Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48644 141 9e-29 seq45117 141 9e-29 seq184 131 2e-25 seq35801 95.1 1e-14 seq4209 93.3 4e-14 seq1982 93.3 4e-14 seq22012 89.7 5e-13 seq10588 89.7 5e-13 seq9434 89.7 5e-13 seq87 89.7 5e-13 seq1077 82.4 7e-11 >seq48644 Length=2856 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| | || | ||| |||||||||||||||||||| ||| Sbjct 1833 GCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGC 1892 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||||||||| ||||| ||| |||| | ||||||||||||||| || Sbjct 1893 GAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGG 1952 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| ||| || | | || | || |||| || || | Sbjct 1953 GATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAAC 2012 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || |||||||| ||||| || || |||||||| Sbjct 2013 CTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2060 >seq45117 Length=3449 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| ||||| | || | ||| |||||||||||||||||||| ||| Sbjct 2426 GCCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGC 2485 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||||||||| ||||| ||| |||| | ||||||||||||||| || Sbjct 2486 GAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGG 2545 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| ||| || | | || | || |||| || || | Sbjct 2546 GATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAAC 2605 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || |||||||| ||||| || || |||||||| Sbjct 2606 CTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2653 >seq184 Length=120086 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||||| ||||| || || ||||||||| Sbjct 5453 CCACCACGAAGACGAAGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCG 5394 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||||||||||| || ||| |||||| || |||||||| || || Sbjct 5393 AGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGA 5334 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | || | || |||| ||| |||| Sbjct 5333 ATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGACC 5274 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || ||||| || || ||||| |||||||||||||| Sbjct 5273 TCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACGAAAATCTGCAT 5227 >seq35801 Length=5147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||| ||||| |||||||||||||| | Sbjct 356 CCACCACGGAGACGAAGAACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 297 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| || | ||||||||| || || Sbjct 296 AATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGCGGA 237 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || || | | || | Sbjct 236 ATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTCAACC 177 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || | ||| || ||||| |||||||| Sbjct 176 TCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAATATCTGCAT 130 >seq4209 Length=73032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 178/261 (68%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||||| || ||||| || || Sbjct 6 GCCACCACGAAGACGGAGAACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGC 65 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| ||||||||||| || |||| | |||||||||||| || || Sbjct 66 AAGGGTTCTACCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGG 125 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | || | || || | | ||| | Sbjct 126 GATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCAAC 185 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTAT 131246 || | ||| | ||| || ||||| | ||||| || || |||||||| ||| || | Sbjct 186 CTCTAGGGTTATGGTCTTTCCGGTCAATGTTTTCACAAAGATCTGCATCTGTTAATTCAG 245 Query 131247 TCCTTCCTCTTAATAATCTTG 131267 |||| | | | |||||||| Sbjct 246 AACTTCAT-TCATTAATCTTG 265 >seq1982 Length=56187 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| || |||||||| || ||| |||| | |||||||||||||| |||||||| || || Sbjct 32274 GTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTT 32215 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||| | | || | || |||| |||||| | |||| ||| | Sbjct 32214 GTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTAT 32155 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || ||||| ||||| |||||||| Sbjct 32154 CGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 32119 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || || | ||||| ||||| || |||||||| ||| Sbjct 32417 CCACCACGAAGACGAAGCACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCA 32358 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | |||||||||||||| ||| Sbjct 32357 AGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGG 32298 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 32297 ATTCCCTCCTTGTC 32284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| || |||||||| || ||| |||| | |||||||||||||| |||||||| || || Sbjct 21937 GTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTT 21878 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| || || ||| | | || | || |||| ||||| | |||| ||| | Sbjct 21877 GTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTTAT 21818 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || |||| ||||| ||||| |||||||| Sbjct 21817 CGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCAT 21782 >seq22012 Length=9549 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| || ||||| |||||||||||||| | Sbjct 5841 CCACCACGGAGACGAAGAACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCAGCC 5900 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| || | ||||||||| || || Sbjct 5901 AATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGCGGA 5960 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | || || | | || | Sbjct 5961 ATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTCCGAGCTTTCAACC 6020 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || |||| ||| || ||||| |||||||| Sbjct 6021 TCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTGCAT 6067 >seq10588 Length=20159 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| |||| ||| ||||| | ||| | ||| |||||||| || || |||||||| ||| Sbjct 1253 CCACCACGCAGACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCT 1312 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| |||||||| || || |||| | | |||||||||||| || Sbjct 1313 -AGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGG 1371 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||| | | || | || |||| | ||| | Sbjct 1372 AATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAAC 1431 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || || || |||||||| Sbjct 1432 CTCCAAGGTGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 >seq9434 Length=50679 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| || || | || | ||| |||||||| |||||||| ||||| ||| Sbjct 44711 CCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT 44770 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| || ||||| || || |||| | |||||||||||| ||||| Sbjct 44771 -AGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 44829 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||||| ||| | | || | ||||| | | || | Sbjct 44830 AATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCTTTCAAC 44889 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || | || || || || || ||||| Sbjct 44890 CTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| |||| || || || | ||| | || |||||||| || || ||||| || ||| Sbjct 44939 CCACCACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCT 44998 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || | ||| || || || ||||| || || |||| | | |||||||| || || Sbjct 44999 AGTG-TACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGG 45057 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| |||||||| || |||||| ||||| | || | ||| || | ||||| Sbjct 45058 GATACCTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGAC 45117 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || ||||| || ||||||||||| Sbjct 45118 CTCAAGAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165 >seq87 Length=177581 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | ||| ||||| || || ||||| ||||| Sbjct 54895 CCACCACGAAGACGAAGAACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCA 54954 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | || || || |||||||| || |||| || | ||||||||| || ||| Sbjct 54955 AGGGTCCTTCCATCTTCGAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGG 55014 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || || || ||| | | |||| || | || | || || | | ||| | Sbjct 55015 ATTCCCTCCTTATCT-TGAATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAAC 55073 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || || ||||| |||||||||||||| Sbjct 55074 TTCCAACGTAATGGTCTTTCCCGTAAGGGTTTTGACGAAAATCTGCAT 55121 >seq1077 Length=76872 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | ||| | ||| || ||||||||||| |||| |||||| ||| Sbjct 52849 CCACCACGAAGACGGATCACCAGATGAATCGTCGACTCCTTCTGAACGTTGTAGTCGGCG 52790 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||| || || ||||| |||| | |||||||||| | ||| Sbjct 52789 AGCGTACG---GTCTTCAAGCTGTTTTCCAGCGTATATTATCCTCTGCTGGTCCAGTGGG 52733 Query 131128 ATTCCTTCTTTGTC 131141 | ||||| ||||| Sbjct 52732 ACGCCTTCCTTGTC 52719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469725933384960