Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq87 111 1e-19
seq9434 95.1 1e-14
seq48644 91.5 1e-13
seq45117 91.5 1e-13
seq184 86.0 5e-12
seq1982 82.4 7e-11
>seq87
Length=177581
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | ||||| || || || ||||| || | ||||| | ||||| ||| |
Sbjct 55350 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACTATTACTCTTGAAGTTGAGAGCTC 55291
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||| || | |||||| |||||| || || || || || ||||| || ||
Sbjct 55290 TGACACCATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATTCCTCCAGACCA 55231
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
|||||| |||| | | ||||||||||||||||||| || | | | ||||||||
Sbjct 55230 GCAGAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAA 55171
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||| || |||||||| || | ||||| |||
Sbjct 55170 CATCCAGAAAGAATCAACCCTGCATTTGGTG 55140
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| | || ||||| | ||||| | ||||| ||| |
Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | |||||| |||||| || || || || || || || || ||
Sbjct 55061 GACACAATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAG 55002
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| |||| | | |||||||||||||||||||| || | | | |||||||||
Sbjct 55001 CAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAAC 54942
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| || ||||| || || ||||||| ||
Sbjct 54941 ATCCAGAAAGAGTCCACCCTTCATTTGGT 54913
>seq9434
Length=50679
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || ||||| || ||||||| || | || || | ||||||||| |
Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | |||||| |||||| ||||| || || || || || |||||
Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 45730
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | |||||||||||| ||||||| || | | | |||||||||
Sbjct 45729 CAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAAC 45670
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || ||||| || | || || |||
Sbjct 45669 ATCCAGAAGGAATCCACCCTCCACTTGGTG 45640
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || | ||||| ||| | ||||| | ||||| ||| |
Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || ||| || || || || || || || || || ||
Sbjct 45561 GACACCATTGACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 45502
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | || |||||||||||||||| || | | |||||||||
Sbjct 45501 CAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATAAC 45442
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| || || ||| ||||||| ||
Sbjct 45441 ATCCAAAAGGAGTCAACACTTCATTTGGT 45413
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || ||||| ||||||||| | || ||| | || || || |
Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| || ||||| | || || || ||| ||||| ||||| || ||||| || ||
Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
||| | ||||| | | || |||||||| || |||| | | | | ||| ||||||||
Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCT-AGCTGATTATAA 44759
Query 24170 CATTCAAAAAGAATCTACAATTCA 24193
|||||| || || || || ||||
Sbjct 44758 CATTCAGAAGGAGTCCACCCTTCA 44735
>seq48644
Length=2856
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | ||||| |||||| |||| || || |||| ||| | || || || |
Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | || ||| ||||| ||||| |||||||| || || ||
Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || |||||| || || || || | | | | || ||| ||
Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||||||||| || |||||
Sbjct 1883 AACATTCAAAAGGAGTCTAC 1864
>seq45117
Length=3449
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | ||||| |||||| |||| || || |||| ||| | || || || |
Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | || ||| ||||| ||||| |||||||| || || ||
Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | || |||||| || || || || | | | | || ||| ||
Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||||||||| || |||||
Sbjct 2476 AACATTCAAAAGGAGTCTAC 2457
>seq184
Length=120086
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| | || || || |||| ||| |||| ||||| ||
Sbjct 5224 AAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATCC 5283
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | || || |||||| ||||| ||||| || || || ||
Sbjct 5284 TCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGAC 5343
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| || | || || | || ||| ||||| || || |||| | ||| | || ||||||
Sbjct 5344 CAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTAC 5403
Query 24168 AACATTCAAAAAGAATCTAC 24187
|| || || || ||||| ||
Sbjct 5404 AATATCCAGAAGGAATCGAC 5423
>seq1982
Length=56187
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| ||||| || || |||| ||| |||| || ||| |
Sbjct 21779 AAGATGCAGATCTTCGTGAAAACCTTAACGGGGAAGACGATAACCCTCGAGGTTGAGTCT 21838
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||||||||| | || || |||||| ||||| || || || || || ||
Sbjct 21839 TCCGACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCGGAC 21898
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
|| ||| |||| || | || ||| ||||| ||||||||
Sbjct 21899 CAGCAGCGACTCATCTTCGCCGGGAAGCAGCTCGAAGA 21936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427905067517070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |