Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4197 116 8e-21 >seq4197 Length=36674 Score = 116 bits (128), Expect = 8e-21 Identities = 355/549 (65%), Gaps = 0/549 (0%) Strand=Plus/Minus Query 243207 GCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAA 243266 ||| ||| |||||||||| | |||| || || || || || | ||||| | Sbjct 23662 GCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGACTGGGCGCTCCG 23603 Query 243267 GTGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGG 243326 ||| | || ||| |||| || |||||||| | || || | | ||||||||||| Sbjct 23602 CTGGATTGATTCCGCAGAATCCTTCGCTGAGCGCATAGTTGCTTTTGCCTGCGTTGAAGG 23543 Query 243327 TATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCC 243386 ||| | || || || || |||||||| || |||||||| || ||| ||||||| Sbjct 23542 TATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGAGGACTGATGCC 23483 Query 243387 TGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGG 243446 ||| || | || |||||||| ||| |||||||| ||| | ||| | |||| Sbjct 23482 TGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGGCTTGCACTGCGATTTCGC 23423 Query 243447 TGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCAT 243506 | || || ||| || ||||||||| || ||| ||| || ||| | Sbjct 23422 TTGTCTCATCTATGAGTTACTGAGGAACAAGCTTCCGGAGGAACGGGTTCAAGGAATAGT 23363 Query 243507 CACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTAT 243566 | ||||| || || | || | ||| ||| | |||||||| | || ||| | | || Sbjct 23362 AAAGGAAGCGGTGGAGATAGAGAGGGAGTTCGTGTGCGACGCGCTGCCCTGCGCGTTGAT 23303 Query 243567 TGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCAT 243626 || |||||| || |||||| | || ||||| || || || || || | || | Sbjct 23302 AGGGATGAACGGTGTGCTCATGAGCCAATACATAGAGTTTGTGGCGGATAGGCTTCTGGC 23243 Query 243627 CGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCAT 243686 ||||| || | || ||| |||||| ||||| |||| | ||||||||||| Sbjct 23242 TGCGCTAGGATGTGGGAAGGTGTACGGTGTGTCAAACCCATTTGATTGGATGGAGCTCAT 23183 Query 243687 TTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGG 243746 || | || ||||| | || ||||| || ||| | || | ||||| || || Sbjct 23182 CTCCTTGCAGGGGAAGGCCAATTTCTTTGAGAAGAGAGTTGGGGATTACCAGAAGGCTTC 23123 Query 243747 TGTGATGAA 243755 ||||||||| Sbjct 23122 TGTGATGAA 23114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1097403044843900