Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq48644 134 1e-26 seq45117 134 1e-26 seq184 114 1e-20 seq10588 98.7 8e-16 seq9434 89.7 4e-13 seq87 89.7 4e-13 seq10008 84.2 2e-11 >seq48644 Length=2856 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || |||||||||||||| ||| | |||||| || || || ||||| || Sbjct 1864 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 1923 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || |||||||| ||||| ||||| ||| Sbjct 1924 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 1983 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| ||||| || || | ||| | ||| || ||||| || ||| Sbjct 1984 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2043 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2044 TTCACAAAGATCTGCAT 2060 >seq45117 Length=3449 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || |||||||||||||| ||| | |||||| || || || ||||| || Sbjct 2457 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 2516 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || |||||||| ||||| ||||| ||| Sbjct 2517 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 2576 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| ||||| || || | ||| | ||| || ||||| || ||| Sbjct 2577 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2636 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2637 TTCACAAAGATCTGCAT 2653 >seq184 Length=120086 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| ||||| || || || ||||||||| | || || ||| || || || ||||| Sbjct 5424 CGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACC 5365 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || || || ||||| || ||||| ||||| ||||| |||||| || Sbjct 5364 GGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 5305 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||||| ||||||||| || | ||| | ||| || || ||||| || Sbjct 5304 CACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGT 5245 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| || ||||||||||| Sbjct 5244 TTTGACGAAAATCTGCAT 5227 >seq10588 Length=20159 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || ||||| |||||||| | |||||| ||| ||||| || || ||| Sbjct 1055 GTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCA 1114 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||||||||| |||||||| ||||| ||||| ||||| || Sbjct 1115 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTC 1174 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | | || || |||| ||| | || ||||| |||| || Sbjct 1175 ACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTC 1234 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1235 TTAACAAAGATCTGCAT 1251 >seq9434 Length=50679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| || | | || || || | || || || ||||||||||| || || Sbjct 45164 ATTCCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCT 45223 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| || || | ||||||||| || || ||||| | || | | ||||||||| || Sbjct 45224 GCTAAT-GTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGG 45282 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| || || || || |||||| |||| | |||| |||||| | | || Sbjct 45283 TGGAATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTC 45342 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || |||||||| || || |||||||||||||| Sbjct 45343 CACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393 >seq87 Length=177581 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || || ||||| | || ||| |||||| | ||| || || Sbjct 55381 GTGGATTCCTTCTGGATATTATAATCTGCAAGTGTGCGACCATCTTCCAATTGCTTCCCG 55440 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||||||||| || ||||||||||| ||||| ||||| ||| Sbjct 55441 GCAAAGATGAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTAGCCTTT 55500 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | || || || | ||| | ||| ||||| || || || Sbjct 55501 ACGTTGTCAATTGTGTCGGAGCTCTCAACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTC 55560 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 55561 TTGACAAAGATTTGCAT 55577 >seq10008 Length=28325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || |||||| ||||| || || || |||||| || || || || Sbjct 13089 GTAGATTCTTTCTGGATGTTGAAATCGGCAATTGTTCGGCCATCTTCCAGCTGATTTCCG 13148 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 | | |||| ||||| ||||||||||| |||||||| || ||||| Sbjct 13149 GTGAAGATCAGACGTTGTTGGTCCGGGGGAATGCCCTCCTTGTC 13192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418149768333528