Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4197 116 5e-21 >seq4197 Length=36674 Score = 116 bits (128), Expect = 5e-21 Identities = 398/613 (65%), Gaps = 13/613 (2%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| |||||||||||||| | || ||||| | || || ||||| || || || || Sbjct 23419 ACAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAG 23478 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 ||| ||||| || || |||||||| ||||||||||| | |||| || |||||| |||| Sbjct 23479 TCCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGA 23537 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC---ATAACCGGCGCTGTCAT 32835 | || ||||| || ||||| |||| | | ||| | | | ||| ||| Sbjct 23538 AGATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA- 23596 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | ||||| ||||| ||||| | ||| || | || || || || | Sbjct 23597 --ATCCAGCGGAGCGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654 Query 32896 TAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGACTATAC 32954 ||||| || || || || | ||| || || || | | ||| || ||| Sbjct 23655 GGAAGAGCCGGTGCTTCTC-GGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTAC 23713 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 ||||| || || || || || || || || || || ||||||||| | |||||||| | Sbjct 23714 ATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAA 23773 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 | ||| | || | || | | || | ||| || ||| || ||||| |||| Sbjct 23774 ACCTGGATCTCCTTCATGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCT 23833 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTC 33131 || || || || | ||||| ||||| | || || || | ||||| || | | Sbjct 23834 GCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCC 23893 Query 33132 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33191 |||| | || ||||| || | || || || || | ||||| || || || || ||| Sbjct 23894 CAATGACGGAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCC 23953 Query 33192 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 || |||||||| | ||| ||| | |||| | || || || ||| |||| || ||| Sbjct 23954 TTCTTATACATCTCCCATATGCGAGGATACTTGATCGGGAACATACAGAATCGATCCGGA 24013 Query 33252 TTTTTTGCAAGGA 33264 || ||||||| Sbjct 24014 TTGGAGGCAAGGA 24026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630562100482400