Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4587 123 2e-23
seq4690 118 7e-22
seq14733 116 2e-21
seq9776 113 3e-20
seq30953 109 4e-19
seq21980 109 4e-19
seq3167 109 4e-19
seq9434 105 4e-18
seq19484 104 2e-17
seq44798 102 5e-17
seq5014 98.7 7e-16
seq11701 95.1 8e-15
seq48644 91.5 1e-13
seq45117 91.5 1e-13
seq10588 91.5 1e-13
seq184 89.7 3e-13
seq22161 84.2 1e-11
seq87 84.2 1e-11
>seq4587
Length=35126
Score = 123 bits (136), Expect = 2e-23
Identities = 83/93 (89%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||| | ||||||||| |||| || ||||||||
Sbjct 20125 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGACAGGGACAGTGGGAATCTCGT 20184
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||||| ||||||||||||||||||||||||||
Sbjct 20185 TAATCCATTCATGCGCGTCACTAATTAGATGAC 20217
>seq4690
Length=34748
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||||| | ||||||||| |||| || ||||||||
Sbjct 20052 AAGCCCATTCCCTTGGCTGTGGTTTCGTTGGATAGTAGACAGGGACAGTGGGAATCTCGT 20111
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||| ||||
Sbjct 20112 TAATCCATTCATGCGCGTCACTAATTAGATAACGA 20146
>seq14733
Length=15219
Score = 116 bits (128), Expect = 2e-21
Identities = 84/96 (88%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT------AGGGGGTAATCTCG 25955
||||||||||||||||||||||||||||| ||||||||| || ||| |||||||
Sbjct 7313 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACGACGACAGTGGG-AATCTCG 7371
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||||| ||||||||||||||||| ||||||||||
Sbjct 7372 TTAATCCATTCATGCGCGTCACTAACTAGATGACGA 7407
>seq9776
Length=21406
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||| ||| |||||||||||||||||| | || || ||||||||
Sbjct 3696 AAGCCCGTTCCCTTGATTGTTGTTTCGCTAGATAGTAGACAAGGACAGTGGGAATCTCGT 3637
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||| |||||||||||||||
Sbjct 3636 TAATCCATTCATGCGCGTCTCTAATTAGATGACGA 3602
>seq30953
Length=6547
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||| | ||||||||| | || || ||||||||
Sbjct 3378 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGACAAGGACAGTGGGAATCTCGT 3319
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||| | |||||||||||||||||||
Sbjct 3318 TAATCCATTCATACATGTCACTAATTAGATGACGA 3284
>seq21980
Length=9569
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||| ||||||| ||||||||| | || || ||||||||
Sbjct 5925 AAGCCCGTTCCCTTGGCTGTCATTTCGCTGGATAGTAGACATGGACAATGGGAATCTCGT 5984
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||| ||||||||||||||| ||
Sbjct 5985 TAATCCATTCATGCGCATCACTAATTAGATGATGA 6019
>seq3167
Length=41999
Score = 109 bits (120), Expect = 4e-19
Identities = 82/95 (86%), Gaps = 6/95 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| || |||||||||||||||||| |||| || ||||||||
Sbjct 4492 AAGCCCGTTCCCTTGGCCGTTGTTTCGCTAGATAGTAGACAGGGACAGTGGGAATCTCGT 4551
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| | ||||||||||| ||||||||| ||||||
Sbjct 4552 TAATACATTCATGCGCGT-ACTAATTAGGTGACGA 4585
>seq9434
Length=50679
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| | ||| | |||||| || || ||| ||| || ||||||||||||||||
Sbjct 45849 TACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAG 45908
Query 38149 ACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
||| | || | || |||| ||| ||||||||||| || || | |||||| || | |
Sbjct 45909 -CAAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGG 45967
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|| | || || ||||| || || || || || | | || || ||||||
Sbjct 45968 GGAATTCCCTCCTTGTCTTGGATCTTAGCTTTTACGTTGTCAATTGTGTCAGAGCTTTCA 46027
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || | || || || || || || | |||||||||||| ||||||||
Sbjct 46028 ACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077
>seq19484
Length=11097
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|| |||||||||||| ||| |||||||||||||||||| | || || ||||| ||
Sbjct 7140 AAACCCGTTCCCTTGATTGTTGTTTCGCTAGATAGTAGACAAGGACAGTGGGAATCTTGT 7199
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||| |||||||||||||||
Sbjct 7200 TAATCCATTCATGCGCGTCTCTAATTAGATGACGA 7234
>seq44798
Length=3480
Score = 102 bits (112), Expect = 5e-17
Identities = 71/81 (88%), Gaps = 5/81 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||| ||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 1004 AAGCCCGTTGCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1063
Query 25957 TAATCCTTTCATGCGCGTCAC 25977
|||||| ||||||||||||||
Sbjct 1064 TAATCCATTCATGCGCGTCAC 1084
>seq5014
Length=50481
Score = 98.7 bits (108), Expect = 7e-16
Identities = 79/95 (83%), Gaps = 9/95 (9%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||| |||||||||||| | ||||||| |||| || ||||||||
Sbjct 20149 AAGCCCATTCCCTTGGTTGTGGTTTCGCTGGTTAGTAGACAGGGACAGTGGGAATCTCGT 20208
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||||| ||||||||||||||| ||||||||||
Sbjct 20209 TAATC----CATGCGCGTCACTAACTAGATGACGA 20239
>seq11701
Length=18544
Score = 95.1 bits (104), Expect = 8e-15
Identities = 78/95 (82%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||| ||| |||| ||| |||||| || |||| || ||||||||
Sbjct 11155 AAGCCCGTTCCCTTGGTTGTAGTTTTGCTGGATAGTCGACAGGGACAGTGGGAATCTCGT 11214
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||| | ||||||||| || |||||||||||||||
Sbjct 11215 TAACTCATTCATGCGCATCGCTAATTAGATGACGA 11249
Score = 93.3 bits (102), Expect = 3e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003
|| |||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 13109 TTACTCTCTTTTCAAAGTTCTCTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCT 13168
Query 20004 CGCGGTAATATTTAGCCTT 20022
| || |||||||||||
Sbjct 13169 CTCGCCCGTATTTAGCCTT 13187
>seq48644
Length=2856
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||| || || || |||||||||||| ||||| || |
Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| |||| ||||| ||||| || || || || || || || | |||
Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| || || |||||||| | || || || | ||||||
Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|||| || || || || || || | |||||||| || |||||||| ||
Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063
>seq45117
Length=3449
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||| || || || |||||||||||| ||||| || |
Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| |||| ||||| ||||| || || || || || || || | |||
Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| || || |||||||| | || || || | ||||||
Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|||| || || || || || || | |||||||| || |||||||| ||
Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656
>seq10588
Length=20159
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
||||| || |||||| |||||||||||||||| | | ||| | || || | ||
Sbjct 1049 TGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGC 1108
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
||||| ||||| || | || ||||| || | || | ||||| |||||| || ||
Sbjct 1109 TTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTA 1168
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | |||||| || ||||| || || || || || || || |||
Sbjct 1169 GCCTTCACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 1228
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
|| || || || || ||||||||
Sbjct 1229 AATGTCTTAACAAAGATCTGCAT 1251
>seq184
Length=120086
Score = 89.7 bits (98), Expect = 3e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | ||| | ||||| || || || ||||| || ||||||||||| |
Sbjct 5454 ACCACCACGAAGACGAAGCACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGC 5395
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| || | || |||| || || ||||| || ||||| ||||| || || | ||
Sbjct 5394 GAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGG 5335
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| |||||| || ||| ||||||||| | || || || ||| ||
Sbjct 5334 AATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGAC 5275
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|| | || || || |||||||||| |||||| ||||| |||||||| |||
Sbjct 5274 CTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACGAAAATCTGCATCTTT 5223
>seq22161
Length=9464
Score = 84.2 bits (92), Expect = 1e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 3635 CTCTCT-TTCAAAGTCCTTTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCTGTC 3693
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 3694 GCCCGTATTTAGCCTT 3709
>seq87
Length=177581
Score = 84.2 bits (92), Expect = 1e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| || ||||| |||||||||||| || ||||| | ||| | | | || ||
Sbjct 54685 ACCAGGTGGAGAGTTGACTCCTTTTGAATGTTATAATCTGCCAATGTCCTTCCATCTTCA 54744
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| || || || ||||| || | | || ||||| | || | || ||||| ||| |
Sbjct 54745 AGCTGCTTCCCTGCAAAAATCAACCTCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGA 54804
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| || ||||||||| | | || || || || ||||| |||||||| || ||
Sbjct 54805 ATCTTCGCCTTCACATTGTCAATTGTGTCCGAGCTCTCCACTTCCAATGTAATGGTCTTT 54864
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| |||| ||| |||||||| ||||||||
Sbjct 54865 CCGGTCAGGGTCTTCACGAAAATCTGCAT 54893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333364975788614
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