Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9434 91.5 1e-13 seq36 82.4 6e-11 >seq9434 Length=50679 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 ||||| |||| || || || || || ||||| ||| ||||||||||||||| ||||| Sbjct 44708 AAACCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCA 44767 Query 33958 GCCA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 || | | || || | || |||| |||||| || ||||| ||||| |||||||| || Sbjct 44768 GCTAGAGTG-CGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 44826 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTA--ATGGAACTC-ACACTATCAGTAGA 34073 || | | || |||||| |||||| |||| || | || | |||||| Sbjct 44827 AGGAATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTG---TCGATTGTATCAGAGCT 44883 Query 34074 TTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| || | || || |||||||| || | ||| |||||||| |||||||| Sbjct 44884 TTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 >seq36 Length=331580 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| ||||||| ||| || ||||| || || ||||| ||||||||||| || Sbjct 256990 CCACCTCTAAGCCGCAACACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCAGC- 256932 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||||||| || || ||||||||||| | ||||||||| Sbjct 256931 AAGGGTGCGGCCATCCTCCAATTGTTTACCAGCAAATATCAGCCTCTGCTGATC 256878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395186755890388