Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 293 3e-74
seq8546 219 5e-52
seq29420 152 6e-32
seq59 149 7e-31
seq25216 141 1e-28
seq8630 91.5 2e-13
seq4835 87.8 2e-12
>seq5412
Length=31808
Score = 293 bits (324), Expect = 3e-74
Identities = 454/646 (70%), Gaps = 8/646 (1%)
Strand=Plus/Minus
Query 170759 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 170818
|| ||| |||| ||||| ||||||||||| || ||||| || || || | ||||| |||
Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177
Query 170819 GCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAA 170877
|| ||| ||||| || || ||||| || ||||||||||| | ||| |||
Sbjct 15176 TTTGGATCTCTTCTT-TACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGC 15118
Query 170878 CGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTA 170937
|| ||||| || ||||| ||||| || |||||||| || || | || || ||||| ||
Sbjct 15117 TGCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATA 15058
Query 170938 CAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACAT 170997
||| || ||||| || || || || |||| |||||| | |||| | || |||||
Sbjct 15057 CAATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACAT 14998
Query 170998 GGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATA 171057
|||| | |||||||||| | | | || || ||| | |||||||| ||| || ||
Sbjct 14997 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTA 14938
Query 171058 CTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTC 171117
||||| ||||| | | || ||| || ||| | | || ||| | ||| | ||
Sbjct 14937 TTCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAG 14878
Query 171118 ATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCA 171177
|| ||| |||||||||| ||||| || || ||||| |||||||||||| | || |||||
Sbjct 14877 CTTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCA 14818
Query 171178 AGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 171237
|| || |||||||| || |||||||| || || ||| ||| ||||| ||| | ||||
Sbjct 14817 GGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGA 14758
Query 171238 TGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGAC 171297
|| || ||||| ||| |||||| | || || || | | ||||| || ||
Sbjct 14757 CGGCTACCTATTCAG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAAC 14704
Query 171298 AACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAA 171357
|| || || || | || | || || | | | || ||||| ||||| || |||||
Sbjct 14703 CACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAA 14644
Query 171358 CATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTAT 171403
|| || ||||||||||| || || || ||||||||||||| |||
Sbjct 14643 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
>seq8546
Length=31398
Score = 219 bits (242), Expect = 5e-52
Identities = 315/441 (71%), Gaps = 6/441 (1%)
Strand=Plus/Minus
Query 171209 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268
|| ||| ||| ||||| ||| | ||||| || | ||||||| ||||| ||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 171269 CTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTAT 171328
| || || ||| | | ||||| || || || || || | || | || ||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 171329 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 171388
| || || ||||| || ||||| | || ||||| ||||||||||| || || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 171389 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTA 171448
|| |||||||| ||||| |||||| | |||| ||| ||||| |||||| | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 171449 TTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTT 171508
| |||||||| || ||||||| || || | ||||| |||| |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 171509 AACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA-TG 171567
||||| ||||| ||||||||||| ||||| || | | ||| | || | | ||
Sbjct 12904 AACGGCTTCAATTTCAACCAATC---TGTAGTTG--ATAGTCAAGGTCGTGTAATTATTG 12850
Query 171568 GGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 171627
|| ||| || ||||| | || |||||||| |||||||||||||||||| | ||||| ||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 171628 CAACTTCCCACTAGACCTAGC 171648
||||||| |||||||||||
Sbjct 12789 TAACTTCCATCTAGACCTAGC 12769
>seq29420
Length=7120
Score = 152 bits (168), Expect = 6e-32
Identities = 253/363 (70%), Gaps = 2/363 (1%)
Strand=Plus/Plus
Query 170779 TGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATG 170837
||||||||| || ||||| || || || | ||||| ||| | || ||| ||||| | |
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTC-ACG 3473
Query 170838 GTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCT 170897
| ||||| || |||||||||| | |||| |||| || ||||| || ||||| |
Sbjct 3474 GAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTT 3533
Query 170898 ATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGT 170957
|||| || |||||||| || || | || || ||||| ||||| || |||||||| ||
Sbjct 3534 ATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGC 3593
Query 170958 TAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTAT 171017
|| | |||| |||||| | |||| | || ||||||||| | ||||||||||
Sbjct 3594 TAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 3653
Query 171018 CATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAG 171077
| | | || || ||| | |||||||| ||| || || |||| ||||| | || |
Sbjct 3654 GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713
Query 171078 CATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCAC 171137
| | | | ||| | | || ||| | ||||| || || |||||||||||||| |
Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773
Query 171138 TAG 171140
|||
Sbjct 3774 TAG 3776
>seq59
Length=339703
Score = 149 bits (164), Expect = 7e-31
Identities = 187/257 (73%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178
|| |||||||||||||| ||||| | || ||||| |||||||||||| | || |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238
|| || |||||||| || |||||||| || || ||| | | ||||| ||| | |||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACA 171298
|| || ||||||| ||||| |||||| | || || || | | || || || ||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 171299 ACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 171358
|| || || || | || | || || | ||| || ||||| ||||| || |||||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 171359 ATTGTTGCTGCTCATGG 171375
||||| ||| |||||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq25216
Length=8180
Score = 141 bits (156), Expect = 1e-28
Identities = 182/251 (73%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 171029 GGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTA 171088
|| ||| | |||||||| | | || || ||||| ||||| | || || ||| ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 171089 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 171148
||| | | || ||| | ||||| || || |||||||||||||| ||||| || ||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 171149 GGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTC 171208
||||| |||||||||||| | || ||||| | || |||||||| || |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 171209 CATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCT 171268
|| ||| ||| |||| ||| | ||||| || || |||||||| ||||| ||||||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014
Query 171269 CTAGTGACATC 171279
| || || ||
Sbjct 7013 TTGGTAACCTC 7003
>seq8630
Length=23577
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/117 (78%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 171323 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTT-GCTGCTCATGGATACTT 171381
|| || || || || ||||| || ||||| || || || || ||||||||||| || ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 171382 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTT 171438
||| |||| |||||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTT 7613
>seq4835
Length=43218
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 4/111 (4%)
Strand=Plus/Plus
Query 171332 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 171391
|| || ||||| || ||||| || || || || ||||||||||| || || || |||||
Sbjct 9068 TTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTTGGCAGATTC 9127
Query 171392 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTC----ATTACACTTCTT 171438
|||||||| ||||| |||||||| |||||||| |||||| |||||
Sbjct 9128 ATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567505890434160
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