Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 322 5e-83
seq8546 241 1e-58
seq29420 156 5e-33
seq59 143 3e-29
seq25216 141 1e-28
seq3927 127 2e-24
seq8630 105 8e-18
seq4835 89.7 6e-13
>seq5412
Length=31808
Score = 322 bits (356), Expect = 5e-83
Identities = 488/692 (71%), Gaps = 8/692 (1%)
Strand=Plus/Minus
Query 166100 GGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCT 166158
|||||||| |||||||||| || | ||| | ||||| ||| || || || | ||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 166159 TTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTA 166218
||| | || || ||||| || ||||| ||||| || ||||| || || || |||||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 166219 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTT 166278
| || || ||||| || ||||||||||| || | | | | || || ||| |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 166279 CACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCT 166338
||||| ||||| || |||||||| ||||| ||||||||||| | || || ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 166339 TTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGG 166398
| |||| | || || |||||| | | || | | |||||||||||||| |||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 166399 GAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTT 166458
||| | || ||| || |||||||| ||||||||| || || || || || ||||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 166459 GCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 166518
|| | || | || || ||| || |||| || | ||| |||| || ||| | |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 166519 ATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 166578
||||| || || || ||| || ||||||| |||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 166579 ATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTC 166638
||||| |||||||| || || ||| | || ||||| |||||||||| || | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 166639 TCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAG 166698
| ||| || | | || || || | || | || ||||| |||| |||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 166699 TCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCT 166758
||| || | ||||||| | |||||||||| |||||||| || || ||||| ||||||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 166759 CATGGTTACTTCGGTCGCCTGATCTTCCAATA 166790
|||||||| || || || | |||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 166904 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATG 166963
|||| |||||||| || | | ||| |||| |||||||| | || |||||||| |||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 166964 TCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 167023
| | ||||| || || ||||||||||| ||||| || |||||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 167024 CTCTGGATCTTGCTGC 167039
|||| || || || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 241 bits (266), Expect = 1e-58
Identities = 322/445 (72%), Gaps = 6/445 (1%)
Strand=Plus/Minus
Query 166597 CATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGT 166656
|| ||| | || ||||| ||||||||||| || || | ||| | ||||| || |
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 166657 CTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTA 166715
| || || || | | | | || | || ||||| |||| | | || || | |||||
Sbjct 13144 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTA 13086
Query 166716 CAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCG 166775
|| ||||||||||| || || || | || || || |||||||||||||| || || ||
Sbjct 13085 CAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCG 13026
Query 166776 CCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGC 166835
| ||||||||||| ||| |||||| | |||| || | || |||||| | | ||
Sbjct 13025 ATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGC 12966
Query 166836 ATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 166895
|||||||| || ||||| ||||||||| || | ||| |||| || |||||||| | |||
Sbjct 12965 TTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCT 12906
Query 166896 CAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTG 166955
||||| ||||| |||||||| || | | ||| |||| |||||||| || |||
Sbjct 12905 AAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTG 12850
Query 166956 GGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCA 167015
||| ||| | | ||||| ||| || ||||||||||| ||||| || |||||||||||
Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790
Query 167016 CAACTTCCCTCTGGATCTTGCTGCT 167040
||||||| ||| || || ||||||
Sbjct 12789 TAACTTCCATCTAGACCTAGCTGCT 12765
>seq29420
Length=7120
Score = 156 bits (172), Expect = 5e-33
Identities = 250/359 (70%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 166168 GCACCTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGT 166227
|| ||||| || ||||| ||||| || ||||| || || | || ||||| | | ||
Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475
Query 166228 AACAACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTAT 166287
||||| || |||||||||| || | || | || || || ||| | ||||| |||
Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535
Query 166288 CCCATCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTC 166347
|| || |||||||| ||||| ||||||||||| | || || |||||||||| ||||
Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595
Query 166348 GTAGTCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCT 166407
|| || |||||| | | || | | |||||||||||||| |||||| | |
Sbjct 3596 AATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGT 3655
Query 166408 TACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCA 166467
| ||| || |||||||| ||||||||| || || || || | |||||||| || ||
Sbjct 3656 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGCT 3715
Query 166468 TCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCT 166526
| | | ||| || |||| || | |||||||| || ||||| | ||||| ||
Sbjct 3716 ACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq59
Length=339703
Score = 143 bits (158), Expect = 3e-29
Identities = 187/259 (72%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 166507 TTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAA 166566
|| ||||| | ||||| || || | ||| || ||||||| |||| |||| |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 166567 GCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGT 166626
|| |||||||||||||| |||||||| || || ||| | | ||||| |||||||||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 166627 GGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACC 166686
|| || || ||| | ||||| || | | || || || | | | || |||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 166687 ACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAAC 166746
|| |||| ||| ||| || | ||||||| |||||||||||| |||||||| || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 166747 ATCGTGGCTGCTCATGGTT 166765
|| || ||| |||||||||
Sbjct 52549 ATTGTAGCTACTCATGGTT 52567
>seq25216
Length=8180
Score = 141 bits (156), Expect = 1e-28
Identities = 173/236 (73%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 166417 GGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 166476
|||||||| ||||||||| | || || || || |||||||| || || | || ||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 166477 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGT 166536
||| || |||| || | |||||||| || ||||| | ||||| || || || |
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 166537 GGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTC 166596
|| || ||||||| |||| |||| ||||| | |||||||||||||| |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 166597 CATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGG 166652
|| ||| | || |||| ||||||||||| || || || ||| || ||||| ||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018
>seq3927
Length=49767
Score = 127 bits (140), Expect = 2e-24
Identities = 176/245 (72%), Gaps = 1/245 (0%)
Strand=Plus/Plus
Query 167588 TGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTT 167647
||| ||||||| || ||||| || || |||| || ||||| |||||| | || ||||||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 167648 GAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATT 167707
|| | | || || | || ||||| ||||| || || || | |||||| |||
Sbjct 26067 GAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAATT 26126
Query 167708 GCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCA 167767
|| | ||||| || || ||||| || ||||| || || ||||| |||||||||||||
Sbjct 26127 GCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 26186
Query 167768 CCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAAC 167827
|| |||||||| ||| | ||| || ||||| | || || | || || || |||||
Sbjct 26187 CCTAGTTTTGGTGTAGCATCTATA-TTCGATTCATCCTCTTTTTTCAAGGGTTTCATAAT 26245
Query 167828 TGGAC 167832
|||||
Sbjct 26246 TGGAC 26250
>seq8630
Length=23577
Score = 105 bits (116), Expect = 8e-18
Identities = 104/133 (78%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTG-GCTGCTCATGGTTACTT 166769
|||||||| ||||||||||| || || || || || ||||| |||||||||||||| ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 166770 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCT 166829
||||| | ||||||||||| ||| |||||||| ||||| || | || ||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 166830 CGCAGCATGGCCT 166842
|| || ||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
>seq4835
Length=43218
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 166711 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTC 166770
||||||| ||||||||||| || || || || || ||||| |||||||||||||| ||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 166771 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTC 166814
|| | | ||||||||||| ||| |||||||| ||||| ||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTC 9162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564483803502400
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