Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq5412 322 5e-83 seq8546 241 1e-58 seq29420 156 5e-33 seq59 143 3e-29 seq25216 141 1e-28 seq3927 127 2e-24 seq8630 105 8e-18 seq4835 89.7 6e-13 >seq5412 Length=31808 Score = 322 bits (356), Expect = 5e-83 Identities = 488/692 (71%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 166100 GGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCT 166158 |||||||| |||||||||| || | ||| | ||||| ||| || || || | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 166159 TTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTA 166218 ||| | || || ||||| || ||||| ||||| || ||||| || || || ||||| Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 166219 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTT 166278 | || || ||||| || ||||||||||| || | | | | || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 166279 CACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCT 166338 ||||| ||||| || |||||||| ||||| ||||||||||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 166339 TTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGG 166398 | |||| | || || |||||| | | || | | |||||||||||||| ||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 166399 GAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTT 166458 ||| | || ||| || |||||||| ||||||||| || || || || || |||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 166459 GCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 166518 || | || | || || ||| || |||| || | ||| |||| || ||| | | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 166519 ATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 166578 ||||| || || || ||| || ||||||| |||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 166579 ATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTC 166638 ||||| |||||||| || || ||| | || ||||| |||||||||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 166639 TCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAG 166698 | ||| || | | || || || | || | || ||||| |||| ||| Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 166699 TCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCT 166758 ||| || | ||||||| | |||||||||| |||||||| || || ||||| |||||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 166759 CATGGTTACTTCGGTCGCCTGATCTTCCAATA 166790 |||||||| || || || | ||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 166904 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATG 166963 |||| |||||||| || | | ||| |||| |||||||| | || |||||||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 166964 TCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 167023 | | ||||| || || ||||||||||| ||||| || |||||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 167024 CTCTGGATCTTGCTGC 167039 |||| || || || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 241 bits (266), Expect = 1e-58 Identities = 322/445 (72%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 166597 CATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGT 166656 || ||| | || ||||| ||||||||||| || || | ||| | ||||| || | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 166657 CTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTA 166715 | || || || | | | | || | || ||||| |||| | | || || | ||||| Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086 Query 166716 CAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCG 166775 || ||||||||||| || || || | || || || |||||||||||||| || || || Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026 Query 166776 CCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGC 166835 | ||||||||||| ||| |||||| | |||| || | || |||||| | | || Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966 Query 166836 ATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 166895 |||||||| || ||||| ||||||||| || | ||| |||| || |||||||| | ||| Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906 Query 166896 CAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTG 166955 ||||| ||||| |||||||| || | | ||| |||| |||||||| || ||| Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850 Query 166956 GGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCA 167015 ||| ||| | | ||||| ||| || ||||||||||| ||||| || ||||||||||| Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 167016 CAACTTCCCTCTGGATCTTGCTGCT 167040 ||||||| ||| || || |||||| Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 156 bits (172), Expect = 5e-33 Identities = 250/359 (70%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 166168 GCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGT 166227 || ||||| || ||||| ||||| || ||||| || || | || ||||| | | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 166228 AACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTAT 166287 ||||| || |||||||||| || | || | || || || ||| | ||||| ||| Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 166288 CCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTC 166347 || || |||||||| ||||| ||||||||||| | || || |||||||||| |||| Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 166348 GTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCT 166407 || || |||||| | | || | | |||||||||||||| |||||| | | Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655 Query 166408 TACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCA 166467 | ||| || |||||||| ||||||||| || || || || | |||||||| || || Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715 Query 166468 TCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCT 166526 | | | ||| || |||| || | |||||||| || ||||| | ||||| || Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq59 Length=339703 Score = 143 bits (158), Expect = 3e-29 Identities = 187/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 166507 TTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAA 166566 || ||||| | ||||| || || | ||| || ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 166567 GCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGT 166626 || |||||||||||||| |||||||| || || ||| | | ||||| ||||||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 166627 GGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACC 166686 || || || ||| | ||||| || | | || || || | | | || ||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 166687 ACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAAC 166746 || |||| ||| ||| || | ||||||| |||||||||||| |||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 166747 ATCGTGGCTGCTCATGGTT 166765 || || ||| ||||||||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq25216 Length=8180 Score = 141 bits (156), Expect = 1e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 166417 GGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 166476 |||||||| ||||||||| | || || || || |||||||| || || | || || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 166477 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGT 166536 ||| || |||| || | |||||||| || ||||| | ||||| || || || | Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 166537 GGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTC 166596 || || ||||||| |||| |||| ||||| | |||||||||||||| |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 166597 CATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGG 166652 || ||| | || |||| ||||||||||| || || || ||| || ||||| || Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq3927 Length=49767 Score = 127 bits (140), Expect = 2e-24 Identities = 176/245 (72%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 167588 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTT 167647 ||| ||||||| || ||||| || || |||| || ||||| |||||| | || |||||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 167648 GAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATT 167707 || | | || || | || ||||| ||||| || || || | |||||| ||| Sbjct 26067 GAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAATT 26126 Query 167708 GCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCA 167767 || | ||||| || || ||||| || ||||| || || ||||| ||||||||||||| Sbjct 26127 GCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 26186 Query 167768 CCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAAC 167827 || |||||||| ||| | ||| || ||||| | || || | || || || ||||| Sbjct 26187 CCTAGTTTTGGTGTAGCATCTATA-TTCGATTCATCCTCTTTTTTCAAGGGTTTCATAAT 26245 Query 167828 TGGAC 167832 ||||| Sbjct 26246 TGGAC 26250 >seq8630 Length=23577 Score = 105 bits (116), Expect = 8e-18 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTG-GCTGCTCATGGTTACTT 166769 |||||||| ||||||||||| || || || || || ||||| |||||||||||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 166770 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCT 166829 ||||| | ||||||||||| ||| |||||||| ||||| || | || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 166830 CGCAGCATGGCCT 166842 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq4835 Length=43218 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTC 166770 ||||||| ||||||||||| || || || || || ||||| |||||||||||||| || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 166771 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTC 166814 || | | ||||||||||| ||| |||||||| ||||| || Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTC 9162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564483803502400