Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 113 4e-20
seq45117 113 4e-20
seq4209 93.3 4e-14
seq184 82.4 7e-11
>seq48644
Length=2856
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | ||||| |||||| |||| || || |||| ||| | || | |||||
Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | || ||| ||||| ||||| ||||| || || || ||
Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | ||||| | || ||||||||| || || || | | | | | || ||||||
Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||||||||| || ||||| |||| ||||| ||
Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 1849
>seq45117
Length=3449
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | ||||| |||||| |||| || || |||| ||| | || | |||||
Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | || ||| ||||| ||||| ||||| || || || ||
Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | ||||| | || ||||||||| || || || | | | | | || ||||||
Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||||||||| || ||||| |||| ||||| ||
Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 2442
>seq4209
Length=73032
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827
||||| | ||||| |||||||| || ||||| | || ||| | || | || | | |
Sbjct 233 ATGCAGATCTTTGTGAAAACATTGACCGGAAAGACCATAACCCTAGAGGTTGAGAGCTCA 174
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||| || | ||||| ||||| ||||| |||||||| || || || ||
Sbjct 173 -GACACCATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCA 115
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|| | ||||| | | ||||| || ||||| |||| ||||| | | ||||||||
Sbjct 114 GCAGCGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGTAGAACCCTTGCTGACTATAA 55
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||| || || || |||||| |||| ||||| ||
Sbjct 54 CATCCAGAAGGAGTCTACTCTCCACCTGGTTCT 22
>seq184
Length=120086
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| | || || || |||| ||| |||| | |||||
Sbjct 5224 AAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATCC 5283
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | || || |||||| ||||| ||||| || || || ||
Sbjct 5284 TCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGAC 5343
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| ||| | || || | || ||| || || || || |||| ||| | || ||| ||
Sbjct 5344 CAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTAC 5403
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || || || ||||| || |||| ||||| ||
Sbjct 5404 AATATCCAGAAGGAATCGACGCTCCACCTGGTGCT 5438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476343316571680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |