Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq87 129 5e-25 seq9434 125 6e-24 seq184 113 4e-20 seq10588 109 5e-19 seq35801 98.7 9e-16 seq48644 96.9 3e-15 seq45117 96.9 3e-15 >seq87 Length=177581 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | ||||| ||||||| ||| || Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || || ||||| ||||| ||||| ||||||||| Sbjct 55517 GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAA 55458 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || ||||| ||||||| |||||| | | ||||| ||| Sbjct 55457 CAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAAT 55398 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || |||||||| || || || ||||| | || || || |||| Sbjct 55397 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGGAA 55349 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || || | || || | ||||| ||| || Sbjct 55350 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACTATTACTCTTGAAGTTGAGAGCTC 55291 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| || || |||| |||| || | ||| || || || || ||||| || | Sbjct 55290 TGACACCATTGACAACGTCA---AAGCTAAGATTCA-AGATAAGGAGGGAATTCCTCCAG 55235 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||| | | || ||||| ||||| ||| | ||||||| | || | | |||| Sbjct 55234 ACCAGCAGAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATT 55175 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || |||||||| || || ||||| ||||| Sbjct 55174 ATAACATCCAGAAAGAATCAACCCTGCATTTGGTGCT 55138 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || |||| || | ||||| ||| ||| Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | ||| || || || || || ||||| || Sbjct 55061 GACACAATTGACAACGTCA---AAGCTAAGATTCAA-GATAAGGAGGGAATCCCACCAGA 55006 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || ||||||||||| ||| | ||||||| | || | | ||||| Sbjct 55005 CCAGCAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTA 54946 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || ||||| || || Sbjct 54945 TAACATCCAGAAAGAGTCCACCCTTCATTTGGTTCT 54910 >seq9434 Length=50679 Score = 125 bits (138), Expect = 6e-24 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||| || ||| ||||||| | || || || ||| Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || ||||| || || | || |||| ||| ||||| ||||||||||| |||||| Sbjct 44877 GATACAATCGA--CAATGTTAAGGCTAAAATTCAG-GACAAGGAAGGGATTCCTCCTGAC 44821 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| || || ||| | || |||| |||||| | | ||||| Sbjct 44820 CAGCAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTAT 44761 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || ||||| || || Sbjct 44760 AACATTCAGAAGGAGTCCACCCTTCA 44735 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| ||||| |||||||| | || || || | |||||| | ||||| ||| || Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| || | ||| ||||| || || ||||| || || Sbjct 45789 GACACAATTGA--CAATGTCAAAGCTAAGATTCAA-GACAAGGAGGGAATTCCCCCAGAT 45733 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||||||||| ||| | ||||||| | || | | ||||| Sbjct 45732 CAGCAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTAT 45673 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || || || ||||| Sbjct 45672 AACATCCAGAAGGAATCCACCCTCCACTTGGTGCT 45638 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| || ||| |||| || | || || ||| || Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| ||||||| || |||||||| || ||||||||| Sbjct 45106 AGACACTATTGA--CAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGAC 45049 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | || |||||||| || ||| | ||||||| || || | | || ||| Sbjct 45048 CAGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTAC 44989 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || ||| | || || Sbjct 44988 AATATCCAGAAGGAGTCTACACTTCATCTGGTCCT 44954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || | ||||| |||| || || ||| Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || | |||| || | || ||||| || || ||||| |||||| Sbjct 46017 GACACAATTGA--CAACGTAAAAGCTAAGATCCAA-GACAAGGAGGGAATTCCCCCTGAC 45961 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | |||| |||||||| || ||| |||| |||| | || | | |||||| Sbjct 45960 CAACAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTAC 45901 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| ||||| || || || ||||| | || ||||| || Sbjct 45900 AATATTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCAGAGGTGG 45851 >seq184 Length=120086 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || || || || || |||| ||||| | || || |||| || | Sbjct 5219 ACGCAAAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCG 5278 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | || || ||||| ||||| ||||| ||| ||| ||||| ||||| ||||||| Sbjct 5279 AATCCTCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCAC 5338 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | ||||| || ||| | || || ||||| || || |||| |||| || || | | || Sbjct 5339 CAGACCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCG 5398 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||| || || ||||| ||||| || | ||||| Sbjct 5399 ATTACAATATCCAGAAGGAATCGACGCTCCACCTGGTGCT 5438 >seq10588 Length=20159 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||| ||| Sbjct 1251 ATGCAGATCTTTGTTAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTCT 1192 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || ||||| || ||| ||||| ||||||||||| || |||||| Sbjct 1191 GATACTATTGATAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCAGACCAA 1132 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| || ||| | | ||||||||| Sbjct 1131 CAGCGTTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACTCTTGCTGATTACAAT 1072 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 1071 ATTCAGAAGGAGTCTACCCTTCA 1049 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | ||||| | || || ||| || Sbjct 1479 ATGCAGATCTTTGTCAAGACGCTCACTGGAAAGACTATCACCTTGGAGGTTGAGAGCTCC 1420 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 1419 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 1360 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||| || || || | || |||| | || | | ||||||||| Sbjct 1359 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGAAGAACCCTAGCTGATTACAAT 1300 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | ||||| Sbjct 1299 ATCCAGAAGGAGTCCACCCTTCATCTTGTGCT 1268 >seq35801 Length=5147 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || ||||||||||| || || ||||||| |||| || || || Sbjct 129 AATGCAGATATTCGTCAAGACTTTGACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTC 188 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| | || || | ||| ||||| || |||||||| || | Sbjct 189 GGACACCATAGATAATGTCA---AGGCGAAGATTCA-GGACAAGGAGGGGATTCCGCCAG 244 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||| || | || ||||| || || || | || |||| || || ||| |||| Sbjct 245 ACCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGGACATTGGCTGATT 304 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 |||| ||||| || ||||| || || || Sbjct 305 ACAACATTCAGAAGGAATCGACCCTTCA 332 >seq48644 Length=2856 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| || | || || | || || || || || Sbjct 2060 ATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCTTCC 2001 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| ||||| || ||||| ||| Sbjct 2000 GACACCATCGA--CAATGTGAAAGCGAAGATCCAG-GACAAGGAAGGCATCCCACCGGAC 1944 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||||||||| |||| || | ||| || | | ||| ||| Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || || || | ||||| Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 1849 >seq45117 Length=3449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| || | || || | || || || || || Sbjct 2653 ATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCTTCC 2594 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| ||||| || ||||| ||| Sbjct 2593 GACACCATCGA--CAATGTGAAAGCGAAGATCCAG-GACAAGGAAGGCATCCCACCGGAC 2537 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||||||||| |||| || | ||| || | | ||| ||| Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || || || | ||||| Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 2442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431281044381110