Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 143 3e-29
seq270 114 2e-20
>seq4197
Length=36674
Score = 143 bits (158), Expect = 3e-29
Identities = 406/614 (66%), Gaps = 15/614 (2%)
Strand=Plus/Plus
Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362
||| |||||||||||||||| || ||||| | || | ||||| || || || ||
Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478
Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422
||| ||||| || || |||||||| ||||||||||| | ||| |||||| |||||
Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538
Query 33423 GATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCGCTGTCAT 33478
||| ||||| || ||| ||||| |||| | | ||| | | | ||| |||
Sbjct 23539 GATACCTTCAAC-GCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA- 23596
Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538
||||| | ||||| ||||| ||||| | ||| || | || || ||||| |
Sbjct 23597 --ATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654
Query 33539 TAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGACTATAC 33597
||||| || || || || | ||| || || |||| | ||| || |||
Sbjct 23655 GGAAGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTAC 23713
Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657
||||| || || || || || || || ||||| || |||||||| | |||||||| |
Sbjct 23714 ATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAA 23773
Query 33658 ATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGC 33716
| ||| | || | || | | | || || | ||| || ||| || ||||| |||
Sbjct 23774 ACCTGGATCTC-CTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGC 23832
Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 33773
||| || || || | ||||| ||||| | || || || | ||||| || |
Sbjct 23833 TGCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTC 23892
Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833
||||| | || ||||| || | || || || || | ||||| || || || || ||
Sbjct 23893 CCAATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGC 23952
Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893
||| |||||||| | ||| ||| | ||| | ||| ||||| ||| |||| || ||
Sbjct 23953 CTTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGG 24012
Query 33894 ATTTGGTGCAAGGA 33907
||| | |||||||
Sbjct 24013 ATTGGAGGCAAGGA 24026
>seq270
Length=105985
Score = 114 bits (126), Expect = 2e-20
Identities = 400/621 (64%), Gaps = 5/621 (1%)
Strand=Plus/Plus
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
|||||||| || ||||| ||||| | || |||||||| || || |||||||| ||
Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417
|| | ||| ||||| || || || ||||| ||||| |||| || ||| ||| ||
Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAG 91905
Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33477
|||||||| ||||| || ||| || || | | || ||| | | || | |
Sbjct 91906 AAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAA 91965
Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537
| ||||| ||||| | ||||||||| | || ||| || || || || ||
Sbjct 91966 TCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCG 92025
Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597
| ||||| || || || | || || || | || | || || |||
Sbjct 92026 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTAC 92085
Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657
|| || ||||| ||||| |||| || ||||| || || ||||| | ||||||||
Sbjct 92086 ATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAG 92145
Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT-TCATTCACTATTCCGTCACTGGC 33716
| ||| | || | || | | ||||| | | || || || |||||||| |||
Sbjct 92146 ACCTGGATATCATT-CATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGC 92204
Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 33773
|| || || || | || || || |||| ||| ||||| | ||||| || |
Sbjct 92205 GGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTC 92264
Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833
||| | | |||||||| || || ||| || || || | ||||| || || || || ||
Sbjct 92265 CCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 92324
Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893
|| || ||||| | |||||| | |||||||||||||| || || | | ||
Sbjct 92325 TTTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTGA 92384
Query 33894 ATTTGGTGCAAGGATGGGTTC 33914
||| ||| | ||||| || ||
Sbjct 92385 ATTGGGTACGAGGATTGGCTC 92405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619929067537040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |