Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4587 123 2e-23 seq4690 118 7e-22 seq14733 116 2e-21 seq9776 113 3e-20 seq30953 109 4e-19 seq21980 109 4e-19 seq3167 109 4e-19 seq9434 105 4e-18 seq19484 104 2e-17 seq44798 102 5e-17 seq5014 98.7 7e-16 seq11701 95.1 8e-15 seq48644 91.5 1e-13 seq45117 91.5 1e-13 seq10588 91.5 1e-13 seq184 89.7 3e-13 seq22161 84.2 1e-11 seq87 84.2 1e-11 >seq4587 Length=35126 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||| | ||||||||| |||| || |||||||| Sbjct 20125 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGACAGGGACAGTGGGAATCTCGT 20184 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 20185 TAATCCATTCATGCGCGTCACTAATTAGATGAC 20217 >seq4690 Length=34748 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||| | ||||||||| |||| || |||||||| Sbjct 20052 AAGCCCATTCCCTTGGCTGTGGTTTCGTTGGATAGTAGACAGGGACAGTGGGAATCTCGT 20111 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||| |||| Sbjct 20112 TAATCCATTCATGCGCGTCACTAATTAGATAACGA 20146 >seq14733 Length=15219 Score = 116 bits (128), Expect = 2e-21 Identities = 84/96 (88%), Gaps = 7/96 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT------AGGGGGTAATCTCG 25955 ||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| Sbjct 7313 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACGACGACAGTGGG-AATCTCG 7371 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| ||||||||||||||||| |||||||||| Sbjct 7372 TTAATCCATTCATGCGCGTCACTAACTAGATGACGA 7407 >seq9776 Length=21406 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| ||| |||||||||||||||||| | || || |||||||| Sbjct 3696 AAGCCCGTTCCCTTGATTGTTGTTTCGCTAGATAGTAGACAAGGACAGTGGGAATCTCGT 3637 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| ||||||||||||||| Sbjct 3636 TAATCCATTCATGCGCGTCTCTAATTAGATGACGA 3602 >seq30953 Length=6547 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||| | ||||||||| | || || |||||||| Sbjct 3378 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGACAAGGACAGTGGGAATCTCGT 3319 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| | ||||||||||||||||||| Sbjct 3318 TAATCCATTCATACATGTCACTAATTAGATGACGA 3284 >seq21980 Length=9569 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||| ||||||||| | || || |||||||| Sbjct 5925 AAGCCCGTTCCCTTGGCTGTCATTTCGCTGGATAGTAGACATGGACAATGGGAATCTCGT 5984 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| ||||||||||||||| || Sbjct 5985 TAATCCATTCATGCGCATCACTAATTAGATGATGA 6019 >seq3167 Length=41999 Score = 109 bits (120), Expect = 4e-19 Identities = 82/95 (86%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| || |||||||||||||||||| |||| || |||||||| Sbjct 4492 AAGCCCGTTCCCTTGGCCGTTGTTTCGCTAGATAGTAGACAGGGACAGTGGGAATCTCGT 4551 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | ||||||||||| ||||||||| |||||| Sbjct 4552 TAATACATTCATGCGCGT-ACTAATTAGGTGACGA 4585 >seq9434 Length=50679 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | ||| | |||||| || || ||| ||| || |||||||||||||||| Sbjct 45849 TACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAG 45908 Query 38149 ACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | || | || |||| ||| ||||||||||| || || | |||||| || | | Sbjct 45909 -CAAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGG 45967 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | || || ||||| || || || || || | | || || |||||| Sbjct 45968 GGAATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCA 46027 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || || | |||||||||||| |||||||| Sbjct 46028 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 >seq19484 Length=11097 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||||||||| ||| |||||||||||||||||| | || || ||||| || Sbjct 7140 AAACCCGTTCCCTTGATTGTTGTTTCGCTAGATAGTAGACAAGGACAGTGGGAATCTTGT 7199 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| ||||||||||||||| Sbjct 7200 TAATCCATTCATGCGCGTCTCTAATTAGATGACGA 7234 >seq44798 Length=3480 Score = 102 bits (112), Expect = 5e-17 Identities = 71/81 (88%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1004 AAGCCCGTTGCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1063 Query 25957 TAATCCTTTCATGCGCGTCAC 25977 |||||| |||||||||||||| Sbjct 1064 TAATCCATTCATGCGCGTCAC 1084 >seq5014 Length=50481 Score = 98.7 bits (108), Expect = 7e-16 Identities = 79/95 (83%), Gaps = 9/95 (9%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||| |||||||||||| | ||||||| |||| || |||||||| Sbjct 20149 AAGCCCATTCCCTTGGTTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 20208 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||||||||||| |||||||||| Sbjct 20209 TAATC----CATGCGCGTCACTAACTAGATGACGA 20239 >seq11701 Length=18544 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| ||| |||| ||| |||||| || |||| || |||||||| Sbjct 11155 AAGCCCGTTCCCTTGGTTGTAGTTTTGCTGGATAGTCGACAGGGACAGTGGGAATCTCGT 11214 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| | ||||||||| || ||||||||||||||| Sbjct 11215 TAACTCATTCATGCGCATCGCTAATTAGATGACGA 11249 Score = 93.3 bits (102), Expect = 3e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || |||||| ||||||||||| |||| ||||||||| |||||||||||||||||||||| Sbjct 13109 TTACTCTCTTTTCAAAGTTCTCTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCT 13168 Query 20004 CGCGGTAATATTTAGCCTT 20022 | || ||||||||||| Sbjct 13169 CTCGCCCGTATTTAGCCTT 13187 >seq48644 Length=2856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| || || || |||||||||||| ||||| || | Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| |||| ||||| ||||| || || || || || || || | ||| Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || |||||||| | || || || | |||||| Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || || || || | |||||||| || |||||||| || Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| || || || |||||||||||| ||||| || | Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| |||| ||||| ||||| || || || || || || || | ||| Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || |||||||| | || || || | |||||| Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || || || || | |||||||| || |||||||| || Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 >seq10588 Length=20159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||| |||||||||||||||| | | ||| | || || | || Sbjct 1049 TGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGC 1108 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| || | || ||||| || | || | ||||| |||||| || || Sbjct 1109 TTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTA 1168 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||| | | |||||| || ||||| || || || || || || || ||| Sbjct 1169 GCCTTCACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 1228 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 || || || || || |||||||| Sbjct 1229 AATGTCTTAACAAAGATCTGCAT 1251 >seq184 Length=120086 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||||| || || || ||||| || ||||||||||| | Sbjct 5454 ACCACCACGAAGACGAAGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGC 5395 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || |||| || || ||||| || ||||| ||||| || || | || Sbjct 5394 GAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGG 5335 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| || ||| ||||||||| | || || || ||| || Sbjct 5334 AATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGAC 5275 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || || |||||||||| |||||| ||||| |||||||| ||| Sbjct 5274 CTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACGAAAATCTGCATCTTT 5223 >seq22161 Length=9464 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||| | Sbjct 3635 CTCTCT-TTCAAAGTCCTTTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCTGTC 3693 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3694 GCCCGTATTTAGCCTT 3709 >seq87 Length=177581 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || ||||| |||||||||||| || ||||| | ||| | | | || || Sbjct 54685 ACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCCAATGTCCTTCCATCTTCA 54744 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || | | || ||||| | || | || ||||| ||| | Sbjct 54745 AGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGA 54804 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||||||| | | || || || || ||||| |||||||| || || Sbjct 54805 ATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCACTTCCAATGTAATGGTCTTT 54864 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| ||| |||||||| |||||||| Sbjct 54865 CCGGTCAGGGTCTTCACGAAAATCTGCAT 54893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333364975788614