Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq9434 98.7 7e-16 seq87 84.2 2e-11 >seq9434 Length=50679 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || ||||| || || |||||||| ||| |||| ||| | | Sbjct 44937 ATGCAAATATTTGTGAAGACATTGACTGGAAAAACCATCACCTTGGAGGTTGAAAGCTCT 44878 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| |||||| || || || || | ||| |||| Sbjct 44877 GATACAATCGACAATGTTAAGGCTAAAATTCAGGACAAGGAAGGGATTCCTCCTGACCAG 44818 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | || ||||||||||| || ||||| || ||| ||| | || ||||| || Sbjct 44817 CAGCGTCTGATCTTTGCTGGAAAGCAACTGGAGGATGGCCGCACTCTAGCTGATTATAAC 44758 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||||||||||| || || ||||| | || | ||| | ||||| || | |||| Sbjct 44757 ATTCAGAAGGAGTCCACCCTTCACCTCGTCCTTCGTCTCCGAGGTGGTTTTTAA 44704 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || ||||| ||||| ||||| ||| | || Sbjct 45621 ATGCAAATTTTTGTCAAGACCCTTACTGGGAAAACTATTACTCTGGAAGTGGAGAGCTCA 45562 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| |||||| ||||| ||||| | || | |||| Sbjct 45561 GACACCATTGACAACGTGAAGGCAAAAATCCAGGATAAGGAGGGAATCCCACCAGACCAG 45502 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||||| |||||| || ||| | || ||||| || Sbjct 45501 CAGAGGTTGATCTTTGCTGGGAAGCAACTCGAAGATGGAAGGACTCTTGCAGATTATAAC 45442 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||| || || |||||| |||| | ||| | || || || Sbjct 45441 ATCCAAAAGGAGTCAACACTTCATTTGGTCCTTCGTCTTCGTGGTGG 45395 >seq87 Length=177581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | ||| | |||| |||||| | |||||||||||||| ||||| ||| Sbjct 55256 GATAAGGAGGGAATTCCTCCAGACCAGCAGAGATTGATCTTTGCTGGCAAGCAACTCGAA 55197 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || || | || ||||| || || ||||| ||||| || || ||| |||| | Sbjct 55196 GATGGAAGGACCCTTGCTGATTATAACATCCAGAAAGAATCAACCCTGCATTTGGTGCTC 55137 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 55136 CGTCTTCGTGGTGG 55123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356433089398276