Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq48644 129 6e-25 seq45117 129 6e-25 seq9434 109 5e-19 seq184 102 8e-17 >seq48644 Length=2856 Score = 129 bits (142), Expect = 6e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | ||||| |||||| || ||||| |||| Sbjct 1867 GACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCG 1926 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || ||||| ||||| ||| || ||| | | Sbjct 1927 AAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACA 1986 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| || || ||||| | || | ||| || || || || ||||| Sbjct 1987 TTG-TCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2045 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2046 CACAAAGATCTGCAT 2060 >seq45117 Length=3449 Score = 129 bits (142), Expect = 6e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | ||||| |||||| || ||||| |||| Sbjct 2460 GACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCG 2519 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| |||||||| || || ||||| ||||| ||| || ||| | | Sbjct 2520 AAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACA 2579 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| || || ||||| | || | ||| || || || || ||||| Sbjct 2580 TTG-TCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2638 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2639 CACAAAGATCTGCAT 2653 >seq9434 Length=50679 Score = 109 bits (120), Expect = 5e-19 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || || |||||||| ||| | |||||| || |||||||| || |||| Sbjct 44972 GACTCCTTCTGGATATTGTAGTCAGCTAGT-GTACGCCCATCTTCGAGTTGCTTCCCGGC 45030 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| || | || ||||| || || ||||||||||| || ||||||| || | Sbjct 45031 AAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTATCTTGGATTTTTGCCTTGAC 45090 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||| ||||| | || | ||||| |||||||| |||| Sbjct 45091 ATTG-TCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATGGTTTTCCCAGTCAGGGTTT 45149 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 45150 TAACAAAAATCTGCAT 45165 >seq184 Length=120086 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || ||||| ||| | || || ||||| || || ||||||| Sbjct 5420 GATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCG 5361 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 ||||||| || || ||||| || || || ||||| ||||| ||| ||| || | | Sbjct 5360 AAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACA 5301 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| || || ||||||| || | ||| ||||| ||||| ||||| Sbjct 5300 TTGT-CGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTT 5242 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 5241 GACGAAAATCTGCAT 5227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493858045891680