Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq48644 116 4e-21
seq45117 116 4e-21
seq184 95.1 1e-14
seq10588 93.3 5e-14
seq1982 89.7 6e-13
seq9434 86.0 7e-12
seq4209 82.4 9e-11
>seq48644
Length=2856
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| || | ||| ||||||||| || |||||||||| || || || |
Sbjct 1845 ACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACC 1904
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||| ||||||||||| || | ||||||||||| | || | || |||||
Sbjct 1905 GTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTT 1964
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||||| || | | | | |||||| ||||| || || | || ||
Sbjct 1965 GTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTAT 2024
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| || || || || ||||| |||||||| ||||| ||
Sbjct 2025 CGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063
>seq45117
Length=3449
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| || | ||| ||||||||| || |||||||||| || || || |
Sbjct 2438 ACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACC 2497
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || ||||| ||||||||||| || | ||||||||||| | || | || |||||
Sbjct 2498 GTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTT 2557
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||||| || | | | | |||||| ||||| || || | || ||
Sbjct 2558 GTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTAT 2617
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| || || || || ||||| |||||||| ||||| ||
Sbjct 2618 CGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656
>seq184
Length=120086
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/197 (71%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||||||||| |||| || || || | || || |||||||| ||||||||
Sbjct 5417 TCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAG 5358
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | || |||||||| | || | | ||||||||| |||||| ||| | |
Sbjct 5357 ATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTG 5298
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | |||||| ||||| || || | || || || || |||||||| ||||| ||
Sbjct 5297 TCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACG 5238
Query 46583 AAGATTTGCAT-TTTGC 46598
|| || ||||| |||||
Sbjct 5237 AAAATCTGCATCTTTGC 5221
>seq10588
Length=20159
Score = 93.3 bits (102), Expect = 5e-14
Identities = 155/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||| ||||| | || |||||| ||||||||||| || | ||| || | |
Sbjct 1264 ACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCC 1323
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| ||||||||||| || || || || | | ||||||||| | || | | ||||||
Sbjct 1324 ATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTT 1383
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553
|||| |||||| ||| | ||| | | | ||||| |||| || || |||| |
Sbjct 1384 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTC---TCAACCTCCAAGG 1439
Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| || || || || ||||| || |||||||| |||||
Sbjct 1440 TGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479
Score = 91.5 bits (100), Expect = 2e-13
Identities = 138/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || |||||||| || | ||||| || | || || |||||||| || || ||
Sbjct 1060 CTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAA 1119
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||| ||||| | || | | ||||||||| |||||| ||| | |
Sbjct 1120 GATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATT 1179
Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | || || |||| || || |||| |||||||| ||||| |||| || ||
Sbjct 1180 ATCAATAGTATCAGAGCTC---TCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTT 1236
Query 46579 AACAAAGATTTGCAT 46593
||||||||| |||||
Sbjct 1237 AACAAAGATCTGCAT 1251
>seq1982
Length=56187
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| ||||| || |||| ||||||||||| ||||||||
Sbjct 32381 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAG 32322
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501
|| | ||||||||||| | || | | ||||||||||
Sbjct 32321 ATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 32283
Score = 82.4 bits (90), Expect = 9e-11
Identities = 114/160 (71%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496
|||| ||||||||||| |||||||| || | ||||||||||| | || | | |||||
Sbjct 32275 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 32216
Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
||||| |||||| ||| | | | | |||||| || || || || | || |
Sbjct 32215 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTA 32156
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
| || || ||||| || ||||| || ||||| ||||| ||
Sbjct 32155 TCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATCTT 32116
>seq9434
Length=50679
Score = 86.0 bits (94), Expect = 7e-12
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||| | ||| |||||||||||| || || || | ||||| | | || |||
Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| || || || ||||| | ||||||||| | || | | |||||| ||| |
Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560
|| || ||| | ||| | | | ||||| |||| ||||| |||| || || ||
Sbjct 45533 ATTTTTGCCTTCA-CGTTGTCAATGGTGTCTGAGCTC---TCCACTTCCAGAGTAATAGT 45588
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || || ||||| ||||||||
Sbjct 45589 TTTCCCAGTAAGGGTCTTGACAAAAATTTGCAT 45621
>seq4209
Length=73032
Score = 82.4 bits (90), Expect = 9e-11
Identities = 146/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| || ||||| | || || | | || |||
Sbjct 25 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCCTCG 84
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| || || || | ||||||||||| | || | | |||||||| |
Sbjct 85 AGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGG 144
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561
||||| ||||| | | | ||||| |||| || || || | || |||||
Sbjct 145 ATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTC---TCAACCTCTAGGGTTATGGTC 201
Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| ||||| |||||||| |||||
Sbjct 202 TTTCCGGTCAATGTTTTCACAAAGATCTGCAT 233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562499862344880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |