| ||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049 || ||| | | |||||| | ||||| || || || || ||||||||| |||| || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 212050 TCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 212109 || || || |||||||||||| | |||||||| | || || |||||||||||||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 212110 TTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGT 212169 || || ||| ||| || | ||| | ||||| || | ||||| ||||||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 212170 TCTCTTGTTACATC 212183 ||| | || || || Sbjct 7016 TCTTTGGTAACCTC 7003 >seq59 Length=339703 Score = 140 bits (154), Expect = 5e-28 Identities = 185/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || || || ||||||||| |||| | || || || |||||||||||| | |||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 || || || |||||||||||||||||||| || ||| | | || || ||| | ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACC 212202 || | ||||| || |||||| |||||| | || || || | || | |||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 212203 ACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAAC 212262 || | || || || | ||||||| ||| || ||||| |||||||| ||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 212263 ATCGTTGCTGCACATGG 212279 || || ||| | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq7 Length=712593 Score = 107 bits (118), Expect = 3e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 ||| ||| || ||| | || |||||||||||||| || ||||| || ||| ||| Sbjct 78177 GAAGCCTCGGTTCGTAATCCTAGCTGCTGCTAAGGTCGGAGGTATCCATGCCAACAATAC 78118 Query 194643 CTATCCTGCCGATTTCATCTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGC 194702 || ||||||||||||||| || ||| || ||| ||||| ||||| || | |||| Sbjct 78117 ATACCCTGCCGATTTCATCGCTGTCAACCTACAGATCCAGACCAATGTAATACACTCTGC 78058 Query 194703 ATATCGTA-ATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGT 194761 || ||| |||| || |||| || ||||| || || || |||||||| |||||||||| Sbjct 78057 TTA-CGTCCATGGCGTCCAGAAGCTTTTGTTCCTTGGATCGTCTTGCATTTATCCTAAGT 77999 Query 194762 T 194762 | Sbjct 77998 T 77998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 803642655622640