Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq48644 114 1e-20 seq45117 114 1e-20 seq9434 102 9e-17 seq184 98.7 1e-15 seq10588 93.3 5e-14 seq22012 91.5 2e-13 seq1982 89.7 6e-13 seq35801 86.0 7e-12 seq87 86.0 7e-12 >seq48644 Length=2856 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| || || || || || |||| |||||||| || || ||||| Sbjct 1869 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 1928 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | || ||||||||| ||| || ||| | | Sbjct 1929 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATT 1988 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | || || || || || ||||| || || || Sbjct 1989 GTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCAC 2048 Query 42197 AAAGATTTGCATTTTC 42212 |||||| ||||| ||| Sbjct 2049 AAAGATCTGCATCTTC 2064 >seq45117 Length=3449 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| || || || || || |||| |||||||| || || ||||| Sbjct 2462 CTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAA 2521 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | || ||||||||| ||| || ||| | | Sbjct 2522 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATT 2581 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | || || || || || ||||| || || || Sbjct 2582 GTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCAC 2641 Query 42197 AAAGATTTGCATTTTC 42212 |||||| ||||| ||| Sbjct 2642 AAAGATCTGCATCTTC 2657 >seq9434 Length=50679 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | |||||| || | ||| ||| || ||||||||||||||||| Sbjct 45850 ACCACCTCTGAGACGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATATTGTAATCAGC 45909 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| | || ||||| ||||| || || || || |||| || ||||| | || Sbjct 45910 AAGGGTCCTTCCATCCTCTAGTTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCAGGGGG 45969 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | ||||||||| ||| || ||| | ||| | | | ||||| ||| || Sbjct 45970 AATTCCCTCCTTGTCTTGGATCTTAGCTTTTA-CGTTGTCAATTGTGTCAGAGCT---TT 46025 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||| ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 46026 CAACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 46077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| || |||||||| ||||| || | || || || ||||| ||||| || Sbjct 44746 CTCCTTCTGAATGTTATAATCAGCTAGAGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAA 44805 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | ||||||||| ||| |||| | | | | | Sbjct 44806 GATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCC-TGAATTTTAGCCTTAACAT 44864 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||| || || | ||||||||||| || || | |||| Sbjct 44865 TGTCGATTGTATCAGAGCT---TTCAACCTCCAAGGTGATGGTTTTTCCAGTCAATGTCT 44921 Query 42193 TTACAAAGATTTGCAT 42208 | ||||| |||||||| Sbjct 44922 TCACAAATATTTGCAT 44937 >seq184 Length=120086 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||| || || || || | || |||||||||||||| ||||| Sbjct 5417 TCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAG 5358 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || || |||||||| | ||| | | ||||||||| ||| ||| || | | Sbjct 5357 ATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTG 5298 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||||| || |||| || || || || ||||| || || || || Sbjct 5297 TCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACG 5238 Query 42198 AAGATTTGCATTTT 42211 || || ||||| || Sbjct 5237 AAAATCTGCATCTT 5224 >seq10588 Length=20159 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| | ||| | ||| |||||| || |||||||||||||| || || | | Sbjct 1264 ACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCC 1323 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || || | ||||||||| | || | | |||||| Sbjct 1324 ATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTT 1383 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| || || | ||| | | | ||||| |||| || || || | | Sbjct 1384 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTC---TCAACCTCCAAGG 1439 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || || |||||||| |||||||| ||||| Sbjct 1440 TGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 >seq22012 Length=9549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||||||||||| ||||| | || || |||||||||||||| || Sbjct 5877 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTACCAGCAAAG 5936 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | | ||||||||| | || | | |||||||||| ||| | || | |||| | Sbjct 5937 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCC-TGAATCTTCGCCTTGACATT 5995 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| ||| || |||| ||||| || || || |||| ||||| Sbjct 5996 ATCTATGGTGTCCGAGCT---TTCAACCTCGAGGGTGATAGTCTTCCCTGTTAAAGTCTT 6052 Query 42194 TACAAAGATTTGCATT 42209 || || || |||||| Sbjct 6053 AACGAATATCTGCATT 6068 >seq1982 Length=56187 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || ||||| || |||| || |||||||| || ||||| Sbjct 32381 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAG 32322 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 ||||||||||||||||| | ||| | | |||||||||| Sbjct 32321 ATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 32283 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 |||| || |||||||| || ||||| ||||||||||||||||| | ||| | | ||||| Sbjct 32275 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 32216 Query 42112 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||||| ||| || || | | | | |||||| || || || |||| || | Sbjct 32215 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTA 32156 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 | || || ||||| || || || || ||||| ||||| ||| Sbjct 32155 TCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATCTTC 32115 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 42052 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCT 42111 |||| || |||||||| || ||||| ||||||||||||||||| | ||| | | ||||| Sbjct 21938 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 21879 Query 42112 TGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||||| ||| | || | || | | | | |||||| || || || |||| || Sbjct 21878 TGTCC-TGAATCTTGGCCTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTT 21820 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || || || ||||||| || || || ||||| ||||| ||| Sbjct 21819 ATCGTCTTCCCCGTTAAGGTTTTCACGAAGATCTGCATCTTC 21778 >seq35801 Length=5147 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||||||||||| ||||| | || || |||||||| ||||| || Sbjct 320 TCCTTCTGAATGTTGTAATCAGCCAATGTCCGTCCATCCTCGAGCTGCTTCCCAGCAAAG 261 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | | ||||||||| | || | | |||||||||| ||| | || | |||| | Sbjct 260 ATCAACCTCTGCTGGTCTGGCGGAATCCCCTCCTTGTCC-TGAATCTTCGCCTTGACATT 202 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| ||| || |||| |||||||| || || || | ||||| Sbjct 201 ATCTATGGTGTCCGAGCT---TTCAACCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTT 145 Query 42194 TACAAAGATTTGCATT 42209 || || || |||||| Sbjct 144 GACGAATATCTGCATT 129 >seq87 Length=177581 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||||| || | ||| ||||| || ||||| ||||| || Sbjct 55351 CCACCCCTCAGACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTATAATCTGCA 55410 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || | ||||| || || || ||||| | ||| ||||| | || Sbjct 55411 AGTGTGCGACCATCTTCCAATTGCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGGGA 55470 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCG---CTCGATTC 42157 | || ||||||||| || || || | ||| | || |||||| ||| || Sbjct 55471 ATGCCTTCCTTGTCCTGTATCTTAGCCTTTA-CGTTGTCAATTGTGTCGGAGCTC---TC 55526 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| ||||| || ||||| ||||| ||||| |||||||||||||| Sbjct 55527 AACTTCGAGGGTGATCGTCTTGCCAGTTAGGGTCTTGACAAAGATTTGCAT 55577 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| ||||| || || || || ||||| ||| | || || || ||| Sbjct 54463 TGCAGAGTGGACTCCTTCTGAATGTTATAGTCTGCGAGAGTACGCCCATCTTCGAGTTGC 54522 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||| || || ||||||| |||||||| | || | | |||||| || ||||||| Sbjct 54523 TTACCCGCAAAGATGAGTCTTTGCTGGTCTGGCGGGATACCCTCCTTATCTTGGATTTTT 54582 Query 42126 TGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCC 42182 |||| | | | ||||| |||| || || || | || || || || || Sbjct 54583 GCCTTGACATTGTCAATGGTGTCTGAGCTC---TCAACTTCAAGAGTTATTGTCTTACCA 54639 Query 42183 GTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || |||||||||||||| Sbjct 54640 GTGAGGGTTTTCACAAAGATTTGCAT 54665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540580974724960