Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq48644 116 4e-21 seq45117 116 4e-21 seq184 95.1 1e-14 seq10588 93.3 5e-14 seq1982 89.7 6e-13 seq9434 86.0 7e-12 seq4209 82.4 9e-11 >seq48644 Length=2856 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | ||| ||||||||| || |||||||||| || || || | Sbjct 1845 ACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACC 1904 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||| ||||||||||| || | ||||||||||| | || | || ||||| Sbjct 1905 GTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTT 1964 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||||| || | | | | |||||| ||||| || || | || || Sbjct 1965 GTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTAT 2024 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || || || ||||| |||||||| ||||| || Sbjct 2025 CGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2063 >seq45117 Length=3449 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | ||| ||||||||| || |||||||||| || || || | Sbjct 2438 ACGGAGCACCAGGTGGAGGGTAGACTCCTTTTGAATGTTGTAGTCGGCGAGGGTACGACC 2497 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||| ||||||||||| || | ||||||||||| | || | || ||||| Sbjct 2498 GTCCTCTAGCTGTTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTT 2557 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||||| || | | | | |||||| ||||| || || | || || Sbjct 2558 GTCCTGGATCTTCGCTTTCACATTGTCGATGGTGTCGGAAGATTCAACCTCTAGGGTTAT 2617 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || || || ||||| |||||||| ||||| || Sbjct 2618 CGTCTTCCCGGTTAGTGTTTTCACAAAGATCTGCATCTT 2656 >seq184 Length=120086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| |||| || || || | || || |||||||| |||||||| Sbjct 5417 TCCTTCTGGATATTGTAATCGGCGAGGGTTCGGCCATCCTCTAGCTGCTTACCGGCGAAG 5358 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | | ||||||||| |||||| ||| | | Sbjct 5357 ATTAGCCGTTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTG 5298 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| ||||| || || | || || || || |||||||| ||||| || Sbjct 5297 TCGATGGTGTCGGAGGATTCGACCTCGAGGGTTATCGTCTTACCCGTCAGGGTTTTGACG 5238 Query 46583 AAGATTTGCAT-TTTGC 46598 || || ||||| ||||| Sbjct 5237 AAAATCTGCATCTTTGC 5221 >seq10588 Length=20159 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| ||||||||||| || | ||| || | | Sbjct 1264 ACGAAGCACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCTAGGGTTCTTCC 1323 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| || || || || | | ||||||||| | || | | |||||| Sbjct 1324 ATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGGGGAATACCCTCCTT 1383 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 |||| |||||| ||| | ||| | | | ||||| |||| || || |||| | Sbjct 1384 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTC---TCAACCTCCAAGG 1439 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || || ||||| || |||||||| ||||| Sbjct 1440 TGATAGTCTTTCCAGTGAGCGTCTTGACAAAGATCTGCAT 1479 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||| || | ||||| || | || || |||||||| || || || Sbjct 1060 CTCCTTCTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGCTGCTTTCCAGCAAA 1119 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||| | || | | ||||||||| |||||| ||| | | Sbjct 1120 GATCAAACGCTGTTGGTCTGGAGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTCACATT 1179 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || |||| |||||||| ||||| |||| || || Sbjct 1180 ATCAATAGTATCAGAGCTC---TCAACCTCCAAGGTGATGGTCTTGCCAGTCAATGTCTT 1236 Query 46579 AACAAAGATTTGCAT 46593 ||||||||| ||||| Sbjct 1237 AACAAAGATCTGCAT 1251 >seq1982 Length=56187 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| ||||| || |||| ||||||||||| |||||||| Sbjct 32381 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAG 32322 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || | ||||||||||| | || | | |||||||||| Sbjct 32321 ATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCC 32283 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496 |||| ||||||||||| |||||||| || | ||||||||||| | || | | ||||| Sbjct 32275 CGTCTTCGAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGTGGGATTCCCTCCT 32216 Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||||| |||||| ||| | | | | |||||| || || || || | || | Sbjct 32215 TGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTTA 32156 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || || ||||| || ||||| || ||||| ||||| || Sbjct 32155 TCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCATCTT 32116 >seq9434 Length=50679 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| |||||||||||| || || || | ||||| | | || ||| Sbjct 45413 ACCAAATGAAGTGTTGACTCCTTTTGGATGTTATAATCTGCAAGAGTCCTTCCATCTTCG 45472 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || ||||| | ||||||||| | || | | |||||| ||| | Sbjct 45473 AGTTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGG 45532 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 || || ||| | ||| | | | ||||| |||| ||||| |||| || || || Sbjct 45533 ATTTTTGCCTTCA-CGTTGTCAATGGTGTCTGAGCTC---TCCACTTCCAGAGTAATAGT 45588 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || ||||| |||||||| Sbjct 45589 TTTCCCAGTAAGGGTCTTGACAAAAATTTGCAT 45621 >seq4209 Length=73032 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| || ||||| | || || | | || ||| Sbjct 25 ACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTACCATCCTCG 84 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| || || || | ||||||||||| | || | | |||||||| | Sbjct 85 AGCTGCTTGCCCGCAAAGATGAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGG 144 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||||| | | | ||||| |||| || || || | || ||||| Sbjct 145 ATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTC---TCAACCTCTAGGGTTATGGTC 201 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| ||||| |||||||| ||||| Sbjct 202 TTTCCGGTCAATGTTTTCACAAAGATCTGCAT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562499862344880