Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 376 3e-99
seq8546 259 6e-64
seq29420 208 9e-49
seq25216 196 6e-45
seq59 188 9e-43
seq3927 141 1e-28
seq2610 98.7 1e-15
seq8630 91.5 2e-13
>seq5412
Length=31808
Score = 376 bits (416), Expect = 3e-99
Identities = 500/692 (72%), Gaps = 8/692 (1%)
Strand=Plus/Plus
Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843
||||||||||| | || ||||| || || |||||||| ||||| || || ||||||||
Sbjct 14599 TATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTCTCTTCC 14658
Query 7844 TCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGA 7903
|||||||| | | | ||||| | || || ||| || |||||||| | | || |
Sbjct 14659 TCTTGACCAAGCCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 14718
Query 7904 GAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG 7963
|||||||| | ||||||||| ||||| || | || | || ||||||||
Sbjct 14719 CTCGAGGTTACCAAAGAACCATGC------CTGAATAGGTAGCCGTCGAATACACCAGCT 14772
Query 7964 ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATG 8023
||||| | |||||| || |||||||| |||||||||||||| || ||||| |||| ||||
Sbjct 14773 ACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATG 14832
Query 8024 TAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAA 8083
||||||| |||||||| || || ||||||||| | | ||| || |||| ||| |
Sbjct 14833 AAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATTAGAAAAGCTTCCTTAACCAATT 14892
Query 8084 GGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATC 8143
|| |||| | ||| ||||||| || | ||||| || || || || || ||| |||
Sbjct 14893 GGGTAGATCAAGAAAACAGCAGTAGCAGTCGCAACAGGGGCTGAATACGCAACAACAATC 14952
Query 8144 CAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATA 8203
|| || |||||||| |||||| || |||||||||||||||||||||||| | | |
Sbjct 14953 CAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACA 15012
Query 8204 CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCA 8263
|| | | |||||| || | || || | | |||||||| ||||| | ||| ||||||
Sbjct 15013 CCAAGTAAGAAGTGAAAAACAATTAGCTCATATGGACCACCATTGTATAACCATTCATCA 15072
Query 8264 AGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACA 8323
| ||| || |||||||| || ||||| ||||| | ||| ||||| | ||| ||| |
Sbjct 15073 ACAGATGCAGCTTCCCATATTGGATAAAAGTGCAAACCTATAGCAGCAAAAGTCTGAATA 15132
Query 8324 ACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATG 8383
| ||||||||||| || ||||| || || | || || ||| || |||||||| ||
Sbjct 15133 ATGGCACCAGAGATAATATTGTTTCCGTAAAGAAGAGATCCAAAAACAGGTTCACGAATA 15192
Query 8384 CCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAATAGCAGCAGC 8442
|| ||||| || || ||||||||||| | ||| || | || || || || | || |
Sbjct 15193 CCATCAATATCTACCGGAGGAGCAGCAATGAAGGCTATAATAAATACGGAT-GTTGCGGT 15251
Query 8443 GAGCAGCGTAGGAATCATCAGGACACCGAACC 8474
| | ||||||||||||| || || ||||
Sbjct 15252 CAATAAGGTAGGAATCATCAAAACGCCAAACC 15283
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 7535 GCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGA 7594
|| || ||||| ||||||||||| |||||||||| || ||||| |||||||| |||||
Sbjct 14461 GCTGCTAGGTCGAGAGGGAAGTTAGGAGCATTACGTTCATGCATAACTTCCATACCAAGG 14520
Query 7595 CCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATG 7654
|| ||||| | | || ||||| || || | ||||||||||||| ||||| |
Sbjct 14521 TTAGTGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA 14580
Query 7655 GACTGGTTGAAGTTGA 7670
|| |||||||| ||||
Sbjct 14581 GATTGGTTGAAATTGA 14596
>seq8546
Length=31398
Score = 259 bits (286), Expect = 6e-64
Identities = 324/444 (73%), Gaps = 4/444 (1%)
Strand=Plus/Plus
Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593
|||||| ||||| ||| ||||||| ||||||||||| || ||||| |||||||| |||||
Sbjct 12765 AGCAGCTAGGTCTAGATGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 12824
Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653
||| ||||| | | || ||||| || ||||||||||||| ||||| |
Sbjct 12825 GTTAGCGCGGTTAATAATATCGGCCCAATAATT----ACACGACCTTGACTATCAACTAC 12880
Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713
|| |||||||| ||||| ||||| ||| | |||||||| || |||| ||| | || |||
Sbjct 12881 AGATTGGTTGAAATTGAAGCCGTTTAGGATAAATGCCATAGTACTAATACCTAAAGTAGT 12940
Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773
||||| || || || || ||||| || | | |||||| || | ||| | || | |||
Sbjct 12941 AAACCATATACCTACTACAGGCCAAGCAACTAAGAAGAAATGTAAAGAATGAGAATCGTT 13000
Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833
||| ||| ||||||||||| | || ||||| || || |||||||| || || || |
Sbjct 13001 GAAACTAGCATATTGGAAGATGAATCGGCCAAAATAACCATGAGCAGCTACAATATTCTT 13060
Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893
|| || || |||||||| || | ||||| | || ||| | | || ||||||||
Sbjct 13061 AGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTTATTTTCTGTGGTTTC 13120
Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953
| | || | ||||||||| | ||||||||||| ||||||| | || || || ||
Sbjct 13121 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAACACTGAATATGGAGCCGCCGAA 13180
Query 7954 GACACCAGCGACGCCCAGCATGTG 7977
|||||||| ||||| | ||||||
Sbjct 13181 TACACCAGCTACGCCTAACATGTG 13204
>seq29420
Length=7120
Score = 208 bits (230), Expect = 9e-49
Identities = 262/360 (73%), Gaps = 0/360 (0%)
Strand=Plus/Minus
Query 8048 AGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGAT 8107
||||||||| | ||||| || |||||||| | || |||| | ||| | || ||
Sbjct 3774 AGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAATAGTAGTA 3715
Query 8108 GCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAA 8167
|| || ||||| ||| | || || || ||| ||||| || |||||||| |||||| ||
Sbjct 3714 GCAGCCGCAACAGGAACTGAATACGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAA 3655
Query 8168 GAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACG 8227
|||||||||||||||||||||||| | | ||| | | |||||| || | |
Sbjct 3654 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGCAAAACATTT 3595
Query 8228 AGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGA 8287
|| | |||||||||| ||||| | ||| ||||||| ||| || |||||||| || |||
Sbjct 3594 AGCTCATAAGGACCACCATTGTATAACCATTCATCAACAGATGCAGCTTCCCATATTGGA 3535
Query 8288 TAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTG 8347
|| ||||| | ||| ||||| ||||| |||| || |||||||||| || |||||
Sbjct 3534 TAAAAGTGCAAACCTATAGCAGCAGAAGTCGGAATAATGTCACCAGAGATAATATTGTTT 3475
Query 8348 CCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCA 8407
|| | | || || |||| || |||||||| || || ||||| || || |||||||||
Sbjct 3474 CCGTGAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGAGCA 3415
>seq25216
Length=8180
Score = 196 bits (216), Expect = 6e-45
Identities = 194/251 (77%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 7907 GAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACG 7966
|||||||| | ||||||||||| |||||||| || || || || || |||||| | |||
Sbjct 7003 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCATCTACG 7062
Query 7967 CCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAG 8026
|| | |||||| || |||||||| |||||||||||||| | ||||| |||| |||| ||
Sbjct 7063 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGACTGGAATACAATCATGAAG 7122
Query 8027 TTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGA 8086
||||| |||||||| || || ||||||||| | ||||| || |||||||| | ||
Sbjct 7123 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGG 7182
Query 8087 TAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAG 8146
|||| | ||| ||||||| || || ||||| ||||| || || || | | |||||
Sbjct 7183 TAGATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCTGAATACGCAATAGCAATCCAA 7242
Query 8147 GGACGCATACC 8157
|| ||||||||
Sbjct 7243 GGGCGCATACC 7253
>seq59
Length=339703
Score = 188 bits (208), Expect = 9e-43
Identities = 196/257 (76%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 7811 CCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTC 7870
|| |||| ||| || || || || |||||||| |||||||| ||| | ||||| | ||
Sbjct 52565 CCATGAGTAGCTACAATATTATAAGTCTCTTCCTCTTGACCAAACCTGTAACCTTCATTA 52506
Query 7871 TGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATC 7930
|| ||| || |||||||| | || || | |||||||| | |||||||||||
Sbjct 52505 GTAGATTCATTTTCTGTGGTTTCCCTAATCAAACTCGAGGTTACCAAAGAACCATGCATA 52446
Query 7931 GCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATC 7990
||||||| || || || || || |||||||| |||| | |||||| || ||||||||
Sbjct 52445 ACACTGAATAGGGAGCCGCCGAATACACCAGCTACGCTTAACATGTGAAATGGGTGCATA 52386
Query 7991 AGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGA 8050
|||||||||||||| || ||||| |||| |||| ||||||| |||||||| | || |||
Sbjct 52385 AGGATGTTGTGCTCAGCATGGAATACAATCATGAAGTTGAAAGTACCAGAAACTCCTAGA 52326
Query 8051 GGCATAGCGTCAGAGAA 8067
|||||| | ||||| ||
Sbjct 52325 GGCATACCATCAGAAAA 52309
>seq3927
Length=49767
Score = 141 bits (156), Expect = 1e-28
Identities = 182/247 (74%), Gaps = 3/247 (1%)
Strand=Plus/Minus
Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802
||||| || || || || || | ||||| | ||| || ||||| | ||| ||||||||
Sbjct 26250 GTCCAATTATGAAACCCTTGAAAAAAGAGGATGAATCG-AATATAGATGCTACACCAAAA 26192
Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862
|||||||||||||||| ||||| || || ||||| || ||||| || || |||||
Sbjct 26191 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGAAACACCGAAACAAAA 26132
Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921
| ||||| |||||| | || || |||||||| || || || | | || ||| || ||
Sbjct 26131 ATGGCAATTGGACCAAATAATGCTATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 26073
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
| ||||| || || | ||| |||||||| || |||| || || ||||| || |||||
Sbjct 26072 AAGTTCAAATTGACGTAACATAAAACCTATTAGTCCAAAAGCGCCATGGAGAGCAACAAA 26013
Query 6982 AGGCCAT 6988
|| ||||
Sbjct 26012 AGTCCAT 26006
>seq2610
Length=55653
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 10205 AGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACAC 10264
|||| |||||| | ||||||| | | | || ||||||||| | || || || | || |
Sbjct 39500 AGTAGAGTTCACCTTCTTTGTGAGTATGAATCACACAATCTCCGGTAGGGTACGCGACGC 39441
Query 10265 AGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGAT 10324
| ||||| | | | || || || ||||||||||||||||| || || || |
Sbjct 39440 AAGTCAGTACGTAGCCCTGATTAATTTGGTCATCATCAAGGAAGGACCCGTCTGACTGGT 39381
Query 10325 CTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGT 10384
| || | || || || || || || ||||| | ||||| |||||||||||||||||||
Sbjct 39380 CGACTGATCCAGAAATCAGCTTCCCAGCACAGGTTGAACAAGCACCAGCTCGGCACGAGT 39321
Query 10385 AGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAG 10438
| || || | ||| || | ||||| | |||| ||||| ||| ||||
Sbjct 39320 ATGGAAGATCCAAGCCAGCATTCTCAGCTGAGTCCAAGATGTATACATCATCAG 39267
>seq8630
Length=23577
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/132 (76%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792
||||| || || | ||||| || | ||||| || |||||||| ||| |||||||||
Sbjct 7628 GGCCAAGCGGCTAATAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAG 7569
Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGC-AACGATGTTGTAGGTCTCTTCTTCTTGACC 7851
|| | |||||||| || || |||||||| ||||| || || || || || ||||||||
Sbjct 7568 ATGAATCGACCAAAATAACCATGAGCAGCGTACGATATTCTAAGTTTCCTCCTCTTGACC 7509
Query 7852 GAACTTATAACC 7863
|| || |||||
Sbjct 7508 AAATTTGTAACC 7497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 619110652003360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |