Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq48644 149 1e-30 seq45117 149 1e-30 seq87 120 7e-22 seq9434 118 2e-21 seq35801 109 1e-18 seq4213 102 2e-16 seq1982 102 2e-16 seq22012 100 7e-16 seq1077 98.7 2e-15 >seq48644 Length=2856 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || ||||| || || ||||||||| Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| |||| ||||| || |||||||| |||||||| || |||| Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| ||||||||||| || || || | ||| ||||| || Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || || || |||||||| Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2060 >seq45117 Length=3449 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || ||||| || || ||||||||| Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| |||| ||||| || |||||||| |||||||| || |||| Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| ||||||||||| || || || | ||| ||||| || Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || || || || |||||||| Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCAT 2653 >seq87 Length=177581 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | || | ||| || | || | ||| ||| || ||||||||||| || || Sbjct 55350 TCCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTGC 55409 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || ||||| ||||| || || || ||||| || | |||||| | || Sbjct 55410 AAGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGGG 55469 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 || ||||| || ||||| || || || || ||||| || || | || |||| || Sbjct 55470 AATGCCTTCCTTGTCCTGTATCTTAGCCTTTACGTTGTCAATTGTGTCGGAGCTC---TC 55526 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||||||||| || || || |||||||| || || ||||| Sbjct 55527 AACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577 Score = 104 bits (114), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || ||||| || || | || | ||| ||||| | || || ||||| || Sbjct 54703 TCCTTTTGAATGTTATAATCTGCCAATGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAA 54762 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| ||| ||||| ||||||||||| || ||||| ||||| || Sbjct 54763 ATCAACCTCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTCGCCTTCACATTG 54822 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || ||||| | || || ||||| |||||||| ||||| Sbjct 54823 TCAATTGTGTCCGAGCTC---TCCACTTCCAATGTAATGGTCTTTCCGGTCAGGGTCTTC 54879 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 54880 ACGAAAATCTGCAT 54893 Score = 100 bits (110), Expect = 7e-16 Identities = 142/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||||||||| || || || | ||||||||| | ||| ||||| || ||| Sbjct 55615 TCCTTCTGGATATTATAGTCAGCTAGGGTTCTTCCGTCTTCAAGTTGCTTTCCGGCAAAG 55674 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | || || |||| || || || || ||||| || ||||| || || || Sbjct 55675 ATCAGCCTTTGCTG---ATCTGGAGGAATCCCCTCCTTATCTTGAATTTTAGCCTTAACA 55731 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| ||| || || || ||||| ||||| || || || || Sbjct 55732 TTGTCGATTGTGTCAGAGCT---TTCGACCTCAAGAGTGATGGTCTTACCTGTAAGTGTT 55788 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 55789 TTCACGAAGATCTGCAT 55805 >seq9434 Length=50679 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || || |||||||| ||||| || || Sbjct 45395 CCACCACGAAGACGAAGGACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCA 45454 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||| || || || ||||||| | ||| || |||| Sbjct 45455 AGAGTCCTTCCATCTTCGAGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 45514 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || |||||||||||||| || |||||||| || || | || |||| || Sbjct 45515 ATTCCCTCCTTATCCTGGATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTC---TCC 45571 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || ||||| || || |||||||| || || ||||| Sbjct 45572 ACTTCCAGAGTAATAGTTTTCCCAGTAAGGGTCTTGACAAAAATTTGCAT 45621 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| ||||| |||| ||| || || || || ||||| || || Sbjct 44711 CCACCTCGGAGACGAAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT 44770 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| ||||| || |||||||||||||| || | || Sbjct 44771 AGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 44830 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || ||||| ||||| || || || || || || | ||| ||| ||| Sbjct 44831 ATCCCTTCCTTGTCCTGAATTTTAGCCTTAACATTGTCGATTGTATCAGAGCT---TTCA 44887 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || || |||| ||||| || ||||| ||||| Sbjct 44888 ACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCTTCACAAATATTTGCAT 44937 Score = 113 bits (124), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||||| || || || |||||||| ||||| || Sbjct 44939 CCACCACGCAGGCGAAGGACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCT 44998 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||| || || || ||||| || | || || | |||| Sbjct 44999 AGTGTACGCCCATCTTCGAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGG 45058 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT--A 288424 || ||||||||||| |||||||| || || || || || |||| | || | ||| | Sbjct 45059 ATACCTTCTTTATCTTGGATTTTTGCCTTGACATTGTCAATAG--TGTCTGAACTCTCGA 45116 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || || || ||||| ||||| || || || || ||||||||| Sbjct 45117 CCTCAAGAGTTATGGTTTTCCCAGTCAGGGTTTTAACAAAAATCTGCATT 45166 Score = 107 bits (118), Expect = 4e-18 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||| ||| || ||||| ||||| || || Sbjct 45623 CCACCACGAAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTATAATCTGCA 45682 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| ||||| | ||| || || || ||||||| | ||| ||| |||||| Sbjct 45683 AGGGTCCTTCCATCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGA---TCTGGG 45739 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || || || || || ||||| || || || || | || |||| Sbjct 45740 GGAATTCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATTGTGTCTGAGCTC--- 45796 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| || || || ||||| |||||||||||||| Sbjct 45797 TCGACTTCAAGTGTGATAGTCTTGCCAGTTAGGGTCTTTACGAATATCTGCAT 45849 >seq35801 Length=5147 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || ||| || || || || || || || Sbjct 356 CCACCACGGAGACGAAGAACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGCC 297 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| || || | || || || || ||||||| | ||| || ||||| Sbjct 296 AATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGG---TCTGGC 240 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---T 288420 || || || || ||||| || ||||| || || || ||||| | || ||| | Sbjct 239 GGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTC---CGAGCTT 183 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| |||||||| |||| |||||||||||||||||||||| Sbjct 182 TCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTGACGAATATCTGCATT 129 >seq4213 Length=62956 Score = 102 bits (112), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| || |||| ||| ||| |||||||| || |||||||| Sbjct 19791 CCACCACGAAGACGAAGTACCAGGTGAAGCGTCTATTCCTTTTGGATGTTGTAGTCGGCA 19732 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||| | | ||||| |||||||| || || ||||| |||| Sbjct 19731 AGAGTATGGTCGCCTTTGAGCTACTTTCCGGCGAAGATGAGTCGTTGTTGGTCCGGTGGG 19672 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||| || || || ||||| || || || | ||| || || || Sbjct 19671 ATTCCCTCCTTGTCCTAAATCTTGGCCTTCACATTATCGATGGTGTCGGAAGACTCAACC 19612 Query 288427 TCGAGCGTGATCGTCTT-CCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| || |||||||| |||| | | || || | ||| |||||||| Sbjct 19611 TAGAGGGTTATCGTCTTCCCCGTTGAAGGTTTTCATGAAGATCTGCAT 19564 >seq1982 Length=56187 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 288313 CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCT 288372 || |||||||| | || || || |||||||| || ||||| || ||||||||| Sbjct 32279 CGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCC 32220 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || |||||||| || || ||||| || || || | ||| || || || ||||| Sbjct 32219 TCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGG 32160 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| || || || || ||||| |||||||| Sbjct 32159 GTTATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 32119 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 288313 CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCT 288372 || |||||||| | || || || |||||||| || ||||| || ||||||||| Sbjct 21942 CGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCC 21883 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || ||||| || || || ||||| || || || | ||| || || || ||||| Sbjct 21882 TCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGG 21823 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| || | || || ||||| |||||||| Sbjct 21822 GTTATCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCAT 21782 >seq22012 Length=9549 Score = 100 bits (110), Expect = 7e-16 Identities = 164/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || ||| || || || || || || || Sbjct 5841 CCACCACGGAGACGAAGAACAAGGTGAAGGGTTGATTCCTTCTGAATGTTGTAATCAGCC 5900 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| || || | || || || || ||||||| | ||| || ||||| Sbjct 5901 AATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGG---TCTGGC 5957 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---T 288420 || || || || ||||| || ||||| || || || ||||| | || ||| | Sbjct 5958 GGAATCCCCTCCTTGTCCTGAATCTTCGCCTTGACATTATCTATGGTGTC---CGAGCTT 6014 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| |||||||| || | |||||| ||||||||||||||| Sbjct 6015 TCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTTAACGAATATCTGCATT 6068 >seq1077 Length=76872 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | | || ||||||||||| || || || | || ||||||||| Sbjct 52849 CCACCACGAAGACGGATCACCAGATGAATCGTCGACTCCTTCTGAACGTTGTAGTCGGCG 52790 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||| | |||||||| ||| | || | | ||| || |||| Sbjct 52789 AGCGTACG---GTCTTCAAGCTGTTTTCCAGCGTATATTATCCTCTGCTGGTCCAGTGGG 52733 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 | ||||| || ||||| || || || ||||| || | || | ||| || || ||| Sbjct 52732 ACGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTAAATGGTGTCGGAAGACTCGACT 52673 Query 288427 --TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||| ||||||| || || ||| | |||||||||||||| Sbjct 52672 CCTCTAGCGTTATCATCTTCCCCGTTAGTGTCCTCACGAATATCTGCAT 52624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173796179478732