Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 181 1e-40
seq3874 91.5 2e-13
seq2863 91.5 2e-13
seq10261 89.7 6e-13
seq59222 86.0 7e-12
seq268 86.0 7e-12
seq29009 84.2 2e-11
seq14271 84.2 2e-11
seq2574 84.2 2e-11
seq216 84.2 2e-11
seq211 84.2 2e-11
seq119098 82.4 8e-11
seq1346 82.4 8e-11
seq55 82.4 8e-11
>seq4197
Length=36674
Score = 181 bits (200), Expect = 1e-40
Identities = 377/550 (69%), Gaps = 20/550 (4%)
Strand=Plus/Plus
Query 93107 TGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCT 93166
|| || |||||||| || || |||||||| || ||| |||| || || | |||||||
Sbjct 23435 TGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCT 23494
Query 93167 CGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCCACGGC 93225
|| || || ||||||||||| | ||| || || ||||| || || |||||||| |||
Sbjct 23495 CGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCA 23553
Query 93226 TGCAAATGCCACAATACGTTCGGCAAA--ATT-TGCGGAATTACTGCTGATCCATTTTAA 93282
||||| || || || || || || || ||| |||||||| | ||||| |
Sbjct 23554 GGCAAAAGCAACTATGCGCTCAGCGAAGGATTCTGCGGAATCA------ATCCAGCGGAG 23607
Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342
||||| |||||||| || | | | || | || ||||| |||| || || |
Sbjct 23608 CGCCCAGTCGGCTTTCTTGGTGACAGCGGGAACAGTATCGATGGCGTGGAAGAGCCGGTG 23667
Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402
|||| ||| ||||| || || |||| | || ||||||||||| ||||
Sbjct 23668 CTTCTCGGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTGTACATTTCAGAGTGGAT 23727
Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA-CTTCTT 93461
|||||| ||||| || ||||| |||||||| | ||| || | | ||| | || |||
Sbjct 23728 ATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAAACCTGGATCTCCTT 23787
Query 93462 GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521
| || ||| | ||||||| || || || || ||||| ||||| || || || |
Sbjct 23788 CA-TGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGGCTGCGAAGAAGGCGA 23846
Query 93522 ATATATGCTTTATAAAATGTTTCTCATCA-TCTTTAAGCTT--ATCCCAAT--CGGATAG 93576
| ||| ||||| || ||||||||| ||| | || ||||||| ||| ||
Sbjct 23847 GGACATGAGAGATAAAGTGCTTCTCATCAGAAGTTAGGGTTTCCTCCCAATGACGG--AG 23904
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
||||| ||| || || || || ||| | ||||| ||||| ||||| || || || |||||
Sbjct 23905 ATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTTCGGCCTTCTTATACAT 23964
Query 93637 ATCCCATATG 93646
|||||||||
Sbjct 23965 CTCCCATATG 23974
>seq3874
Length=47250
Score = 91.5 bits (100), Expect = 2e-13
Identities = 84/105 (80%), Gaps = 5/105 (5%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 20505 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 20448
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
|||||| || |||||| ||| |||| |||| || |||||| ||
Sbjct 20447 GGGTTCAAATCCCACAGCTGTCAAAATATTTTT---ATTTTTTTT 20406
>seq2863
Length=44754
Score = 91.5 bits (100), Expect = 2e-13
Identities = 73/87 (84%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| ||| || | ||
Sbjct 21647 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCCAACGAGGGC 21706
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||| || ||||| ||||||||
Sbjct 21707 GTGGGTTCAAATCCCACTTCTGACAAA 21733
>seq10261
Length=20836
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/86 (84%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| ||| || | ||
Sbjct 13067 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCCAACGAGGGC 13126
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
|||||||| || ||||| |||||||
Sbjct 13127 GTGGGTTCAAATCCCACTTCTGACAA 13152
>seq59222
Length=1560
Score = 86.0 bits (94), Expect = 7e-12
Identities = 85/106 (80%), Gaps = 7/106 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 650 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 707
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT--TTTGT 126368
|||||| || |||||| ||| | |||||| || ||||| |||||
Sbjct 708 GGGTTCAAATCCCACAGCTGTC-AATTAT--TTTGAATTAGTTTGT 750
>seq268
Length=153667
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/96 (80%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAG 126321
|||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |
Sbjct 39520 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGG 39579
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||| || ||||| ||||||| | ||| ||
Sbjct 39580 CGTGGGTTCAAATCCCACTTCTGACAATTCATTCTT 39615
>seq29009
Length=7313
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | | ||
Sbjct 4881 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGATAGAGGGC 4940
Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347
|||||||| || ||||| ||||||
Sbjct 4941 GTGGGTTCAAATCCCACTTCTGACA 4965
>seq14271
Length=15663
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 3464 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3407
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| ||| || ||
Sbjct 3406 GGGTTCAAATCCCACAGCTGTCAATTTTTT 3377
>seq2574
Length=112922
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 52916 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 52973
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| ||| || ||
Sbjct 52974 GGGTTCAAATCCCACAGCTGTCAATTTTTT 53003
>seq216
Length=119494
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/93 (81%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 94068 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 94011
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || |||||| ||| |||| || |||
Sbjct 94010 GGGTTCAAATCCCACAGCTGTCAAAACATAATT 93978
>seq211
Length=106066
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 49377 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 49434
Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357
||| || |||||| ||| ||| || || ||
Sbjct 49435 TTCAAATCCCACAGCTGTCAATTTTTTTTT 49464
>seq119098
Length=769
Score = 82.4 bits (90), Expect = 8e-11
Identities = 72/89 (81%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 259 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 200
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||| || ||||| ||||||| ||
Sbjct 199 GTGGGTTCAAATCCCACTTCTGACAATTT 171
>seq1346
Length=170476
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/96 (80%), Gaps = 4/96 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 118001 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 117942
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358
|||||||| || ||||| ||||| |||||| |||
Sbjct 117941 GTGGGTTCAAATCCCACTTCTGAC--ATTATTTTTG 117908
>seq55
Length=230967
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 223226 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 223283
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| ||| ||
Sbjct 223284 GGGTTCAAATCCCACAGCTGTCAATTT 223310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554162851188560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |