Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1075 122 2e-22 seq287 116 8e-21 seq142 91.5 3e-13 seq139107 87.8 4e-12 seq22779 87.8 4e-12 seq19874 87.8 4e-12 seq16761 87.8 4e-12 seq16369 87.8 4e-12 seq13027 87.8 4e-12 seq6898 87.8 4e-12 seq6272 87.8 4e-12 seq5956 87.8 4e-12 seq5379 87.8 4e-12 seq4147 87.8 4e-12 seq3931 87.8 4e-12 seq2632 87.8 4e-12 seq1683 87.8 4e-12 seq518 87.8 4e-12 seq208818 84.2 4e-11 seq37794 84.2 4e-11 seq30454 84.2 4e-11 seq7736 84.2 4e-11 seq6870 84.2 4e-11 seq13 84.2 4e-11 >seq1075 Length=66062 Score = 122 bits (134), Expect = 2e-22 Identities = 185/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTC--TTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 ||| || || | |||||||| |||| ||||| | || | ||| | | | || ||| Sbjct 20410 TGATTTTGTCCATAAGGAGCTAATTCAGTTTTC-CATGGCA-GATCTTCAAAGATCAATT 20353 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 || ||| ||||||| ||||| || ||| | || | || || || || ||| Sbjct 20352 CCTTCTGTGATGGATGGGCTCAAACCCGGCCAGAGAAAAGTTCTTTTCTGTGCTTTTAAG 20293 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 || ||||| ||| |||||| |||| | |||| ||| ||||||||| |||| | || Sbjct 20292 CGTAACCTTGTTAAAGAAACTAAGATTTCTCAATTTGGTGGTTATGTGGCCGAGAAGTCG 20233 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | ||||||||| ||||| ||||||||| | | ||||| | ||||||||||| |||||| Sbjct 20232 GCCTACCATCATGGTGATCAGAGTCTGTACAGCACCATTATTGGCATGGCACAAGACTAT 20173 Query 218755 GTGGGCAGTAACAACATGAA 218774 || || || || ||||| || Sbjct 20172 GTTGGTAGCAATAACATTAA 20153 >seq287 Length=206468 Score = 116 bits (128), Expect = 8e-21 Identities = 184/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTC--TTTTCTCGCGGTATGATGTGGAGCGTTCTATT 218574 ||| || || | |||||||| |||| ||||| | || | ||| | | | || ||| Sbjct 22658 TGATTTTGTCCATAAGGAGCTAATTCAGTTTTC-CATGGCA-GATCTTCAAAGATCAATT 22601 Query 218575 CCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAG 218634 || ||| ||||||| || ||||| ||| | || | || || || || ||| Sbjct 22600 CCTTCTGTGATGGATGGGCTGAAGCCCGGACAGAGAAAAGTTCTTTTCTGTGCTTTTAAG 22541 Query 218635 CGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 || ||||| ||| |||||| ||| | |||| ||| ||||||||| | || | || Sbjct 22540 CGTAACCTTGTTAAAGAAACTAAAATTTCTCAATTTGGTGGTTATGTGGCTGAGAAGTCG 22481 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTAT 218754 | ||||||||||||||| ||||||||| | | ||||| | ||||||||||| |||||| Sbjct 22480 GCCTACCATCACGGTGATCAGAGTCTGTACAGCACCATTATTGGCATGGCACAAGACTAT 22421 Query 218755 GTGGGCAGTAACAACATGAA 218774 || || || || ||||| || Sbjct 22420 GTTGGTAGCAATAACATTAA 22401 >seq142 Length=117865 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 35992 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 36051 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 36052 AGCCCCAC 36059 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 16804 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16863 Query 142563 CCCCAC 142568 |||||| Sbjct 16864 CCCCAC 16869 >seq139107 Length=681 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 608 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 667 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 668 AGCCCCAC 675 >seq22779 Length=9117 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3671 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3730 Query 142563 CCCCAC 142568 |||||| Sbjct 3731 CCCCAC 3736 >seq19874 Length=10872 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 980 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1039 Query 142563 CCCCAC 142568 |||||| Sbjct 1040 CCCCAC 1045 >seq16761 Length=13197 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 || ||| |||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5643 AGGCCGTTTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5702 Query 142563 CCCCAC 142568 |||||| Sbjct 5703 CCCCAC 5708 >seq16369 Length=13575 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6384 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6443 Query 142563 CCCCAC 142568 |||||| Sbjct 6444 CCCCAC 6449 >seq13027 Length=16844 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1081 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1022 Query 142563 CCCCAC 142568 |||||| Sbjct 1021 CCCCAC 1016 >seq6898 Length=37379 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 22435 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22494 Query 142563 CCCCAC 142568 |||||| Sbjct 22495 CCCCAC 22500 >seq6272 Length=29147 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 27980 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 28039 Query 142563 CCCCAC 142568 |||||| Sbjct 28040 CCCCAC 28045 >seq5956 Length=46091 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 20915 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20856 Query 142563 CCCCAC 142568 |||||| Sbjct 20855 CCCCAC 20850 >seq5379 Length=31971 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10605 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10664 Query 142563 CCCCAC 142568 |||||| Sbjct 10665 CCCCAC 10670 >seq4147 Length=36946 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3478 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3537 Query 142563 CCCCAC 142568 |||||| Sbjct 3538 CCCCAC 3543 >seq3931 Length=47466 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 || ||| |||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 41824 AGGCCGTTTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 41765 Query 142563 CCCCAC 142568 |||||| Sbjct 41764 CCCCAC 41759 >seq2632 Length=52255 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17180 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17121 Query 142563 CCCCAC 142568 |||||| Sbjct 17120 CCCCAC 17115 >seq1683 Length=150256 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 132456 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 132515 Query 142563 CCCCAC 142568 |||||| Sbjct 132516 CCCCAC 132521 >seq518 Length=81264 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 34163 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 34222 Query 142563 CCCCAC 142568 |||||| Sbjct 34223 CCCCAC 34228 >seq208818 Length=497 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 || ||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 74 AGTCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15 Query 142563 CCCCAC 142568 |||||| Sbjct 14 CCCCAC 9 >seq37794 Length=4485 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1540 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1599 Query 142563 CCCC 142566 |||| Sbjct 1600 CCCC 1603 >seq30454 Length=6716 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6653 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6712 Query 142563 CCCC 142566 |||| Sbjct 6713 CCCC 6716 >seq7736 Length=25444 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| ||| Sbjct 11253 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTGAG 11312 Query 142563 CCCCAC 142568 |||||| Sbjct 11313 CCCCAC 11318 >seq6870 Length=27503 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5385 AGCCTGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5444 Query 142563 CCCCAC 142568 |||||| Sbjct 5445 CCCCAC 5450 >seq13 Length=452113 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 119942 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 119883 Query 142563 CCCC 142566 |||| Sbjct 119882 CCCC 119879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1022732512986554