Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10588 104 2e-17 seq9434 104 2e-17 seq48644 93.3 3e-14 seq45117 93.3 3e-14 seq87 89.7 4e-13 >seq10588 Length=20159 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || || | ||| || ||||||||||| || || ||||| || || Sbjct 1252 CCCACCACGCAGACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 1311 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | | ||||| | || || || ||| | ||||||| ||| |||||| || Sbjct 1312 TAGGGTTCTTCCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGG 1371 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| || || || |||||| | | | | |||||| | ||| Sbjct 1372 AATACCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTGTCGATGGTGTCGGAGCTCTCA 1429 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || ||||| || ||||| |||||||| |||||||| Sbjct 1430 ACCTCCAAGGTGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 >seq9434 Length=50679 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || ||||||||||| ||||| ||||| || Sbjct 45167 CCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCTGCT 45226 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || || || ||| |||| | || ||||||||| || Sbjct 45227 AATGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGA 45286 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| || || ||| | | ||| || | | | | ||||| | |||| | Sbjct 45287 ATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTCCACT 45346 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct 45347 TCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393 >seq48644 Length=2856 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| |||||||||||||| | ||| ||||| Sbjct 1849 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 1908 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||||| || | || || ||||| |||||| || | ||| || ||||| Sbjct 1909 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 1968 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | |||||| | || || | ||| || | Sbjct 1969 TGGATCTTCGCT--TTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCG 2026 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || ||||| ||||| |||||||| || Sbjct 2027 TCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| |||||||||||||| | ||| ||||| Sbjct 2442 AGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCC 2501 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||||| || | || || ||||| |||||| || | ||| || ||||| Sbjct 2502 TCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 2561 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | | |||||| | || || | ||| || | Sbjct 2562 TGGATCTTCGCT--TTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCG 2619 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || ||||| ||||| |||||||| || Sbjct 2620 TCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 >seq87 Length=177581 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || ||||||||||| ||||| || || ||| Sbjct 54667 CCTCCACGAAGACGAAGGACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCC 54726 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || || || ||| |||| | || ||| || || || Sbjct 54727 AATGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGGA 54786 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||| || ||| | | |||||| | | | | ||||| | |||| | Sbjct 54787 ATTCCCTCTTTATCCTGAATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCACT 54846 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| ||||||||||| || || || ||||||||||| Sbjct 54847 TCCAATGTAATGGTCTTTCCGGTCAGGGTCTTCACGAAAATCTGCAT 54893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403174444546060