Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 105 5e-18
seq45117 105 5e-18
seq9434 104 2e-17
seq87 93.3 3e-14
seq10588 91.5 1e-13
seq184 86.0 4e-12
>seq48644
Length=2856
Score = 105 bits (116), Expect = 5e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| |||||||| || ||||| |||||||| ||| ||| | | |||| |||| |||
Sbjct 1858 TGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGT 1917
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||| ||| | || | |||||| ||||| ||| || ||||||||||| || ||
Sbjct 1918 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC 1977
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || ||| | ||| || |||| ||| || || || || ||
Sbjct 1978 GCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTT 2037
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|| ||||| ||||| || ||||| ||
Sbjct 2038 AGTGTTTTCACAAAGATCTGCATCTT 2063
>seq45117
Length=3449
Score = 105 bits (116), Expect = 5e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| |||||||| || ||||| |||||||| ||| ||| | | |||| |||| |||
Sbjct 2451 TGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGT 2510
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
||||| ||| | || | |||||| ||||| ||| || ||||||||||| || ||
Sbjct 2511 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC 2570
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || || ||| | ||| || |||| ||| || || || || ||
Sbjct 2571 GCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTT 2630
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|| ||||| ||||| || ||||| ||
Sbjct 2631 AGTGTTTTCACAAAGATCTGCATCTT 2656
>seq9434
Length=50679
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032
|||||||| || || || || ||||| ||||| ||| ||| | | | || || | |||
Sbjct 44735 TGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT-AGAGTGCGGCCATCCTCCAGTTG 44793
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|| ||||| | |||| |||||| ||||| ||||| ||||||||||| ||||||
Sbjct 44794 CTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATTTT 44853
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| ||| | || || ||||| |||| || || ||||| |||||||| || ||
Sbjct 44854 AGCCTTAACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCAGT 44913
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| ||||||||
Sbjct 44914 CAATGTCTTCACAAATATTTGCAT 44937
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| |||||||| || || || ||||| ||||| ||||| ||| | || | |||||
Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| ||| || ||||| | ||||| | ||| ||||| ||| ||||| ||||| ||
Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| || || | || || || || | || || || | ||||| |||||
Sbjct 45533 ATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTC 45592
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || || || |||||||||||||||
Sbjct 45593 CCAGTAAGGGTCTTGACAAAAATTTGCATA 45622
>seq87
Length=177581
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| ||||||||||| || ||||| || ||||| ||||| || | || | |||||
Sbjct 54912 AACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 54971
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||| ||||| || | ||||| | ||| ||||| ||| ||||| ||||| ||
Sbjct 54972 GAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTG 55031
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| || ||| || | || || || || | || || || || |||||||| ||
Sbjct 55032 AATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTCTT 55091
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || ||||| || ||||| ||||||
Sbjct 55092 TCCCGTAAGGGTTTTGACGAAAATCTGCATA 55122
>seq10588
Length=20159
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||||||||| || || || || |||||||| ||| | | | || || | ||
Sbjct 1049 TGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGC 1108
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | ||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 1109 TTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTA 1168
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || |||||||| | || || || ||||| ||||| || || |||
Sbjct 1169 GCCTTCACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 1228
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| || || ||||| || |||||
Sbjct 1229 AATGTCTTAACAAAGATCTGCAT 1251
>seq184
Length=120086
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || || || || || || || ||||||||| ||| ||| | || |||| ||
Sbjct 5429 TGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGC 5370
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092
|| || ||| | || | || || ||||| |||||||||||||||||| || |||
Sbjct 5369 TTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTT 5310
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| || ||| | || || || ||| ||| || || | ||| || || ||||| ||
Sbjct 5309 GC-CTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGT 5251
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181
||| ||||| || ||||| ||||| ||||
Sbjct 5250 CAGGGTTTTGACGAAAATCTGCATCTTTG 5222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355703751000290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |