Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4197 91.5 2e-13 seq2652 89.7 6e-13 seq270 87.8 2e-12 seq2786 86.0 8e-12 >seq4197 Length=36674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| |||||||| | || ||||||||| || || ||||| || || ||||| Sbjct 23441 CCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCTCGCTTT 23500 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || ||||| || || |||||||||||||| || || || || || || Sbjct 23501 TTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAGGCAAAA 23560 Query 127658 GCAAATAGACGCTCGGCAAAGGA 127680 |||| || ||||| || ||||| Sbjct 23561 GCAACTATGCGCTCAGCGAAGGA 23583 >seq2652 Length=45542 Score = 89.7 bits (98), Expect = 6e-13 Identities = 214/321 (67%), Gaps = 12/321 (4%) Strand=Plus/Minus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || | ||||| || |||| | | | ||| ||||||||||| ||||| Sbjct 43258 GTTTGTGGCGGCCAAGACAATGACTCCCGAGTTGCCAGAGAAACCATCCATCTCGGTCAA 43199 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869 || || ||||| || || || | |||||||| || | ||| || || | | Sbjct 43198 CAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCCGCCCC--CCAGGCCGGCGCCTCTC 43141 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACG 12925 ||| | || || || ||||| || |||||||| || || || || ||| | || Sbjct 43140 TGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGCAGGGGGCCTTGCTCTT---- 43085 Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| ||||| | ||| | ||| ||| ||| || || || || |||| |||||| || Sbjct 43084 GGCCTTCTCAAACAGATCCCTCACCCTCGAGGCCCCAACCCCTACGAACAGCTCCACGAA 43025 Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | ||| | || || |||||| || || ||| ||||| | || | || || Sbjct 43024 CTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCCCCCGCCACTGCCCTCGCCAG 42965 Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066 || |||||||||||||| || Sbjct 42964 CAGCGTCTTCCCCGTCCCAGG 42944 >seq270 Length=105985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| | || ||||| | ||| || || || || |||||| || || Sbjct 91794 AGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCC 91853 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| ||||| || || || | |||||| | || || || || ||||||||||| Sbjct 91854 TGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGAT 91913 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 || ||||| || ||||| || | | |||||||| ||||| ||| | ||| | Sbjct 91914 GCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGA---GGAATCGAT 91970 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTT 127725 ||| || |||||||| ||||| || Sbjct 91971 CCATCGCAAGGCCCACTGCGCCTTCTT 91997 >seq2786 Length=62223 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 ||||| |||||||| |||||||| ||||| || | |||||||| | |||||||||| | Sbjct 37689 TCGAATCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCT 37630 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | || | || | ||| |||| || || |||||||| |||| || || || Sbjct 37629 CCACCAACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATG 37570 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || || ||| || || | || | || || ||||| |||||| ||||| Sbjct 37569 CAAGGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCA 37510 Query 12969 ACAAACATCTCCACAAA 12985 ||||||||||| ||||| Sbjct 37509 ACAAACATCTCAACAAA 37493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610534803629040