Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq87 129 5e-25
seq9434 125 6e-24
seq184 113 4e-20
seq10588 109 5e-19
seq35801 98.7 9e-16
seq48644 96.9 3e-15
seq45117 96.9 3e-15
>seq87
Length=177581
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || || | ||||| ||||||| ||| ||
Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| || || ||||| ||||| ||||| |||||||||
Sbjct 55517 GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAA 55458
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||| || ||||| ||||||| |||||| | | ||||| |||
Sbjct 55457 CAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAAT 55398
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || |||||||| || || || ||||| | || || || ||||
Sbjct 55397 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGGAA 55349
Score = 102 bits (112), Expect = 7e-17
Identities = 154/217 (71%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||||||||| || || | || || | ||||| ||| ||
Sbjct 55350 AATGCAGATCTTTGTGAAGACTTTGACTGGCAAGACTATTACTCTTGAAGTTGAGAGCTC 55291
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|||||| || || |||| |||| || | ||| || || || || ||||| || |
Sbjct 55290 TGACACCATTGACAACGTCA---AAGCTAAGATTCA-AGATAAGGAGGGAATTCCTCCAG 55235
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
|||| ||| | | || ||||| ||||| ||| | ||||||| | || | | ||||
Sbjct 55234 ACCAGCAGAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATT 55175
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || |||||||| || || ||||| |||||
Sbjct 55174 ATAACATCCAGAAAGAATCAACCCTGCATTTGGTGCT 55138
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/216 (69%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || || |||| || | ||||| ||| |||
Sbjct 55121 ATGCAGATTTTCGTCAAAACCCTTACGGGAAAGACCATTACGTTGGAAGTTGAGAGCTCT 55062
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| |||| || | ||| || || || || || ||||| ||
Sbjct 55061 GACACAATTGACAACGTCA---AAGCTAAGATTCAA-GATAAGGAGGGAATCCCACCAGA 55006
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||| | | || ||||||||||| ||| | ||||||| | || | | |||||
Sbjct 55005 CCAGCAGAGATTGATCTTTGCCGGCAAGCAACTCGAAGATGGAAGGACCCTTGCTGATTA 54946
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| ||||| || ||||| || ||
Sbjct 54945 TAACATCCAGAAAGAGTCCACCCTTCATTTGGTTCT 54910
>seq9434
Length=50679
Score = 125 bits (138), Expect = 6e-24
Identities = 153/206 (74%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||||||||| ||||| ||||| || ||| ||||||| | || || || |||
Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || ||||| || || | || |||| ||| ||||| ||||||||||| ||||||
Sbjct 44877 GATACAATCGA--CAATGTTAAGGCTAAAATTCAG-GACAAGGAAGGGATTCCTCCTGAC 44821
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || ||||| || || ||| | || |||| |||||| | | |||||
Sbjct 44820 CAGCAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTAT 44761
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
|| ||||| || || ||||| || ||
Sbjct 44760 AACATTCAGAAGGAGTCCACCCTTCA 44735
Score = 100 bits (110), Expect = 2e-16
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| ||||| |||||||| | || || || | |||||| | ||||| ||| ||
Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || |||| || | ||| ||||| || || ||||| || ||
Sbjct 45789 GACACAATTGA--CAATGTCAAAGCTAAGATTCAA-GACAAGGAGGGAATTCCCCCAGAT 45733
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| || | || ||||||||||| ||| | ||||||| | || | | |||||
Sbjct 45732 CAGCAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTAT 45673
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || |||||||| || || || |||||
Sbjct 45672 AACATCCAGAAGGAATCCACCCTCCACTTGGTGCT 45638
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| || || |||| || ||| |||| || | || || ||| ||
Sbjct 45166 AATGCAGATTTTTGTTAAAACCCTGACTGGGAAAACCATAACTCTTGAGGTCGAGAGTTC 45107
Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| || || || ||| ||||||| || |||||||| || |||||||||
Sbjct 45106 AGACACTATTGA--CAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATCCCACCTGAC 45049
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || | | || |||||||| || ||| | ||||||| || || | | || |||
Sbjct 45048 CAGCAAAGACTCATCTTTGCCGGGAAGCAACTCGAAGATGGGCGTACACTAGCTGACTAC 44989
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || ||| | || ||
Sbjct 44988 AATATCCAGAAGGAGTCTACACTTCATCTGGTCCT 44954
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || || | ||||| |||| || || |||
Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || | |||| || | || ||||| || || ||||| ||||||
Sbjct 46017 GACACAATTGA--CAACGTAAAAGCTAAGATCCAA-GACAAGGAGGGAATTCCCCCTGAC 45961
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| | |||| |||||||| || ||| |||| |||| | || | | ||||||
Sbjct 45960 CAACAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTAC 45901
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| ||||| ||||| || || || ||||| | || ||||| ||
Sbjct 45900 AATATTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCAGAGGTGG 45851
>seq184
Length=120086
Score = 113 bits (124), Expect = 4e-20
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050
||| || ||||| || || || || || |||| ||||| | || || |||| || |
Sbjct 5219 ACGCAAAGATGCAGATTTTCGTCAAAACCCTGACGGGTAAGACGATAACCCTCGAGGTCG 5278
Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110
| || || ||||| ||||| ||||| ||| ||| ||||| ||||| |||||||
Sbjct 5279 AATCCTCCGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCAC 5338
Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170
| ||||| || ||| | || || ||||| || || |||| |||| || || | | ||
Sbjct 5339 CAGACCAGCAACGGCTAATCTTCGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTCGCCG 5398
Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||||| || || ||||| ||||| || | |||||
Sbjct 5399 ATTACAATATCCAGAAGGAATCGACGCTCCACCTGGTGCT 5438
>seq10588
Length=20159
Score = 109 bits (120), Expect = 5e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| || || ||||||| | || || ||| |||
Sbjct 1251 ATGCAGATCTTTGTTAAGACATTGACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTCT 1192
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| ||||| || ||||| || ||| ||||| ||||||||||| || ||||||
Sbjct 1191 GATACTATTGATAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATTCCTCCAGACCAA 1132
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||| || || || | || |||| || ||| | | |||||||||
Sbjct 1131 CAGCGTTTGATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACTCTTGCTGATTACAAT 1072
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
||||| || || || || || ||
Sbjct 1071 ATTCAGAAGGAGTCTACCCTTCA 1049
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || | ||||| | || || ||| ||
Sbjct 1479 ATGCAGATCTTTGTCAAGACGCTCACTGGAAAGACTATCACCTTGGAGGTTGAGAGCTCC 1420
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || ||| ||||| || || ||||| || |||||
Sbjct 1419 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 1360
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || |||| ||||| || || || | || |||| | || | | |||||||||
Sbjct 1359 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGAAGAACCCTAGCTGATTACAAT 1300
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || ||| | |||||
Sbjct 1299 ATCCAGAAGGAGTCCACCCTTCATCTTGTGCT 1268
>seq35801
Length=5147
Score = 98.7 bits (108), Expect = 9e-16
Identities = 148/208 (71%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| ||||| || ||||||||||| || || ||||||| |||| || || ||
Sbjct 129 AATGCAGATATTCGTCAAGACTTTGACAGGGAAGACCATCACCCTCGAGGTTGAAAGCTC 188
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||||| || || |||| | || || | ||| ||||| || |||||||| || |
Sbjct 189 GGACACCATAGATAATGTCA---AGGCGAAGATTCA-GGACAAGGAGGGGATTCCGCCAG 244
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
|||| ||| || | || ||||| || || || | || |||| || || ||| ||||
Sbjct 245 ACCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGGACATTGGCTGATT 304
Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201
|||| ||||| || ||||| || || ||
Sbjct 305 ACAACATTCAGAAGGAATCGACCCTTCA 332
>seq48644
Length=2856
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| || | || || | || || || || ||
Sbjct 2060 ATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCTTCC 2001
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || |||| || | || ||||| ||||| || ||||| |||
Sbjct 2000 GACACCATCGA--CAATGTGAAAGCGAAGATCCAG-GACAAGGAAGGCATCCCACCGGAC 1944
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || ||||||||||| |||| || | ||| || | | ||| |||
Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||| || || || || || | |||||
Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 1849
>seq45117
Length=3449
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| || | || || | || || || || ||
Sbjct 2653 ATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCTTCC 2594
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| || || |||| || | || ||||| ||||| || ||||| |||
Sbjct 2593 GACACCATCGA--CAATGTGAAAGCGAAGATCCAG-GACAAGGAAGGCATCCCACCGGAC 2537
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || ||||||||||| |||| || | ||| || | | ||| |||
Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||| || || || || || | |||||
Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCT 2442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431281044381110
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