Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4197 179 7e-40 seq270 158 2e-33 >seq4197 Length=36674 Score = 179 bits (198), Expect = 7e-40 Identities = 436/647 (67%), Gaps = 25/647 (4%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGC-CAAGGA 42367 ||||| |||||||| | ||| |||||||||||||||| ||||||| | |||| Sbjct 23964 ATGTATAAGAAGGCCGAAGCCTCGTTCTGGACCGCCGAGGAGGTTGACCTCTCACAAGAT 23905 Query 42368 CACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTC-CTCAAAAAC 42419 | | | | |||||| | ||| ||||| | | | ||| || |||| Sbjct 23904 CTCCGTCAT-TGGGAGGAAACCCTAACT-TCTGATGAGAAGCACTTTATCTCTCATG--- 23850 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 | || ||||||||||| ||||| ||||| || || ||||| || || |||||| Sbjct 23849 -TCCTCGCCTTCTTCGCAGCCTCCGACGGGATCGTGCTCGAGAATCTCGCTGGGAGGTTC 23791 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| ||| | ||| | ||||| ||| |||||||||||||||||| || || ||| Sbjct 23790 ATGAAGGAGATCCAGGTTTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCAATCGAG 23731 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT-CGA 42598 || | |||||||| ||||| | || ||| | || || | || | ||| ||| Sbjct 23730 AATATCCACTCTGAAATGTACAGCCTTCTTCTCGAAACCCTGATTCGAGA-CTCGTCCGA 23672 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | || |||| ||| | ||||| || || | ||| ||| ||||| || ||||| Sbjct 23671 GAAGCACCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGACTG 23612 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 ||||||| |||||| || | ||| | | | |||| ||| | | || || ||| | Sbjct 23611 GGCGCTCCGCTGGATTGA---TTCCGCAGAATCCTTCGCTGAGCGCATAGTTGCTTTTGC 23555 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777 | ||| || || ||||||||||| || |||| | | || || ||||| || || Sbjct 23554 CTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCG 23495 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| | |||||| ||||| |||||||||||||| | ||| | | ||||| || ||| Sbjct 23494 AGGACT-GATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGGCTTGC 23436 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | || || || || ||| | | ||| | || ||| |||||| || |||| | Sbjct 23435 ACTGCGATTTCGCTTGTCTCATCT--ATGAGTTA-CTGAGGAACAAGCTTCCGGAGGAAC 23379 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 |||| | | || | | ||| || |||||||| |||| ||||||| Sbjct 23378 GGGTTCAAGGAATAGTAAAGGAAGCGGTGGAGATAGAGAGGGAGTTC 23332 >seq270 Length=105985 Score = 158 bits (174), Expect = 2e-33 Identities = 379/563 (67%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | |||| |||||||||||||||| | || || Sbjct 92345 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTA 92286 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCA---CTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 | | || | | | | ||||||| | || | |||| || |||| || Sbjct 92285 ACTCAAGATATCCGTCA-CTGGGAGGAAACTCTAACCACCGACGAGAAACATTTCATCTC 92227 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | || ||||||||||||||||| ||||| || || |||||||| ||| || Sbjct 92226 TCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTCTCGAGAACCTCGCCGGAAG 92167 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||||||||| || | ||| || ||||| ||| |||||| || |||||||| || | Sbjct 92166 GTTCATGAATGATATCCAGGTCTCCGAGGCTCGCGCCTTCTATGGTTTCCAGATCGCAGT 92107 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | || |||||| |||| || || |||| | ||| || | ||| | Sbjct 92106 TGAGAACATCCATTCTGAGATGTA---CAGCCTCCTCATTCAAACGCTAATTCGGGACTC 92050 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG-CATCAAGAAGAAGG 42651 || |||| || | || ||| | || || || || || ||||| | ||| ||||||| Sbjct 92049 CGACGAGAAGCACCGCCTCTTCCACGCAATTGACACCAT-CCCTGCCGTCACAAAGAAGG 91991 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711 || | ||||| | |||||||| | || || | | |||| |||| | | || | Sbjct 91990 CGCAGTGGGCCTTGCGATGGATCGA---TTCCTCCGAATCCTTCGCCGAGCGAATCGTCG 91934 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 | || | ||| || |||||||||||||| || |||| | || | |||||||| | Sbjct 91933 CTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCGCCGTATTCTGGCT-A 91875 Query 42772 AGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 | | | | ||| |||||| ||| | |||||||| ||||| || || ||| ||||| Sbjct 91874 AAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAACGAGCTTATATCCAGAGACGAA 91815 Query 42831 GGGCTGCATAGGGACTTTGCCTG 42853 || | || | || ||||| || Sbjct 91814 GGCTTACACTGTGATTTTGCTTG 91792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939763947401440