Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4197 181 1e-40 seq3874 91.5 2e-13 seq2863 91.5 2e-13 seq10261 89.7 6e-13 seq59222 86.0 7e-12 seq268 86.0 7e-12 seq29009 84.2 2e-11 seq14271 84.2 2e-11 seq2574 84.2 2e-11 seq216 84.2 2e-11 seq211 84.2 2e-11 seq119098 82.4 8e-11 seq1346 82.4 8e-11 seq55 82.4 8e-11 >seq4197 Length=36674 Score = 181 bits (200), Expect = 1e-40 Identities = 377/550 (69%), Gaps = 20/550 (4%) Strand=Plus/Plus Query 93107 TGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCT 93166 || || |||||||| || || |||||||| || ||| |||| || || | ||||||| Sbjct 23435 TGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCT 23494 Query 93167 CGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 || || || ||||||||||| | ||| || || ||||| || || |||||||| ||| Sbjct 23495 CGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCA 23553 Query 93226 TGCAAATGCCACAATACGTTCGGCAAA--ATT-TGCGGAATTACTGCTGATCCATTTTAA 93282 ||||| || || || || || || || ||| |||||||| | ||||| | Sbjct 23554 GGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA------ATCCAGCGGAG 23607 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| |||||||| || | | | || | || ||||| |||| || || | Sbjct 23608 CGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAAGAGCCGGTG 23667 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 |||| ||| ||||| || || |||| | || ||||||||||| |||| Sbjct 23668 CTTCTCGGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATTTCAGAGTGGAT 23727 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA-CTTCTT 93461 |||||| ||||| || ||||| |||||||| | ||| || | | ||| | || ||| Sbjct 23728 ATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACCTGGATCTCCTT 23787 Query 93462 GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 | || ||| | ||||||| || || || || ||||| ||||| || || || | Sbjct 23788 CA-TGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCGAAGAAGGCGA 23846 Query 93522 ATATATGCTTTATAAAATGTTTCTCATCA-TCTTTAAGCTT--ATCCCAAT--CGGATAG 93576 | ||| ||||| || ||||||||| ||| | || ||||||| ||| || Sbjct 23847 GGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAATGACGG--AG 23904 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||||| ||| || || || || ||| | ||||| ||||| ||||| || || || ||||| Sbjct 23905 ATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTCTTATACAT 23964 Query 93637 ATCCCATATG 93646 ||||||||| Sbjct 23965 CTCCCATATG 23974 >seq3874 Length=47250 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/105 (80%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 20505 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 20448 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| |||| |||| || |||||| || Sbjct 20447 GGGTTCAAATCCCACAGCTGTCAAAATATTTTT---ATTTTTTTT 20406 >seq2863 Length=44754 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||| || | || Sbjct 21647 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCCAACGAGGGC 21706 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||| || ||||| |||||||| Sbjct 21707 GTGGGTTCAAATCCCACTTCTGACAAA 21733 >seq10261 Length=20836 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||| || | || Sbjct 13067 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCCAACGAGGGC 13126 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| || ||||| ||||||| Sbjct 13127 GTGGGTTCAAATCCCACTTCTGACAA 13152 >seq59222 Length=1560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/106 (80%), Gaps = 7/106 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 650 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 707 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT--TTTGT 126368 |||||| || |||||| ||| | |||||| || ||||| ||||| Sbjct 708 GGGTTCAAATCCCACAGCTGTC-AATTAT--TTTGAATTAGTTTGT 750 >seq268 Length=153667 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/96 (80%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | Sbjct 39520 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGG 39579 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||||| | ||| || Sbjct 39580 CGTGGGTTCAAATCCCACTTCTGACAATTCATTCTT 39615 >seq29009 Length=7313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | || Sbjct 4881 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGATAGAGGGC 4940 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 4941 GTGGGTTCAAATCCCACTTCTGACA 4965 >seq14271 Length=15663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3464 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3407 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 3406 GGGTTCAAATCCCACAGCTGTCAATTTTTT 3377 >seq2574 Length=112922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 52916 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 52973 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 52974 GGGTTCAAATCCCACAGCTGTCAATTTTTT 53003 >seq216 Length=119494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 94068 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 94011 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| |||| || ||| Sbjct 94010 GGGTTCAAATCCCACAGCTGTCAAAACATAATT 93978 >seq211 Length=106066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 49377 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 49434 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| || || || Sbjct 49435 TTCAAATCCCACAGCTGTCAATTTTTTTTT 49464 >seq119098 Length=769 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 259 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 200 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| ||||||| || Sbjct 199 GTGGGTTCAAATCCCACTTCTGACAATTT 171 >seq1346 Length=170476 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/96 (80%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 118001 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 117942 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||| || ||||| ||||| |||||| ||| Sbjct 117941 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTTG 117908 >seq55 Length=230967 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 223226 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 223283 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 223284 GGGTTCAAATCCCACAGCTGTCAATTT 223310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554162851188560