Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq87 116 3e-21 seq184 114 1e-20 seq48644 105 6e-18 seq45117 105 6e-18 seq9434 102 7e-17 >seq87 Length=177581 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| |||||||| || ||||| |||||||| | ||| | ||| || Sbjct 55140 CACCAAATGCAGGGTTGATTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTC 55199 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| || || || | ||||||| |||||||| || ||||| || || |||||||| Sbjct 55200 GAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCCTTATCTTG 55259 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || ||||| || | || | |||||| || ||| ||||| ||||||| || | Sbjct 55260 AATCTTAGCTTTGA-CGTTGTCAATGGTGTCAGAGCTCTCAACTTCAAGAGTAATAGTCT 55318 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || | ||| || ||||| || ||||| Sbjct 55319 TGCCAGTCAAAGTCTTCACAAAGATCTGCAT 55349 Score = 100 bits (110), Expect = 3e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 || || || |||||||| ||||||||||||| ||| || | || ||| ||||||| Sbjct 55375 TGGAGGGTGGATTCCTTCTGGATATTATAAT--CTGCAAGTGTGCGACCATCTTCCAATT 55432 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || || | || | | || ||||| || ||||||||||| || || || || | Sbjct 55433 GCTTCCCGGCAAAGATGAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCT 55492 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 | || | || | || | |||||||| ||| |||||||| || | ||| ||||| Sbjct 55493 TAGCCTTTA-CGTTGTCAATTGTGTCGGAGCTCTCAACTTCGAGGGTGATCGTCTTGCCA 55551 Query 45315 GTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || ||||| ||||||||| Sbjct 55552 GTTAGGGTCTTGACAAAGATTTGCATC 55578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || || || ||||| |||||||| | ||| | ||| || | ||| Sbjct 54918 ATGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCAAGGGTCCTTCCATCTTCGAGTTG 54977 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | ||||||| |||||||| || || || || || ||||||||||| || Sbjct 54978 CTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCTTGAATCTT 55037 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||||| || | || | ||||| || ||| ||||| | |||| || || || | Sbjct 55038 AGCTTTGA-CGTTGTCAATTGTGTCAGAGCTCTCAACTTCCAACGTAATGGTCTTTCCCG 55096 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || ||||| ||||| Sbjct 55097 TAAGGGTTTTGACGAAAATCTGCAT 55121 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || ||||| || || | | || || || || || || ||||| ||||||||||| || Sbjct 55576 ATCCCTCCACGAAGACGGAGAACCAGGTGGAGTGTGGACTCCTTCTGGATATTATAGTCA 55635 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| | || || | ||| ||||| || | |||| | |||||| || || Sbjct 55636 GCT-AGGGTTCTTCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAGCCTTTGCTGATCTGG 55694 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 ||||| || || |||||||||||||| || | || | ||||| || || Sbjct 55695 AGGAATCCCCTCCTTATCTTGAATTTTAGCCTTAACATTGTCGATTGTGTCAGAGCTTTC 55754 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || ||||| | || || || || || ||||| || || || |||||| Sbjct 55755 GACCTCAAGAGTGATGGTCTTACCTGTAAGTGTTTTCACGAAGATCTGCATC 55806 >seq184 Length=120086 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || ||||| |||||||| |||||||| |||||| || |||| ||| || Sbjct 5436 CACCAGGTGGAGCGTCGATTCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTC 5377 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | || | ||||||||||| || ||||| ||||| || || || Sbjct 5376 TAGCTGCTTACCGGCGAAGATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 5317 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || ||| || | || | ||||||||| || ||||| ||||| || | ||| || Sbjct 5316 GATCTTTGCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTT 5257 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| || ||||| |||||| Sbjct 5256 ACCCGTCAGGGTTTTGACGAAAATCTGCATC 5226 >seq48644 Length=2856 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || |||||||| || || || ||| | Sbjct 1834 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 1893 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || | ||||| || ||| | || | || ||||||||||| || Sbjct 1894 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1953 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || || ||| | || | |||||||||||| || || Sbjct 1954 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2013 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || |||||||| ||||| ||||| || |||||| Sbjct 2014 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2061 >seq45117 Length=3449 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || |||||||| || || || ||| | Sbjct 2427 CCACCACGGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCG 2486 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || || | ||||| || ||| | || | || ||||||||||| || Sbjct 2487 AGGGTACGACCGTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 2546 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || || ||| | || | |||||||||||| || || Sbjct 2547 ATGCCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACC 2606 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | ||| || |||||||| ||||| ||||| || |||||| Sbjct 2607 TCTAGGGTTATCGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATC 2654 >seq9434 Length=50679 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTC 45190 || ||||| || || || ||||| |||||||| || || ||| | || ||| || Sbjct 44957 ACCAGATGAAGTGTAGACTCCTTCTGGATATTGTAGTCAGCT-AGTGTACGCCCATCTTC 45015 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| || || || | || | || ||||||||| || || || |||||||||||||| Sbjct 45016 GAGTTGCTTCCCGGCAAAGATGAGTCTTTGCTGGTCAGGTGGGATACCTTCTTTATCTTG 45075 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| |||| || | ||||| ||| |||||| || ||||| | ||||| Sbjct 45076 GATTTTTGCCTTGACATTGTCAATAGTGTCTGAACTCTCGACCTCAAGAGTTATGGTTTT 45135 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| ||||| Sbjct 45136 CCCAGTCAGGGTTTTAACAAAAATCTGCAT 45165 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || ||||| ||||||||||| |||||||| | || | ||| || | ||| Sbjct 45418 ATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCGAGTTG 45477 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | ||||| | |||||||| || || || || || ||||| || ||||| Sbjct 45478 CTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATTTT 45537 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | || | || | || | |||||| || ||| ||||| ||||||| ||||| || | Sbjct 45538 TGCCTTCA-CGTTGTCAATGGTGTCTGAGCTCTCCACTTCCAGAGTAATAGTTTTCCCAG 45596 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || |||||||||||||| Sbjct 45597 TAAGGGTCTTGACAAAAATTTGCAT 45621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449813278396240