Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq87 98.7 8e-16 >seq87 Length=177581 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || ||||| || || ||| | ||| || | | Sbjct 55577 ATGCAAATCTTTGTCAAGACCCTAACTGGCAAGACGATCACCCTCGAAGTTGAGAGCTCC 55518 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | ||||| || || ||||| |||||| ||||| || ||| Sbjct 55517 GACACAATTGACAACGTAAAGGCTAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAA 55458 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| || || |||||||||||| | || | || ||||||||| Sbjct 55457 CAGAGGCTCATCTTTGCCGGGAAGCAATTGGAAGATGGTCGCACACTTGCAGATTATAAT 55398 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || || ||| | |||||| | ||||| Sbjct 55397 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTCTGAGGGGTGG 55351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421041642854800