Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 91.5 2e-13
seq2652 89.7 6e-13
seq270 87.8 2e-12
seq2786 86.0 8e-12
>seq4197
Length=36674
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597
|| ||||| |||||||| | || ||||||||| || || ||||| || || |||||
Sbjct 23441 CCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCTCGCTTT 23500
Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657
|| | ||| || ||||| || || |||||||||||||| || || || || || ||
Sbjct 23501 TTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAGGCAAAA 23560
Query 127658 GCAAATAGACGCTCGGCAAAGGA 127680
|||| || ||||| || |||||
Sbjct 23561 GCAACTATGCGCTCAGCGAAGGA 23583
>seq2652
Length=45542
Score = 89.7 bits (98), Expect = 6e-13
Identities = 214/321 (67%), Gaps = 12/321 (4%)
Strand=Plus/Minus
Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811
||| || || || | ||||| || |||| | | | ||| ||||||||||| |||||
Sbjct 43258 GTTTGTGGCGGCCAAGACAATGACTCCCGAGTTGCCAGAGAAACCATCCATCTCGGTCAA 43199
Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869
|| || ||||| || || || | |||||||| || | ||| || || | |
Sbjct 43198 CAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCCGCCCC--CCAGGCCGGCGCCTCTC 43141
Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGG----TTGATTTTCACG 12925
||| | || || || ||||| || |||||||| || || || || ||| | ||
Sbjct 43140 TGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGCAGGGGGCCTTGCTCTT---- 43085
Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985
||| ||||| | ||| | ||| ||| ||| || || || || |||| |||||| ||
Sbjct 43084 GGCCTTCTCAAACAGATCCCTCACCCTCGAGGCCCCAACCCCTACGAACAGCTCCACGAA 43025
Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045
| | ||| | || || |||||| || || ||| ||||| | || | || ||
Sbjct 43024 CTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCCCCCGCCACTGCCCTCGCCAG 42965
Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066
|| |||||||||||||| ||
Sbjct 42964 CAGCGTCTTCCCCGTCCCAGG 42944
>seq270
Length=105985
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/207 (70%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| | || ||||| | ||| || || || || |||||| || ||
Sbjct 91794 AGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCC 91853
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
|||||| ||||| || || || | |||||| | || || || || |||||||||||
Sbjct 91854 TGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGAT 91913
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698
|| ||||| || ||||| || | | |||||||| ||||| ||| | ||| |
Sbjct 91914 GCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGATTCGGA---GGAATCGAT 91970
Query 127699 CCACTTCATCGCCCACTGTGCCTTTTT 127725
||| || |||||||| ||||| ||
Sbjct 91971 CCATCGCAAGGCCCACTGCGCCTTCTT 91997
>seq2786
Length=62223
Score = 86.0 bits (94), Expect = 8e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848
||||| |||||||| |||||||| ||||| || | |||||||| | |||||||||| |
Sbjct 37689 TCGAATCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCT 37630
Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908
| | || | || | ||| |||| || || |||||||| |||| || || ||
Sbjct 37629 CCACCAACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATG 37570
Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968
|| || ||| || || | || | || || ||||| |||||| |||||
Sbjct 37569 CAAGGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCA 37510
Query 12969 ACAAACATCTCCACAAA 12985
||||||||||| |||||
Sbjct 37509 ACAAACATCTCAACAAA 37493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610534803629040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |