Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 134 1e-26
seq45117 134 1e-26
seq184 114 1e-20
seq10588 98.7 8e-16
seq9434 89.7 4e-13
seq87 89.7 4e-13
seq10008 84.2 2e-11
>seq48644
Length=2856
Score = 134 bits (148), Expect = 1e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || |||||||||||||| ||| | |||||| || || || ||||| ||
Sbjct 1864 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 1923
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||||||||| |||||||| || |||||||| ||||| ||||| |||
Sbjct 1924 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 1983
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||||| ||||| || || | ||| | ||| || ||||| || |||
Sbjct 1984 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2043
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 2044 TTCACAAAGATCTGCAT 2060
>seq45117
Length=3449
Score = 134 bits (148), Expect = 1e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || |||||||||||||| ||| | |||||| || || || ||||| ||
Sbjct 2457 GTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCG 2516
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||||||||| |||||||| || |||||||| ||||| ||||| |||
Sbjct 2517 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTC 2576
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||||| ||||| || || | ||| | ||| || ||||| || |||
Sbjct 2577 ACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTT 2636
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 2637 TTCACAAAGATCTGCAT 2653
>seq184
Length=120086
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||| ||||| || || || ||||||||| | || || ||| || || || |||||
Sbjct 5424 CGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACC 5365
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| |||| || || || ||||| || ||||| ||||| ||||| |||||| ||
Sbjct 5364 GGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTT 5305
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | || | |||||||| ||||||||| || | ||| | ||| || || ||||| ||
Sbjct 5304 CACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGT 5245
Query 114365 TTTTACAAAAATCTGCAT 114382
||| || |||||||||||
Sbjct 5244 TTTGACGAAAATCTGCAT 5227
>seq10588
Length=20159
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || || ||||| |||||||| | |||||| ||| ||||| || || |||
Sbjct 1055 GTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCA 1114
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | |||||||||||| |||||||| ||||| ||||| ||||| ||
Sbjct 1115 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTC 1174
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| || || | | || || |||| ||| | || ||||| |||| ||
Sbjct 1175 ACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTC 1234
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 1235 TTAACAAAGATCTGCAT 1251
>seq9434
Length=50679
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211
|| || ||||| || | | || || || | || || || ||||||||||| || ||
Sbjct 45164 ATTCCTCCACGGAGACGAAGCACCAAGTGAAGTGTCGACTCCTTTTGAATGTTATAGTCT 45223
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
||| || || | ||||||||| || || ||||| | || | | ||||||||| ||
Sbjct 45224 GCTAAT-GTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGTTGGTCTGG 45282
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
||||| || || || || |||||| |||| | |||| |||||| | | ||
Sbjct 45283 TGGAATTCCCTCCTTATCCTGAATCTTCGCCTTTACATTGTCAATGGTGTCCGAGCTCTC 45342
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || |||||||| || || ||||||||||||||
Sbjct 45343 CACTTCCAAAGTGATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 45393
>seq87
Length=177581
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| ||||| || || || || ||||| | || ||| |||||| | ||| || ||
Sbjct 55381 GTGGATTCCTTCTGGATATTATAATCTGCAAGTGTGCGACCATCTTCCAATTGCTTCCCG 55440
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||||||||| || ||||||||||| ||||| ||||| |||
Sbjct 55441 GCAAAGATGAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTAGCCTTT 55500
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||||| | || || || | ||| | ||| ||||| || || ||
Sbjct 55501 ACGTTGTCAATTGTGTCGGAGCTCTCAACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTC 55560
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| || |||||
Sbjct 55561 TTGACAAAGATTTGCAT 55577
>seq10008
Length=28325
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||||||||| || |||||| ||||| || || || |||||| || || || ||
Sbjct 13089 GTAGATTCTTTCTGGATGTTGAAATCGGCAATTGTTCGGCCATCTTCCAGCTGATTTCCG 13148
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
| | |||| ||||| ||||||||||| |||||||| || |||||
Sbjct 13149 GTGAAGATCAGACGTTGTTGGTCCGGGGGAATGCCCTCCTTGTC 13192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418149768333528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |