Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq5412 376 3e-99 seq8546 259 6e-64 seq29420 208 9e-49 seq25216 196 6e-45 seq59 188 9e-43 seq3927 141 1e-28 seq2610 98.7 1e-15 seq8630 91.5 2e-13 >seq5412 Length=31808 Score = 376 bits (416), Expect = 3e-99 Identities = 500/692 (72%), Gaps = 8/692 (1%) Strand=Plus/Plus Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 ||||||||||| | || ||||| || || |||||||| ||||| || || |||||||| Sbjct 14599 TATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTCC 14658 Query 7844 TCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGA 7903 |||||||| | | | ||||| | || || ||| || |||||||| | | || | Sbjct 14659 TCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 14718 Query 7904 GAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG 7963 |||||||| | ||||||||| ||||| || | || | || |||||||| Sbjct 14719 CTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGCT 14772 Query 7964 ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATG 8023 ||||| | |||||| || |||||||| |||||||||||||| || ||||| |||| |||| Sbjct 14773 ACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATG 14832 Query 8024 TAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAA 8083 ||||||| |||||||| || || ||||||||| | | ||| || |||| ||| | Sbjct 14833 AAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAATT 14892 Query 8084 GGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATC 8143 || |||| | ||| ||||||| || | ||||| || || || || || ||| ||| Sbjct 14893 GGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAATC 14952 Query 8144 CAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATA 8203 || || |||||||| |||||| || |||||||||||||||||||||||| | | | Sbjct 14953 CAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACA 15012 Query 8204 CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCA 8263 || | | |||||| || | || || | | |||||||| ||||| | ||| |||||| Sbjct 15013 CCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATCA 15072 Query 8264 AGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACA 8323 | ||| || |||||||| || ||||| ||||| | ||| ||||| | ||| ||| | Sbjct 15073 ACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAATA 15132 Query 8324 ACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATG 8383 | ||||||||||| || ||||| || || | || || ||| || |||||||| || Sbjct 15133 ATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAATA 15192 Query 8384 CCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGC 8442 || ||||| || || ||||||||||| | ||| || | || || || || | || | Sbjct 15193 CCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGAT-GTTGCGGT 15251 Query 8443 GAGCAGCGTAGGAATCATCAGGACACCGAACC 8474 | | ||||||||||||| || || |||| Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 7535 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGA 7594 || || ||||| ||||||||||| |||||||||| || ||||| |||||||| ||||| Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520 Query 7595 CCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATG 7654 || ||||| | | || ||||| || || | ||||||||||||| ||||| | Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA 14580 Query 7655 GACTGGTTGAAGTTGA 7670 || |||||||| |||| Sbjct 14581 GATTGGTTGAAATTGA 14596 >seq8546 Length=31398 Score = 259 bits (286), Expect = 6e-64 Identities = 324/444 (73%), Gaps = 4/444 (1%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||| ||||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 ||| ||||| | | || ||||| || ||||||||||||| ||||| | Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAATAATT----ACACGACCTTGACTATCAACTAC 12880 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| ||||| ||||| ||| | |||||||| || |||| ||| | || ||| Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 ||||| || || || || ||||| || | | |||||| || | ||| | || | ||| Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 ||| ||| ||||||||||| | || ||||| || || |||||||| || || || | Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 || || || |||||||| || | ||||| | || ||| | | || |||||||| Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | | || | ||||||||| | ||||||||||| ||||||| | || || || || Sbjct 13121 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAA 13180 Query 7954 GACACCAGCGACGCCCAGCATGTG 7977 |||||||| ||||| | |||||| Sbjct 13181 TACACCAGCTACGCCTAACATGTG 13204 >seq29420 Length=7120 Score = 208 bits (230), Expect = 9e-49 Identities = 262/360 (73%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 8048 AGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGAT 8107 ||||||||| | ||||| || |||||||| | || |||| | ||| | || || Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715 Query 8108 GCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAA 8167 || || ||||| ||| | || || || ||| ||||| || |||||||| |||||| || Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655 Query 8168 GAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACG 8227 |||||||||||||||||||||||| | | ||| | | |||||| || | | Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595 Query 8228 AGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGA 8287 || | |||||||||| ||||| | ||| ||||||| ||| || |||||||| || ||| Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535 Query 8288 TAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTG 8347 || ||||| | ||| ||||| ||||| |||| || |||||||||| || ||||| Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475 Query 8348 CCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCA 8407 || | | || || |||| || |||||||| || || ||||| || || ||||||||| Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGCA 3415 >seq25216 Length=8180 Score = 196 bits (216), Expect = 6e-45 Identities = 194/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 7907 GAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACG 7966 |||||||| | ||||||||||| |||||||| || || || || || |||||| | ||| Sbjct 7003 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACG 7062 Query 7967 CCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAG 8026 || | |||||| || |||||||| |||||||||||||| | ||||| |||| |||| || Sbjct 7063 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAG 7122 Query 8027 TTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGA 8086 ||||| |||||||| || || ||||||||| | ||||| || |||||||| | || Sbjct 7123 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 7182 Query 8087 TAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAG 8146 |||| | ||| ||||||| || || ||||| ||||| || || || | | ||||| Sbjct 7183 TAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAA 7242 Query 8147 GGACGCATACC 8157 || |||||||| Sbjct 7243 GGGCGCATACC 7253 >seq59 Length=339703 Score = 188 bits (208), Expect = 9e-43 Identities = 196/257 (76%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 7811 CCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTC 7870 || |||| ||| || || || || |||||||| |||||||| ||| | ||||| | || Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506 Query 7871 TGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATC 7930 || ||| || |||||||| | || || | |||||||| | ||||||||||| Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446 Query 7931 GCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATC 7990 ||||||| || || || || || |||||||| |||| | |||||| || |||||||| Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386 Query 7991 AGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGA 8050 |||||||||||||| || ||||| |||| |||| ||||||| |||||||| | || ||| Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326 Query 8051 GGCATAGCGTCAGAGAA 8067 |||||| | ||||| || Sbjct 52325 GGCATACCATCAGAAAA 52309 >seq3927 Length=49767 Score = 141 bits (156), Expect = 1e-28 Identities = 182/247 (74%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | ||| || ||||| | ||| |||||||| Sbjct 26250 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCG-AATATAGATGCTACACCAAAA 26192 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| ||||| || || ||||| || ||||| || || ||||| Sbjct 26191 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGAAACACCGAAACAAAA 26132 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 | ||||| |||||| | || || |||||||| || || || | | || ||| || || Sbjct 26131 ATGGCAATTGGACCAAATAATGCTATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 26073 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| || |||| || || ||||| || ||||| Sbjct 26072 AAGTTCAAATTGACGTAACATAAAACCTATTAGTCCAAAAGCGCCATGGAGAGCAACAAA 26013 Query 6982 AGGCCAT 6988 || |||| Sbjct 26012 AGTCCAT 26006 >seq2610 Length=55653 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 10205 AGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACAC 10264 |||| |||||| | ||||||| | | | || ||||||||| | || || || | || | Sbjct 39500 AGTAGAGTTCACCTTCTTTGTGAGTATGAATCACACAATCTCCGGTAGGGTACGCGACGC 39441 Query 10265 AGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGAT 10324 | ||||| | | | || || || ||||||||||||||||| || || || | Sbjct 39440 AAGTCAGTACGTAGCCCTGATTAATTTGGTCATCATCAAGGAAGGACCCGTCTGACTGGT 39381 Query 10325 CTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGT 10384 | || | || || || || || || ||||| | ||||| ||||||||||||||||||| Sbjct 39380 CGACTGATCCAGAAATCAGCTTCCCAGCACAGGTTGAACAAGCACCAGCTCGGCACGAGT 39321 Query 10385 AGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAG 10438 | || || | ||| || | ||||| | |||| ||||| ||| |||| Sbjct 39320 ATGGAAGATCCAAGCCAGCATTCTCAGCTGAGTCCAAGATGTATACATCATCAG 39267 >seq8630 Length=23577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792 ||||| || || | ||||| || | ||||| || |||||||| ||| ||||||||| Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569 Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGC-AACGATGTTGTAGGTCTCTTCTTCTTGACC 7851 || | |||||||| || || |||||||| ||||| || || || || || |||||||| Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509 Query 7852 GAACTTATAACC 7863 || || ||||| Sbjct 7508 AAATTTGTAACC 7497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619110652003360