Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq10588 104 2e-17
seq9434 104 2e-17
seq48644 93.3 3e-14
seq45117 93.3 3e-14
seq87 89.7 4e-13
>seq10588
Length=20159
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| || || || | || || | ||| || ||||||||||| || || ||||| || ||
Sbjct 1252 CCCACCACGCAGACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 1311
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| |||| | | ||||| | || || || ||| | ||||||| ||| |||||| ||
Sbjct 1312 TAGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGG 1371
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| ||||| ||||| || || || |||||| | | | | |||||| | |||
Sbjct 1372 AATACCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTGTCGATGGTGTCGGAGCTCTCA 1429
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||| || ||||| || ||||| |||||||| ||||||||
Sbjct 1430 ACCTCCAAGGTGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479
>seq9434
Length=50679
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || || ||||||||||| ||||| ||||| ||
Sbjct 45167 CCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTGCT 45226
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | || || | || || || ||| |||| | || ||||||||| ||
Sbjct 45227 AATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGA 45286
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| || || ||| | | ||| || | | | | ||||| | |||| |
Sbjct 45287 ATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTCCACT 45346
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| ||||||||||| || |||||||||||||||||
Sbjct 45347 TCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393
>seq48644
Length=2856
Score = 93.3 bits (102), Expect = 3e-14
Identities = 152/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || ||||||||||| |||||||||||||| | ||| |||||
Sbjct 1849 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 1908
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | |||||||| || | || || ||||| |||||| || | ||| || |||||
Sbjct 1909 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 1968
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| ||||| | | | | |||||| | || || | ||| || |
Sbjct 1969 TGGATCTTCGCT--TTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCG 2026
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || ||||| || ||||| ||||| |||||||| ||
Sbjct 2027 TCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063
>seq45117
Length=3449
Score = 93.3 bits (102), Expect = 3e-14
Identities = 152/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || ||||||||||| |||||||||||||| | ||| |||||
Sbjct 2442 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 2501
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | |||||||| || | || || ||||| |||||| || | ||| || |||||
Sbjct 2502 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 2561
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| ||||| | | | | |||||| | || || | ||| || |
Sbjct 2562 TGGATCTTCGCT--TTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCG 2619
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
| || ||||| || ||||| ||||| |||||||| ||
Sbjct 2620 TCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656
>seq87
Length=177581
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || || ||||||||||| ||||| || || |||
Sbjct 54667 CCTCCACGAAGACGAAGGACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCC 54726
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | || || | || || || ||| |||| | || ||| || || ||
Sbjct 54727 AATGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 54786
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||||| || ||| | | |||||| | | | | ||||| | |||| |
Sbjct 54787 ATTCCCTCTTTATCCTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCACT 54846
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || ||||| ||||||||||| || || || |||||||||||
Sbjct 54847 TCCAATGTAATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 54893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 403174444546060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |