Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1075 122 2e-22
seq287 116 8e-21
seq142 91.5 3e-13
seq139107 87.8 4e-12
seq22779 87.8 4e-12
seq19874 87.8 4e-12
seq16761 87.8 4e-12
seq16369 87.8 4e-12
seq13027 87.8 4e-12
seq6898 87.8 4e-12
seq6272 87.8 4e-12
seq5956 87.8 4e-12
seq5379 87.8 4e-12
seq4147 87.8 4e-12
seq3931 87.8 4e-12
seq2632 87.8 4e-12
seq1683 87.8 4e-12
seq518 87.8 4e-12
seq208818 84.2 4e-11
seq37794 84.2 4e-11
seq30454 84.2 4e-11
seq7736 84.2 4e-11
seq6870 84.2 4e-11
seq13 84.2 4e-11
>seq1075
Length=66062
Score = 122 bits (134), Expect = 2e-22
Identities = 185/260 (71%), Gaps = 4/260 (2%)
Strand=Plus/Minus
Query 218517 TGACTTCATCGACAAGGAGCTCATTC--TTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574
||| || || | |||||||| |||| ||||| | || | ||| | | | || |||
Sbjct 20410 TGATTTTGTCCATAAGGAGCTAATTCAGTTTTC-CATGGCA-GATCTTCAAAGATCAATT 20353
Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634
|| ||| ||||||| ||||| || ||| | || | || || || || |||
Sbjct 20352 CCTTCTGTGATGGATGGGCTCAAACCCGGCCAGAGAAAAGTTCTTTTCTGTGCTTTTAAG 20293
Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694
|| ||||| ||| |||||| |||| | |||| ||| ||||||||| |||| | ||
Sbjct 20292 CGTAACCTTGTTAAAGAAACTAAGATTTCTCAATTTGGTGGTTATGTGGCCGAGAAGTCG 20233
Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754
| ||||||||| ||||| ||||||||| | | ||||| | ||||||||||| ||||||
Sbjct 20232 GCCTACCATCATGGTGATCAGAGTCTGTACAGCACCATTATTGGCATGGCACAAGACTAT 20173
Query 218755 GTGGGCAGTAACAACATGAA 218774
|| || || || ||||| ||
Sbjct 20172 GTTGGTAGCAATAACATTAA 20153
>seq287
Length=206468
Score = 116 bits (128), Expect = 8e-21
Identities = 184/260 (71%), Gaps = 4/260 (2%)
Strand=Plus/Minus
Query 218517 TGACTTCATCGACAAGGAGCTCATTC--TTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574
||| || || | |||||||| |||| ||||| | || | ||| | | | || |||
Sbjct 22658 TGATTTTGTCCATAAGGAGCTAATTCAGTTTTC-CATGGCA-GATCTTCAAAGATCAATT 22601
Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634
|| ||| ||||||| || ||||| ||| | || | || || || || |||
Sbjct 22600 CCTTCTGTGATGGATGGGCTGAAGCCCGGACAGAGAAAAGTTCTTTTCTGTGCTTTTAAG 22541
Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694
|| ||||| ||| |||||| ||| | |||| ||| ||||||||| | || | ||
Sbjct 22540 CGTAACCTTGTTAAAGAAACTAAAATTTCTCAATTTGGTGGTTATGTGGCTGAGAAGTCG 22481
Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754
| ||||||||||||||| ||||||||| | | ||||| | ||||||||||| ||||||
Sbjct 22480 GCCTACCATCACGGTGATCAGAGTCTGTACAGCACCATTATTGGCATGGCACAAGACTAT 22421
Query 218755 GTGGGCAGTAACAACATGAA 218774
|| || || || ||||| ||
Sbjct 22420 GTTGGTAGCAATAACATTAA 22401
>seq142
Length=117865
Score = 91.5 bits (100), Expect = 3e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||
Sbjct 35992 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 36051
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 36052 AGCCCCAC 36059
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 16804 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16863
Query 142563 CCCCAC 142568
||||||
Sbjct 16864 CCCCAC 16869
>seq139107
Length=681
Score = 87.8 bits (96), Expect = 4e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||
Sbjct 608 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 667
Query 142561 AGCCCCAC 142568
||||||||
Sbjct 668 AGCCCCAC 675
>seq22779
Length=9117
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 3671 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3730
Query 142563 CCCCAC 142568
||||||
Sbjct 3731 CCCCAC 3736
>seq19874
Length=10872
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 980 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1039
Query 142563 CCCCAC 142568
||||||
Sbjct 1040 CCCCAC 1045
>seq16761
Length=13197
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|| ||| |||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 5643 AGGCCGTTTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5702
Query 142563 CCCCAC 142568
||||||
Sbjct 5703 CCCCAC 5708
>seq16369
Length=13575
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6384 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6443
Query 142563 CCCCAC 142568
||||||
Sbjct 6444 CCCCAC 6449
>seq13027
Length=16844
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 1081 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1022
Query 142563 CCCCAC 142568
||||||
Sbjct 1021 CCCCAC 1016
>seq6898
Length=37379
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 22435 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22494
Query 142563 CCCCAC 142568
||||||
Sbjct 22495 CCCCAC 22500
>seq6272
Length=29147
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 27980 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 28039
Query 142563 CCCCAC 142568
||||||
Sbjct 28040 CCCCAC 28045
>seq5956
Length=46091
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 20915 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20856
Query 142563 CCCCAC 142568
||||||
Sbjct 20855 CCCCAC 20850
>seq5379
Length=31971
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 10605 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10664
Query 142563 CCCCAC 142568
||||||
Sbjct 10665 CCCCAC 10670
>seq4147
Length=36946
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 3478 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3537
Query 142563 CCCCAC 142568
||||||
Sbjct 3538 CCCCAC 3543
>seq3931
Length=47466
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|| ||| |||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 41824 AGGCCGTTTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 41765
Query 142563 CCCCAC 142568
||||||
Sbjct 41764 CCCCAC 41759
>seq2632
Length=52255
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 17180 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17121
Query 142563 CCCCAC 142568
||||||
Sbjct 17120 CCCCAC 17115
>seq1683
Length=150256
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 132456 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 132515
Query 142563 CCCCAC 142568
||||||
Sbjct 132516 CCCCAC 132521
>seq518
Length=81264
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 34163 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34222
Query 142563 CCCCAC 142568
||||||
Sbjct 34223 CCCCAC 34228
>seq208818
Length=497
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|| ||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 74 AGTCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15
Query 142563 CCCCAC 142568
||||||
Sbjct 14 CCCCAC 9
>seq37794
Length=4485
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 1540 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1599
Query 142563 CCCC 142566
||||
Sbjct 1600 CCCC 1603
>seq30454
Length=6716
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6653 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6712
Query 142563 CCCC 142566
||||
Sbjct 6713 CCCC 6716
>seq7736
Length=25444
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| |||
Sbjct 11253 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAG 11312
Query 142563 CCCCAC 142568
||||||
Sbjct 11313 CCCCAC 11318
>seq6870
Length=27503
Score = 84.2 bits (92), Expect = 4e-11
Identities = 58/66 (88%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||| | ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 5385 AGCCTGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5444
Query 142563 CCCCAC 142568
||||||
Sbjct 5445 CCCCAC 5450
>seq13
Length=452113
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 119942 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 119883
Query 142563 CCCC 142566
||||
Sbjct 119882 CCCC 119879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1022732512986554
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |