Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 179 7e-40
seq270 158 2e-33
>seq4197
Length=36674
Score = 179 bits (198), Expect = 7e-40
Identities = 436/647 (67%), Gaps = 25/647 (4%)
Strand=Plus/Minus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGC-CAAGGA 42367
||||| |||||||| | ||| |||||||||||||||| ||||||| | ||||
Sbjct 23964 ATGTATAAGAAGGCCGAAGCCTCGTTCTGGACCGCCGAGGAGGTTGACCTCTCACAAGAT 23905
Query 42368 CACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTC-CTCAAAAAC 42419
| | | | |||||| | ||| ||||| | | | ||| || ||||
Sbjct 23904 CTCCGTCAT-TGGGAGGAAACCCTAACT-TCTGATGAGAAGCACTTTATCTCTCATG--- 23850
Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479
| || ||||||||||| ||||| ||||| || || ||||| || || ||||||
Sbjct 23849 -TCCTCGCCTTCTTCGCAGCCTCCGACGGGATCGTGCTCGAGAATCTCGCTGGGAGGTTC 23791
Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539
||||| ||| | ||| | ||||| ||| |||||||||||||||||| || || |||
Sbjct 23790 ATGAAGGAGATCCAGGTTTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCAATCGAG 23731
Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT-CGA 42598
|| | |||||||| ||||| | || ||| | || || | || | ||| |||
Sbjct 23730 AATATCCACTCTGAAATGTACAGCCTTCTTCTCGAAACCCTGATTCGAGA-CTCGTCCGA 23672
Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658
| || |||| ||| | ||||| || || | ||| ||| ||||| || |||||
Sbjct 23671 GAAGCACCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGACTG 23612
Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718
||||||| |||||| || | ||| | | | |||| ||| | | || || ||| |
Sbjct 23611 GGCGCTCCGCTGGATTGA---TTCCGCAGAATCCTTCGCTGAGCGCATAGTTGCTTTTGC 23555
Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777
| ||| || || ||||||||||| || |||| | | || || ||||| || ||
Sbjct 23554 CTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCG 23495
Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837
||| | |||||| ||||| |||||||||||||| | ||| | | ||||| || |||
Sbjct 23494 AGGACT-GATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGGCTTGC 23436
Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897
| | || || || || ||| | | ||| | || ||| |||||| || |||| |
Sbjct 23435 ACTGCGATTTCGCTTGTCTCATCT--ATGAGTTA-CTGAGGAACAAGCTTCCGGAGGAAC 23379
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944
|||| | | || | | ||| || |||||||| |||| |||||||
Sbjct 23378 GGGTTCAAGGAATAGTAAAGGAAGCGGTGGAGATAGAGAGGGAGTTC 23332
>seq270
Length=105985
Score = 158 bits (174), Expect = 2e-33
Identities = 379/563 (67%), Gaps = 18/563 (3%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| ||||||||||| || | |||| |||||||||||||||| | || ||
Sbjct 92345 ATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTA 92286
Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCA---CTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415
| | || | | | | ||||||| | || | |||| || |||| ||
Sbjct 92285 ACTCAAGATATCCGTCA-CTGGGAGGAAACTCTAACCACCGACGAGAAACATTTCATCTC 92227
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|| | || ||||||||||||||||| ||||| || || |||||||| ||| ||
Sbjct 92226 TCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTCTCGAGAACCTCGCCGGAAG 92167
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
||||||||| || | ||| || ||||| ||| |||||| || |||||||| || |
Sbjct 92166 GTTCATGAATGATATCCAGGTCTCCGAGGCTCGCGCCTTCTATGGTTTCCAGATCGCAGT 92107
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592
|||||| | || |||||| |||| || || |||| | ||| || | ||| |
Sbjct 92106 TGAGAACATCCATTCTGAGATGTA---CAGCCTCCTCATTCAAACGCTAATTCGGGACTC 92050
Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG-CATCAAGAAGAAGG 42651
|| |||| || | || ||| | || || || || || ||||| | ||| |||||||
Sbjct 92049 CGACGAGAAGCACCGCCTCTTCCACGCAATTGACACCAT-CCCTGCCGTCACAAAGAAGG 91991
Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711
|| | ||||| | |||||||| | || || | | |||| |||| | | || |
Sbjct 91990 CGCAGTGGGCCTTGCGATGGATCGA---TTCCTCCGAATCCTTCGCCGAGCGAATCGTCG 91934
Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771
| || | ||| || |||||||||||||| || |||| | || | |||||||| |
Sbjct 91933 CTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCGCCGTATTCTGGCT-A 91875
Query 42772 AGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830
| | | | ||| |||||| ||| | |||||||| ||||| || || ||| |||||
Sbjct 91874 AAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAACGAGCTTATATCCAGAGACGAA 91815
Query 42831 GGGCTGCATAGGGACTTTGCCTG 42853
|| | || | || ||||| ||
Sbjct 91814 GGCTTACACTGTGATTTTGCTTG 91792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 939763947401440
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