Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq87 102 7e-17 seq9434 93.3 4e-14 >seq87 Length=177581 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| || |||||||| |||||||| | ||| ||| | Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || ||| || ||| ||||| || || |||| || || Sbjct 55061 GACACAATTG-ACAACGTCAAAGCTAAGATTCAAGATAAGGAGGGAATCCCACCAGACCA 55003 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | ||| ||||| ||| | ||||||| | ||| | || |||||||| Sbjct 55002 GCAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTATAA 54943 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || |||||||| || | ||| |||| Sbjct 54942 CATCCAGAAAGAGTCCACCCTTCATTTGGT 54913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| || || || || || ||||| |||||||| | ||| |||| | Sbjct 54893 ATGCAGATTTTCGTGAAGACCCTGACCGGAAAGACCATTACATTGGAAGTGGAGAGCTCG 54834 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| |||||||| || | || ||||| Sbjct 54833 GACACAATTG-ACAATGTGAAGGCGAAGATTCAGGATAAAGAGGGAATTCCACCAGATCA 54775 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || || || | ||||||| | || |||| |||||||| Sbjct 54774 GCAGAGGTTGATTTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACATTGGCAGATTATAA 54715 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||| ||||| ||| | || |||| Sbjct 54714 CATTCAAAAGGAGTCAACTCTCCACCTGGT 54685 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| ||||| || || || || || | ||| ||| | Sbjct 54665 ATGCAAATCTTTGTGAAAACCCTCACTGGTAAGACAATAACTCTTGAAGTTGAGAGCTCA 54606 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || |||||| ||||| || || |||| || || Sbjct 54605 GACACCATTG-ACAATGTCAAGGCAAAAATCCAAGATAAGGAGGGTATCCCGCCAGACCA 54547 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||| || | |||||| || ||| | ||||||| || | || || ||||| Sbjct 54546 GCAAAGACTCATCTTTGCGGGTAAGCAACTCGAAGATGGGCGTACTCTCGCAGACTATAA 54487 Query 115465 CATTCAAAAAGAGTCTACT 115483 |||||| || ||||| ||| Sbjct 54486 CATTCAGAAGGAGTCCACT 54468 >seq9434 Length=50679 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCC 115342 |||||| |||||||| ||||| || || || |||||||| || | || || |||| | Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || ||||| ||| |||| || || |||||| ||||||||||| |||| ||| Sbjct 45106 AG--ACACTATTG-ACAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGA 45050 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||||||||| || | ||| || || ||| | ||||||| || | || || || Sbjct 45049 CCAGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTA 44990 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || || |||||||| | ||| |||| Sbjct 44989 CAATATCCAGAAGGAGTCTACACTTCATCTGGT 44957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || || || || ||||| ||||| | ||| |||| | Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || |||||| ||||| || || |||| || || Sbjct 45561 GACACCATTG-ACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCA 45503 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | || | ||| || || ||| | ||||||| | || | || |||||||| Sbjct 45502 GCAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATAA 45443 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| ||||| ||||| || | ||| |||| Sbjct 45442 CATCCAAAAGGAGTCAACACTTCATTTGGT 45413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423334759215280