Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq48644 105 5e-18 seq45117 105 5e-18 seq9434 104 2e-17 seq87 93.3 3e-14 seq10588 91.5 1e-13 seq184 86.0 4e-12 >seq48644 Length=2856 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || ||||| |||||||| ||| ||| | | |||| |||| ||| Sbjct 1858 TGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGT 1917 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | || | |||||| ||||| ||| || ||||||||||| || || Sbjct 1918 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC 1977 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || ||| | ||| || |||| ||| || || || || || Sbjct 1978 GCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTT 2037 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| ||||| || ||||| || Sbjct 2038 AGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || ||||| |||||||| ||| ||| | | |||| |||| ||| Sbjct 2451 TGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACCGTCCTCTAGCTGT 2510 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | || | |||||| ||||| ||| || ||||||||||| || || Sbjct 2511 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTC 2570 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || ||| | ||| || |||| ||| || || || || || Sbjct 2571 GCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTATCGTCTTCCCGGTT 2630 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| ||||| || ||||| || Sbjct 2631 AGTGTTTTCACAAAGATCTGCATCTT 2656 >seq9434 Length=50679 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||| || || || || ||||| ||||| ||| ||| | | | || || | ||| Sbjct 44735 TGAAGGGTGGACTCCTTCTGAATGTTATAATCAGCT-AGAGTGCGGCCATCCTCCAGTTG 44793 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | |||| |||||| ||||| ||||| ||||||||||| |||||| Sbjct 44794 CTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGAATTTT 44853 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || ||| | || || ||||| |||| || || ||||| |||||||| || || Sbjct 44854 AGCCTTAACATTGTCGATTGTATCAGAGCTTTCAACCTCCAAGGTGATGGTTTTTCCAGT 44913 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| |||||||| Sbjct 44914 CAATGTCTTCACAAATATTTGCAT 44937 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || || ||||| ||||| ||||| ||| | || | ||||| Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | ||||| | ||| ||||| ||| ||||| ||||| || Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || || | || || || || | || || || | ||||| ||||| Sbjct 45533 ATTTTTGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTC 45592 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||||||||||||| Sbjct 45593 CCAGTAAGGGTCTTGACAAAAATTTGCATA 45622 >seq87 Length=177581 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||||||||| || ||||| || ||||| ||||| || | || | ||||| Sbjct 54912 AACCAAATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 54971 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| ||||| || | ||||| | ||| ||||| ||| ||||| ||||| || Sbjct 54972 GAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTG 55031 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || ||| || | || || || || | || || || || |||||||| || Sbjct 55032 AATCTTAGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTCTT 55091 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || ||||| |||||| Sbjct 55092 TCCCGTAAGGGTTTTGACGAAAATCTGCATA 55122 >seq10588 Length=20159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || || |||||||| ||| | | | || || | || Sbjct 1049 TGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGC 1108 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||||||||||||||| ||||| ||||||||||| || || Sbjct 1109 TTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTA 1168 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || |||||||| | || || || ||||| ||||| || || ||| Sbjct 1169 GCCTTCACATTATCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATGGTCTTGCCAGTC 1228 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 1229 AATGTCTTAACAAAGATCTGCAT 1251 >seq184 Length=120086 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || || ||||||||| ||| ||| | || |||| || Sbjct 5429 TGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGC 5370 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || ||| | || | || || ||||| |||||||||||||||||| || ||| Sbjct 5369 TTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTT 5310 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || || ||| ||| || || | ||| || || ||||| || Sbjct 5309 GC-CTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGT 5251 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTG 15181 ||| ||||| || ||||| ||||| |||| Sbjct 5250 CAGGGTTTTGACGAAAATCTGCATCTTTG 5222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355703751000290