Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq87 102 7e-17
seq9434 93.3 4e-14
>seq87
Length=177581
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| ||||| |||||||| || |||||||| |||||||| | ||| ||| |
Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || ||| || ||| ||||| || || |||| || ||
Sbjct 55061 GACACAATTG-ACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATCCCACCAGACCA 55003
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| ||| | || | ||| ||||| ||| | ||||||| | ||| | || ||||||||
Sbjct 55002 GCAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAA 54943
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
||| || |||||||| || | ||| ||||
Sbjct 54942 CATCCAGAAAGAGTCCACCCTTCATTTGGT 54913
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| ||||| || || || || || ||||| |||||||| | ||| |||| |
Sbjct 54893 ATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATTACATTGGAAGTGGAGAGCTCG 54834
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || || || ||| |||||||| || | || |||||
Sbjct 54833 GACACAATTG-ACAATGTGAAGGCGAAGATTCAGGATAAAGAGGGAATTCCACCAGATCA 54775
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || | |||| ||| || || || | ||||||| | || |||| ||||||||
Sbjct 54774 GCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAA 54715
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
||||||||| ||||| ||| | || ||||
Sbjct 54714 CATTCAAAAGGAGTCAACTCTCCACCTGGT 54685
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
|||||||| ||||| ||||| ||||| || || || || || | ||| ||| |
Sbjct 54665 ATGCAAATCTTTGTGAAAACCCTCACTGGTAAGACAATAACTCTTGAAGTTGAGAGCTCA 54606
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || || |||||| ||||| || || |||| || ||
Sbjct 54605 GACACCATTG-ACAATGTCAAGGCAAAAATCCAAGATAAGGAGGGTATCCCGCCAGACCA 54547
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||||||||| || | |||||| || ||| | ||||||| || | || || |||||
Sbjct 54546 GCAAAGACTCATCTTTGCGGGTAAGCAACTCGAAGATGGGCGTACTCTCGCAGACTATAA 54487
Query 115465 CATTCAAAAAGAGTCTACT 115483
|||||| || ||||| |||
Sbjct 54486 CATTCAGAAGGAGTCCACT 54468
>seq9434
Length=50679
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCC 115342
|||||| |||||||| ||||| || || || |||||||| || | || || |||| |
Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107
Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401
|| ||||| ||| |||| || || |||||| ||||||||||| |||| |||
Sbjct 45106 AG--ACACTATTG-ACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGA 45050
Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461
||||||||||| || | ||| || || ||| | ||||||| || | || || ||
Sbjct 45049 CCAGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTA 44990
Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494
|| || || || |||||||| | ||| ||||
Sbjct 44989 CAATATCCAGAAGGAGTCTACACTTCATCTGGT 44957
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||||||||||||||| || || || || ||||| ||||| | ||| |||| |
Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
||||| ||| |||| || || |||||| ||||| || || |||| || ||
Sbjct 45561 GACACCATTG-ACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCA 45503
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| || | || | ||| || || ||| | ||||||| | || | || ||||||||
Sbjct 45502 GCAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATAA 45443
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494
||| ||||| ||||| || | ||| ||||
Sbjct 45442 CATCCAAAAGGAGTCAACACTTCATTTGGT 45413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423334759215280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |