Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq5412 293 3e-74 seq8546 219 5e-52 seq29420 152 6e-32 seq59 149 7e-31 seq25216 141 1e-28 seq8630 91.5 2e-13 seq4835 87.8 2e-12 >seq5412 Length=31808 Score = 293 bits (324), Expect = 3e-74 Identities = 454/646 (70%), Gaps = 8/646 (1%) Strand=Plus/Minus Query 170759 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 170818 || ||| |||| ||||| ||||||||||| || ||||| || || || | ||||| ||| Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 170819 GCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAA 170877 || ||| ||||| || || ||||| || ||||||||||| | ||| ||| Sbjct 15176 TTTGGATCTCTTCTT-TACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGC 15118 Query 170878 CGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTA 170937 || ||||| || ||||| ||||| || |||||||| || || | || || ||||| || Sbjct 15117 TGCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATA 15058 Query 170938 CAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACAT 170997 ||| || ||||| || || || || |||| |||||| | |||| | || ||||| Sbjct 15057 CAATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACAT 14998 Query 170998 GGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATA 171057 |||| | |||||||||| | | | || || ||| | |||||||| ||| || || Sbjct 14997 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTA 14938 Query 171058 CTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTC 171117 ||||| ||||| | | || ||| || ||| | | || ||| | ||| | || Sbjct 14937 TTCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAG 14878 Query 171118 ATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCA 171177 || ||| |||||||||| ||||| || || ||||| |||||||||||| | || ||||| Sbjct 14877 CTTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 14818 Query 171178 AGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 171237 || || |||||||| || |||||||| || || ||| ||| ||||| ||| | |||| Sbjct 14817 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGA 14758 Query 171238 TGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGAC 171297 || || ||||| ||| |||||| | || || || | | ||||| || || Sbjct 14757 CGGCTACCTATTCAG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAAC 14704 Query 171298 AACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAA 171357 || || || || | || | || || | | | || ||||| ||||| || ||||| Sbjct 14703 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAA 14644 Query 171358 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTAT 171403 || || ||||||||||| || || || ||||||||||||| ||| Sbjct 14643 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq8546 Length=31398 Score = 219 bits (242), Expect = 5e-52 Identities = 315/441 (71%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 171209 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268 || ||| ||| ||||| ||| | ||||| || | ||||||| ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 171269 CTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTAT 171328 | || || ||| | | ||||| || || || || || | || | || || Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 171329 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 171388 | || || ||||| || ||||| | || ||||| ||||||||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 171389 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTA 171448 || |||||||| ||||| |||||| | |||| ||| ||||| |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 171449 TTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTT 171508 | |||||||| || ||||||| || || | ||||| |||| |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 171509 AACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA-TG 171567 ||||| ||||| ||||||||||| ||||| || | | ||| | || | | || Sbjct 12904 AACGGCTTCAATTTCAACCAATC---TGTAGTTG--ATAGTCAAGGTCGTGTAATTATTG 12850 Query 171568 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627 || ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 171628 CAACTTCCCACTAGACCTAGC 171648 ||||||| ||||||||||| Sbjct 12789 TAACTTCCATCTAGACCTAGC 12769 >seq29420 Length=7120 Score = 152 bits (168), Expect = 6e-32 Identities = 253/363 (70%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 170779 TGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATG 170837 ||||||||| || ||||| || || || | ||||| ||| | || ||| ||||| | | Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTC-ACG 3473 Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897 | ||||| || |||||||||| | |||| |||| || ||||| || ||||| | Sbjct 3474 GAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTT 3533 Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGT 170957 |||| || |||||||| || || | || || ||||| ||||| || |||||||| || Sbjct 3534 ATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGC 3593 Query 170958 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 171017 || | |||| |||||| | |||| | || ||||||||| | |||||||||| Sbjct 3594 TAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 3653 Query 171018 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 171077 | | | || || ||| | |||||||| ||| || || |||| ||||| | || | Sbjct 3654 GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713 Query 171078 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 171137 | | | | ||| | | || ||| | ||||| || || |||||||||||||| | Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773 Query 171138 TAG 171140 ||| Sbjct 3774 TAG 3776 >seq59 Length=339703 Score = 149 bits (164), Expect = 7e-31 Identities = 187/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| ||||| | || ||||| |||||||||||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238 || || |||||||| || |||||||| || || ||| | | ||||| ||| | ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACA 171298 || || ||||||| ||||| |||||| | || || || | | || || || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 171299 ACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 171358 || || || || | || | || || | ||| || ||||| ||||| || ||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 171359 ATTGTTGCTGCTCATGG 171375 ||||| ||| ||||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq25216 Length=8180 Score = 141 bits (156), Expect = 1e-28 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 171029 GGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTA 171088 || ||| | |||||||| | | || || ||||| ||||| | || || ||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 171089 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 171148 ||| | | || ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 171149 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 171208 ||||| |||||||||||| | || ||||| | || |||||||| || |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 171209 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268 || ||| ||| |||| ||| | ||||| || || |||||||| ||||| |||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 171269 CTAGTGACATC 171279 | || || || Sbjct 7013 TTGGTAACCTC 7003 >seq8630 Length=23577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 171323 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTT-GCTGCTCATGGATACTT 171381 || || || || || ||||| || ||||| || || || || ||||||||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 171382 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTT 171438 ||| |||| |||||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613 >seq4835 Length=43218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391 || || ||||| || ||||| || || || || ||||||||||| || || || ||||| Sbjct 9068 TTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTTGGCAGATTC 9127 Query 171392 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTC----ATTACACTTCTT 171438 |||||||| ||||| |||||||| |||||||| |||||| ||||| Sbjct 9128 ATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567505890434160