Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq48644 113 4e-20 seq45117 113 4e-20 seq4209 93.3 4e-14 seq184 82.4 7e-11 >seq48644 Length=2856 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| |||||| |||| || || |||| ||| | || | ||||| Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || ||| ||||| ||||| ||||| || || || || Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || ||||||||| || || || | | | | | || |||||| Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||| || ||||| |||| ||||| || Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 1849 >seq45117 Length=3449 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| |||||| |||| || || |||| ||| | || | ||||| Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || ||| ||||| ||||| ||||| || || || || Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || ||||||||| || || || | | | | | || |||||| Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||||| || ||||| |||| ||||| || Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 2442 >seq4209 Length=73032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 ||||| | ||||| |||||||| || ||||| | || ||| | || | || | | | Sbjct 233 ATGCAGATCTTTGTGAAAACATTGACCGGAAAGACCATAACCCTAGAGGTTGAGAGCTCA 174 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | ||||| ||||| ||||| |||||||| || || || || Sbjct 173 -GACACCATAGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCA 115 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | | ||||| || ||||| |||| ||||| | | |||||||| Sbjct 114 GCAGCGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGTAGAACCCTTGCTGACTATAA 55 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || |||||| |||| ||||| || Sbjct 54 CATCCAGAAGGAGTCTACTCTCCACCTGGTTCT 22 >seq184 Length=120086 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| | || || || |||| ||| |||| | ||||| Sbjct 5224 AAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATCC 5283 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || || |||||| ||||| ||||| || || || || Sbjct 5284 TCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGAC 5343 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | || || | || ||| || || || || |||| ||| | || ||| || Sbjct 5344 CAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTAC 5403 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || ||||| || |||| ||||| || Sbjct 5404 AATATCCAGAAGGAATCGACGCTCCACCTGGTGCT 5438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476343316571680