Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4197 98.7 1e-15 seq270 91.5 2e-13 >seq4197 Length=36674 Score = 98.7 bits (108), Expect = 1e-15 Identities = 304/462 (66%), Gaps = 24/462 (5%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| | |||||| ||||| || | |||||| | |||| ||| |||||| Sbjct 23134 GTAATCCCCAACTCTCTTCTCAAAGAAATTGGCCTTCCCCTGCAAGGAGATGAGCTCCAT 23193 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC---CCA-ATCTGTTTG---- 125869 ||||||||||||| ||| || | || |||| ||| ||| | Sbjct 23194 CCAATCAAATGGGTT---TGA----CACACCGTA--CACCTTCCCACATCCTAGCGCAGC 23244 Query 125870 -AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 125928 || || | ||||| || |||| ||||| | ||| | || |||||| || || Sbjct 23245 CAGAAGCCTATCCGCCACAAACTCTATGTATTGGCTCATGAGCACACCGTTCATCCCTAT 23304 Query 125929 GAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCAC 125988 | || || |||||||| | | |||| || |||| || ||||| |||||| || Sbjct 23305 CAACGCGCAGGGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCTTCCTTTAC 23364 Query 125989 GATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCAC 126045 || | |||| ||| || | | | || | || || || | || ||| || Sbjct 23365 TATTCCTTGAACCCGTTCCTCCGGAAGCTTGTTCCTCAGTAACTCATAGATGAGA--CAA 23422 Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 | ||| || ||| | || ||||| |||||||| | || ||||||||| ||||| Sbjct 23423 GCGAAA-TCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCC 23481 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| || || ||||| || | ||| || ||||| || || || ||||||||||| Sbjct 23482 AGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGAT 23541 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || || || || || |||| | |||||||| ||||| Sbjct 23542 ACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAAGGA 23583 >seq270 Length=105985 Score = 91.5 bits (100), Expect = 2e-13 Identities = 297/454 (65%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| | |||||| ||||| || |||||||| | || |||| ||||| Sbjct 91506 GTAGTCGCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAATGAGATAAGATCCAT 91565 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGAC 125876 ||||||| ||||| | | | | || ||| ||||| | | || | Sbjct 91566 CCAATCAAACGGGTTGGGT-ACACCGTACACCTTCCCACACCCAAGCGCAACCAACAGCC 91624 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATC--TTCTCAGAGTTCATACCGATGAGGTT 125934 ||| | || |||||||||||||| |||| || || ||||| || || | Sbjct 91625 TATCAGCTACAAACTCAATGTACTCACTCATCAGTTTTCCA--TTCATCCCAATCAACGC 91682 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 ||||| |||||||| | || ||| ||||||| || ||||| || || | |||||| | Sbjct 91683 GCATGGCAGCGCGTCACAAATAAACTCCTTCTCGATCTCCACCGCATCTCTCACGATCCC 91742 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG-GCAAACT 126053 | | ||| | | | | || || | | | ||| | || ||||| | Sbjct 91743 TTTTACTCGGTCTTCAGGAAGCTTCTTCTTCAGGATTTCGTAGA-TCAAACAAGCAAAAT 91801 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| | || ||||| | ||| || || || || |||||| || ||||||||| | Sbjct 91802 CACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCTGGCATCA 91861 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| || || || | |||||| | || || || || ||||||||||| || |||| Sbjct 91862 GACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCA 91921 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 | || ||||| || | || ||||| || ||||| Sbjct 91922 CGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGA 91955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594459466609520