Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq87 116 3e-21
seq184 114 1e-20
seq48644 105 6e-18
seq45117 105 6e-18
seq9434 102 7e-17
>seq87
Length=177581
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| | |||||| |||||||| || ||||| |||||||| | ||| | ||| ||
Sbjct 55140 CACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 55199
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
| ||| || || || | ||||||| |||||||| || ||||| || || ||||||||
Sbjct 55200 GAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTG 55259
Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
||| || ||||| || | || | |||||| || ||| ||||| ||||||| || |
Sbjct 55260 AATCTTAGCTTTGA-CGTTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCT 55318
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||| || | ||| || ||||| || |||||
Sbjct 55319 TGCCAGTCAAAGTCTTCACAAAGATCTGCAT 55349
Score = 100 bits (110), Expect = 3e-16
Identities = 149/207 (72%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195
|| || || |||||||| ||||||||||||| ||| || | || ||| |||||||
Sbjct 55375 TGGAGGGTGGATTCCTTCTGGATATTATAAT--CTGCAAGTGTGCGACCATCTTCCAATT 55432
Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255
| || || || | || | | || ||||| || ||||||||||| || || || || |
Sbjct 55433 GCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCT 55492
Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
| || | || | || | |||||||| ||| |||||||| || | ||| |||||
Sbjct 55493 TAGCCTTTA-CGTTGTCAATTGTGTCGGAGCTCTCAACTTCGAGGGTGATCGTCTTGCCA 55551
Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341
||||| || || ||||| |||||||||
Sbjct 55552 GTTAGGGTCTTGACAAAGATTTGCATC 55578
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||| || || || || || ||||| |||||||| | ||| | ||| || | |||
Sbjct 54918 ATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCGAGTTG 54977
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
|| || || | ||||||| |||||||| || || || || || ||||||||||| ||
Sbjct 54978 CTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGAATCTT 55037
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
||||| || | || | ||||| || ||| ||||| | |||| || || || |
Sbjct 55038 AGCTTTGA-CGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTCTTTCCCG 55096
Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340
| || ||||| || ||||| |||||
Sbjct 55097 TAAGGGTTTTGACGAAAATCTGCAT 55121
Score = 82.4 bits (90), Expect = 7e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| ||||| || || | | || || || || || || ||||| ||||||||||| ||
Sbjct 55576 ATCCCTCCACGAAGACGGAGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCA 55635
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
||| | |||| | || || | ||| ||||| || | |||| | |||||| || ||
Sbjct 55636 GCT-AGGGTTCTTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGG 55694
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289
||||| || || |||||||||||||| || | || | ||||| || ||
Sbjct 55695 AGGAATCCCCTCCTTATCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTC 55754
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| || ||||| | || || || || || ||||| || || || ||||||
Sbjct 55755 GACCTCAAGAGTGATGGTCTTACCTGTAAGTGTTTTCACGAAGATCTGCATC 55806
>seq184
Length=120086
Score = 114 bits (126), Expect = 1e-20
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190
||| || || ||||| |||||||| |||||||| |||||| || |||| ||| ||
Sbjct 5436 CACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTC 5377
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
| || || || ||| | || | ||||||||||| || ||||| ||||| || || ||
Sbjct 5376 TAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 5317
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|| ||| || | || | ||||||||| || ||||| ||||| || | ||| ||
Sbjct 5316 GATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTT 5257
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || ||||| || ||||| ||||||
Sbjct 5256 ACCCGTCAGGGTTTTGACGAAAATCTGCATC 5226
>seq48644
Length=2856
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| || || || || || |||||||| || || || ||| |
Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | || || | ||||| || ||| | || | || ||||||||||| ||
Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|||||||| || || || || || ||| | || | |||||||||||| || ||
Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || | ||| || |||||||| ||||| ||||| || ||||||
Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2061
>seq45117
Length=3449
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| || || || || || |||||||| || || || ||| |
Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | || || | ||||| || ||| | || | || ||||||||||| ||
Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|||||||| || || || || || ||| | || | |||||||||||| || ||
Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || | ||| || |||||||| ||||| ||||| || ||||||
Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2654
>seq9434
Length=50679
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTC 45190
|| ||||| || || || ||||| |||||||| || || ||| | || ||| ||
Sbjct 44957 ACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCT-AGTGTACGCCCATCTTC 45015
Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250
| ||| || || || | || | || ||||||||| || || || ||||||||||||||
Sbjct 45016 GAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTATCTTG 45075
Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
|||||| |||| || | ||||| ||| |||||| || ||||| | |||||
Sbjct 45076 GATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATGGTTTT 45135
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || ||||| |||||||| |||||
Sbjct 45136 CCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165
Score = 102 bits (112), Expect = 7e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||| || ||||| ||||||||||| |||||||| | || | ||| || | |||
Sbjct 45418 ATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCGAGTTG 45477
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
|| || || | ||||| | |||||||| || || || || || ||||| || |||||
Sbjct 45478 CTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATTTT 45537
Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
| || | || | || | |||||| || ||| ||||| ||||||| ||||| || |
Sbjct 45538 TGCCTTCA-CGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTCCCAG 45596
Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || ||||||||||||||
Sbjct 45597 TAAGGGTCTTGACAAAAATTTGCAT 45621
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449813278396240
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