Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq270 230 2e-55
seq4197 196 5e-45
seq48644 116 4e-21
seq45117 116 4e-21
seq1982 105 7e-18
seq9434 96.9 3e-15
seq4213 91.5 1e-13
>seq270
Length=105985
Score = 230 bits (254), Expect = 2e-55
Identities = 391/560 (70%), Gaps = 9/560 (2%)
Strand=Plus/Plus
Query 132889 ATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA 132948
||||| |||||||| || || || ||||| ||||| ||||| || || |||||| |||
Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845
Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008
||||| || ||||| || ||||||||||| ||||| |||| |||| ||| || || ||
Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAG 91905
Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG 133068
||||||| ||| || ||| |||||||| || | |||||| |||| || ||| |
Sbjct 91906 AAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAA---GGATTCGGAG 91962
Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128
||||||| |||| ||||| | ||||| | | ||||| || || || || ||
Sbjct 91963 GAATCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATT 92022
Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAG-GTGTCGATGAGGGTCGA 133187
|||| || | ||| | ||||| || ||| || | ||| || | ||||||
Sbjct 92023 GCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCG-AATTAGCGTTTGAATGAGGAGGCT 92081
Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247
||||| || || || | |||||| | ||||| || || || || ||| || |||||
Sbjct 92082 GTACATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTC 92141
Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307
| ||||| | || | ||| | || | || || ||| ||||| ||||||
Sbjct 92142 GGAGACCTGGATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGA 92201
Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAG--CG 133364
||||||||| ||||| || ||||| ||||||||| ||||| || ||| ||
Sbjct 92202 GGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTC 92261
Query 133365 CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424
|||||||| || | || | | || || ||||||||| ||||||| || || || ||
Sbjct 92262 CTCCCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTC 92321
Query 133425 GGCTTTTTTGTACATACTCC 133444
|||||| |||||||| ||||
Sbjct 92322 GGCTTTCTTGTACAT-CTCC 92340
>seq4197
Length=36674
Score = 196 bits (216), Expect = 5e-45
Identities = 395/571 (69%), Gaps = 24/571 (4%)
Strand=Plus/Plus
Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954
||||| || ||||| |||||||| ||||| | ||| || | ||||| ||| || |
Sbjct 23420 CAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGT 23479
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|| ||||| || || || ||||| ||||||||||| ||| ||| || || || ||||||
Sbjct 23480 CCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAG 23539
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| || || ||| || ||||| || | |||||| |||| || |||| | |
Sbjct 23540 ATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAA---GGATTCTGCGGAATCA 23596
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTT--TGACGCACGGCATCGTTTCGATGGCGT 133132
|||||||| |||||||| ||||| |||||| |||| || | || ||||||||||
Sbjct 23597 ATCCAGCGGAGCGCCCAGTCGGC--TTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654
Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTC--GATGAGGGTCGAATA 133190
|| | ||| | ||||| |||| || | ||| || || || || | ||
Sbjct 23655 GGAAGAGCCGGTGCTTCTCGGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTG--TA 23712
Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250
|||||| ||||| | ||||| || ||||| || |||||||| ||| || ||||||
Sbjct 23713 CATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGA 23772
Query 133251 CACCTGCA-CTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309
||||| | || ||| | ||| | | | | ||||| ||| ||||| |||||| ||
Sbjct 23773 AACCTGGATCTCCTTCA-TGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGG 23831
Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAGCG---- 133364
| ||||| ||||| || || || ||| || || ||| | | ||| || |
Sbjct 23832 CTGCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTT--AGGGTTTC 23889
Query 133365 CTCCCAGTCGCGCGTGTCCTTG-GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423
|||||| | || | | |||| || ||||| ||||||||| ||||||| ||||| || |
Sbjct 23890 CTCCCAATGACG-GAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTT 23948
Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGA 133454
|||| || || ||||| |||| ||| | |||
Sbjct 23949 CGGCCTTCTTATACAT-CTCC-CATATGCGA 23977
>seq48644
Length=2856
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || ||||| || || || || || || ||| | || || || |
Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | | | |||| || |||| ||||| || || || || | |||
Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | ||| ||||||||||| || |||| || |||||| |||||||
Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||||| | || || || ||||||| |||
Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCTCCGT 1845
>seq45117
Length=3449
Score = 116 bits (128), Expect = 4e-21
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || ||||| || || || || || || ||| | || || || |
Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | | | |||| || |||| ||||| || || || || | |||
Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | ||| ||||||||||| || |||| || |||||| |||||||
Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||||| | || || || ||||||| |||
Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCTCCGT 2438
>seq1982
Length=56187
Score = 105 bits (116), Expect = 7e-18
Identities = 97/123 (79%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| |||||||| || | ||||| ||||| ||||| | ||| || || ||||| ||
Sbjct 32284 GACAAGGAGGGAATCCCACCGGACCAGCAGCGACTCATCTTCGCCGGGAAGCAGCTCGAA 32343
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || || || ||||||||||||||| |||||| ||||||| || ||||||||
Sbjct 32344 GACGGCCGTACTCTTGCCGACTACAACATCCAGAAGGAATCGACGCTTCACTTGGTGCTT 32403
Query 38457 CGT 38459
|||
Sbjct 32404 CGT 32406
>seq9434
Length=50679
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| ||||||||||| || || || ||||| || ||||| | || |||||| | |
Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| || || | ||||| |||||||||||| | || ||
Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 45730
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| || | || | || ||||| || || || || | | ||||| || || |||
Sbjct 45729 CAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAAC 45670
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||| | || || || |||||||| |||
Sbjct 45669 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGT 45634
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || || ||||| || |||||| |||| || || | |
Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | |||| || |||| ||||| |||||||||||| | |||||
Sbjct 46017 GACACAATTGACAACG-TAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGACCA 45959
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| | || || | || || || || || || || | | ||||| || |||||
Sbjct 45958 ACAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTACAA 45899
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || || || | || || || |||||||| ||| | ||||| ||
Sbjct 45898 TATTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCAGAGGTGG 45851
>seq4213
Length=62956
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/220 (70%), Gaps = 1/220 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCA-CGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
|| ||||| || ||| | ||||| ||| |||| || || || ||| || | || ||| |
Sbjct 19561 AAGATGCAGATCTTCATGAAAACCTTCAACGGGGAAGACGATAACCCTCTAGGTTGAGTC 19620
Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | | | || | || || ||||| |||||||| || | ||
Sbjct 19621 TTCCGACACCATCGATAATGTGAAGGCCAAGATTTAGGACAAGGAGGGAATCCCACCGGA 19680
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
|||||| || ||||| | ||| || || |||| | | ||| | || || ||||||
Sbjct 19681 CCAACAACGACTCATCTTCGCCGGAAAGTAGCTCAAAGGCGACCATACTCTTGCCGACTA 19740
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||||||| |||||| || |||| || |||
Sbjct 19741 CAACATCCAAAAGGAATAGACGCTTCACCTGGTACTTCGT 19780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 497749500296960
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