Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 129 6e-25
seq45117 129 6e-25
seq9434 109 5e-19
seq184 102 8e-17
>seq48644
Length=2856
Score = 129 bits (142), Expect = 6e-25
Identities = 147/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||||||||||||| | ||||| |||||| || ||||| ||||
Sbjct 1867 GACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCG 1926
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| |||||||| |||||||| || || ||||| ||||| ||| || ||| | |
Sbjct 1927 AAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACA 1986
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| || || ||||| | || | ||| || || || || |||||
Sbjct 1987 TTG-TCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2045
Query 138600 TACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 2046 CACAAAGATCTGCAT 2060
>seq45117
Length=3449
Score = 129 bits (142), Expect = 6e-25
Identities = 147/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||||||||||||| | ||||| |||||| || ||||| ||||
Sbjct 2460 GACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGTTTGCCGGCG 2519
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| |||||||| |||||||| || || ||||| ||||| ||| || ||| | |
Sbjct 2520 AAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTCGCTTTCACA 2579
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| || || ||||| | || | ||| || || || || |||||
Sbjct 2580 TTG-TCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTTAGTGTTTT 2638
Query 138600 TACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 2639 CACAAAGATCTGCAT 2653
>seq9434
Length=50679
Score = 109 bits (120), Expect = 5e-19
Identities = 145/196 (74%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479
|||||||| || || |||||||| ||| | |||||| || |||||||| || ||||
Sbjct 44972 GACTCCTTCTGGATATTGTAGTCAGCTAGT-GTACGCCCATCTTCGAGTTGCTTCCCGGC 45030
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538
| |||| || | || ||||| || || ||||||||||| || ||||||| || |
Sbjct 45031 AAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTATCTTGGATTTTTGCCTTGAC 45090
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||||| | ||| ||||| | || | ||||| |||||||| ||||
Sbjct 45091 ATTG-TCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATGGTTTTCCCAGTCAGGGTTT 45149
Query 138599 TTACAAAAATCTGCAT 138614
| ||||||||||||||
Sbjct 45150 TAACAAAAATCTGCAT 45165
>seq184
Length=120086
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || || ||||| ||| | || || ||||| || || |||||||
Sbjct 5420 GATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCG 5361
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
||||||| || || ||||| || || || ||||| ||||| ||| ||| || | |
Sbjct 5360 AAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACA 5301
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | |||||||| || || ||||||| || | ||| ||||| ||||| |||||
Sbjct 5300 TTGT-CGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTT 5242
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 5241 GACGAAAATCTGCAT 5227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 493858045891680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |