Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4197 143 3e-29 seq270 114 2e-20 >seq4197 Length=36674 Score = 143 bits (158), Expect = 3e-29 Identities = 406/614 (66%), Gaps = 15/614 (2%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| |||||||||||||||| || ||||| | || | ||||| || || || || Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 ||| ||||| || || |||||||| ||||||||||| | ||| |||||| ||||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAA 23538 Query 33423 GATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCGCTGTCAT 33478 ||| ||||| || ||| ||||| |||| | | ||| | | | ||| ||| Sbjct 23539 GATACCTTCAAC-GCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA- 23596 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | ||||| ||||| ||||| | ||| || | || || ||||| | Sbjct 23597 --ATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654 Query 33539 TAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || | ||| || || |||| | ||| || ||| Sbjct 23655 GGAAGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTAC 23713 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 ||||| || || || || || || || ||||| || |||||||| | |||||||| | Sbjct 23714 ATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAA 23773 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | ||| | || | || | | | || || | ||| || ||| || ||||| ||| Sbjct 23774 ACCTGGATCTC-CTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGC 23832 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 33773 ||| || || || | ||||| ||||| | || || || | ||||| || | Sbjct 23833 TGCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTC 23892 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||||| | || ||||| || | || || || || | ||||| || || || || || Sbjct 23893 CCAATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGC 23952 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 ||| |||||||| | ||| ||| | ||| | ||| ||||| ||| |||| || || Sbjct 23953 CTTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGG 24012 Query 33894 ATTTGGTGCAAGGA 33907 ||| | ||||||| Sbjct 24013 ATTGGAGGCAAGGA 24026 >seq270 Length=105985 Score = 114 bits (126), Expect = 2e-20 Identities = 400/621 (64%), Gaps = 5/621 (1%) Strand=Plus/Plus Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 |||||||| || ||||| ||||| | || |||||||| || || |||||||| || Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || | ||| ||||| || || || ||||| ||||| |||| || ||| ||| || Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAG 91905 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33477 |||||||| ||||| || ||| || || | | || ||| | | || | | Sbjct 91906 AAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGAGGAA 91965 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | ||||| ||||| | ||||||||| | || ||| || || || || || Sbjct 91966 TCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATTGCG 92025 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 | ||||| || || || | || || || | || | || || ||| Sbjct 92026 TGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCGAATTAGCGTTTGAATGAGGAGGCTGTAC 92085 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || ||||| ||||| |||| || ||||| || || ||||| | |||||||| Sbjct 92086 ATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTCGGAG 92145 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT-TCATTCACTATTCCGTCACTGGC 33716 | ||| | || | || | | ||||| | | || || || |||||||| ||| Sbjct 92146 ACCTGGATATCATT-CATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGAGGC 92204 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATT 33773 || || || || | || || || |||| ||| ||||| | ||||| || | Sbjct 92205 GGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTCCTC 92264 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 ||| | | |||||||| || || ||| || || || | ||||| || || || || || Sbjct 92265 CCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTCGGC 92324 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 || || ||||| | |||||| | |||||||||||||| || || | | || Sbjct 92325 TTTCTTGTACATCTCCCAGATCTTGGGGTATTGGATTGGGAACATGCAGAAGCGGTCTGA 92384 Query 33894 ATTTGGTGCAAGGATGGGTTC 33914 ||| ||| | ||||| || || Sbjct 92385 ATTGGGTACGAGGATTGGCTC 92405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619929067537040