Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq87 111 1e-19 seq9434 95.1 1e-14 seq48644 91.5 1e-13 seq45117 91.5 1e-13 seq184 86.0 5e-12 seq1982 82.4 7e-11 >seq87 Length=177581 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || ||||| || | ||||| | ||||| ||| | Sbjct 55350 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACTATTACTCTTGAAGTTGAGAGCTC 55291 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | |||||| |||||| || || || || || ||||| || || Sbjct 55290 TGACACCATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATTCCTCCAGACCA 55231 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | | ||||||||||||||||||| || | | | |||||||| Sbjct 55230 GCAGAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAA 55171 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || |||||||| || | ||||| ||| Sbjct 55170 CATCCAGAAAGAATCAACCCTGCATTTGGTG 55140 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || ||||| | ||||| | ||||| ||| | Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| || || || || || || || || || Sbjct 55061 GACACAATTGACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATCCCACCAGACCAG 55002 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | |||||||||||||||||||| || | | | ||||||||| Sbjct 55001 CAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAAC 54942 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || ||||| || || ||||||| || Sbjct 54941 ATCCAGAAAGAGTCCACCCTTCATTTGGT 54913 >seq9434 Length=50679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || ||||| || ||||||| || | || || | ||||||||| | Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||| || || || || || ||||| Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 45730 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | |||||||||||| ||||||| || | | | ||||||||| Sbjct 45729 CAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAAC 45670 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || | || || ||| Sbjct 45669 ATCCAGAAGGAATCCACCCTCCACTTGGTG 45640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | ||||| | ||||| ||| | Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||| || || || || || || || || || || Sbjct 45561 GACACCATTGACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 45502 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | || |||||||||||||||| || | | ||||||||| Sbjct 45501 CAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATAAC 45442 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || ||| ||||||| || Sbjct 45441 ATCCAAAAGGAGTCAACACTTCATTTGGT 45413 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| ||||||||| | || ||| | || || || | Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || || ||| ||||| ||||| || ||||| || || Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | ||||| | | || |||||||| || |||| | | | | ||| |||||||| Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCT-AGCTGATTATAA 44759 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 |||||| || || || || |||| Sbjct 44758 CATTCAGAAGGAGTCCACCCTTCA 44735 >seq48644 Length=2856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| |||||| |||| || || |||| ||| | || || || | Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | || ||| ||||| ||||| |||||||| || || || Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || |||||| || || || || | | | | || ||| || Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||||||||| || ||||| Sbjct 1883 AACATTCAAAAGGAGTCTAC 1864 >seq45117 Length=3449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| |||||| |||| || || |||| ||| | || || || | Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | || ||| ||||| ||||| |||||||| || || || Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || |||||| || || || || | | | | || ||| || Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||||||||| || ||||| Sbjct 2476 AACATTCAAAAGGAGTCTAC 2457 >seq184 Length=120086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| | || || || |||| ||| |||| ||||| || Sbjct 5224 AAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCGAATCC 5283 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | || || |||||| ||||| ||||| || || || || Sbjct 5284 TCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCACCAGAC 5343 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | || || | || ||| ||||| || || |||| | ||| | || |||||| Sbjct 5344 CAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCGATTAC 5403 Query 24168 AACATTCAAAAAGAATCTAC 24187 || || || || ||||| || Sbjct 5404 AATATCCAGAAGGAATCGAC 5423 >seq1982 Length=56187 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||| || || |||| ||| |||| || ||| | Sbjct 21779 AAGATGCAGATCTTCGTGAAAACCTTAACGGGGAAGACGATAACCCTCGAGGTTGAGTCT 21838 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | || || |||||| ||||| || || || || || || Sbjct 21839 TCCGACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCGGAC 21898 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||| |||| || | || ||| ||||| |||||||| Sbjct 21899 CAGCAGCGACTCATCTTCGCCGGGAAGCAGCTCGAAGA 21936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427905067517070