Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq270 230 2e-55 seq4197 196 5e-45 seq48644 116 4e-21 seq45117 116 4e-21 seq1982 105 7e-18 seq9434 96.9 3e-15 seq4213 91.5 1e-13 >seq270 Length=105985 Score = 230 bits (254), Expect = 2e-55 Identities = 391/560 (70%), Gaps = 9/560 (2%) Strand=Plus/Plus Query 132889 ATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA 132948 ||||| |||||||| || || || ||||| ||||| ||||| || || |||||| ||| Sbjct 91786 ATCAAACAAGCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAG 91845 Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008 ||||| || ||||| || ||||||||||| ||||| |||| |||| ||| || || || Sbjct 91846 GTCAATCCTGGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAG 91905 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG 133068 ||||||| ||| || ||| |||||||| || | |||||| |||| || ||| | Sbjct 91906 AAGAAGATGCCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAA---GGATTCGGAG 91962 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 ||||||| |||| ||||| | ||||| | | ||||| || || || || || Sbjct 91963 GAATCGATCCATCGCAAGGCCCACTGCGCCTTCTTTGTGACGGCAGGGATGGTGTCAATT 92022 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAG-GTGTCGATGAGGGTCGA 133187 |||| || | ||| | ||||| || ||| || | ||| || | |||||| Sbjct 92023 GCGTGGAAGAGGCGGTGCTTCTCGTCGGAGTCCCG-AATTAGCGTTTGAATGAGGAGGCT 92081 Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 ||||| || || || | |||||| | ||||| || || || || ||| || ||||| Sbjct 92082 GTACATCTCAGAATGGATGTTCTCAACTGCGATCTGGAAACCATAGAAGGCGCGAGCCTC 92141 Query 133248 GACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCT 133307 | ||||| | || | ||| | || | || || ||| ||||| |||||| Sbjct 92142 GGAGACCTGGATATCATTCATGAACCTTCCGGCGAGGTTCTCGAGAACGATTCCGTCGGA 92201 Query 133308 GGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAG--CG 133364 ||||||||| ||||| || ||||| ||||||||| ||||| || ||| || Sbjct 92202 GGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAATGTTTCTCGTCGGTGGTTAGAGTTTC 92261 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTC 133424 |||||||| || | || | | || || ||||||||| ||||||| || || || || Sbjct 92262 CTCCCAGTGACGGATATCTTGAGTTAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCTTC 92321 Query 133425 GGCTTTTTTGTACATACTCC 133444 |||||| |||||||| |||| Sbjct 92322 GGCTTTCTTGTACAT-CTCC 92340 >seq4197 Length=36674 Score = 196 bits (216), Expect = 5e-45 Identities = 395/571 (69%), Gaps = 24/571 (4%) Strand=Plus/Plus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 ||||| || ||||| |||||||| ||||| | ||| || | ||||| ||| || | Sbjct 23420 CAAGCGAAATCGCAGTGCAAGCCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGT 23479 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||| || || || ||||| ||||||||||| ||| ||| || || || |||||| Sbjct 23480 CCAGGCATCAGTCCTCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAG 23539 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | || || ||| || ||||| || | |||||| |||| || |||| | | Sbjct 23540 ATACCTTCAACGCAGGCAAAAGCAACTATGCGCTCAGCGAA---GGATTCTGCGGAATCA 23596 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTTTTCTT--TGACGCACGGCATCGTTTCGATGGCGT 133132 |||||||| |||||||| ||||| |||||| |||| || | || |||||||||| Sbjct 23597 ATCCAGCGGAGCGCCCAGTCGGC--TTTCTTGGTGACAGCGGGAACAGTATCGATGGCGT 23654 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTC--GATGAGGGTCGAATA 133190 || | ||| | ||||| |||| || | ||| || || || || | || Sbjct 23655 GGAAGAGCCGGTGCTTCTCGGACGAGTCTCGAATCAGGGTTTCGAGAAGAAGGCTG--TA 23712 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 |||||| ||||| | ||||| || ||||| || |||||||| ||| || |||||| Sbjct 23713 CATTTCAGAGTGGATATTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGA 23772 Query 133251 CACCTGCA-CTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 ||||| | || ||| | ||| | | | | ||||| ||| ||||| |||||| || Sbjct 23773 AACCTGGATCTCCTTCA-TGAACCTCCCAGCGAGATTCTCGAGCACGATCCCGTCGGAGG 23831 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT-TGTCGTTCAAGCG---- 133364 | ||||| ||||| || || || ||| || || ||| | | ||| || | Sbjct 23832 CTGCGAAGAAGGCGAGGACATGAGAGATAAAGTGCTTCTCATCAGAAGTT--AGGGTTTC 23889 Query 133365 CTCCCAGTCGCGCGTGTCCTTG-GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 |||||| | || | | |||| || ||||| ||||||||| ||||||| ||||| || | Sbjct 23890 CTCCCAATGACG-GAGATCTTGTGAGAGGTCAACCTCCTCGGCGGTCCAGAACGAGGCTT 23948 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGA 133454 |||| || || ||||| |||| ||| | ||| Sbjct 23949 CGGCCTTCTTATACAT-CTCC-CATATGCGA 23977 >seq48644 Length=2856 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| || || || || || || ||| | || || || | Sbjct 2063 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2004 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | |||| || |||| ||||| || || || || | ||| Sbjct 2003 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 1944 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| ||||||||||| || |||| || |||||| ||||||| Sbjct 1943 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 1884 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||||| | || || || ||||||| ||| Sbjct 1883 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCTCCGT 1845 >seq45117 Length=3449 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| || || || || || || ||| | || || || | Sbjct 2656 AAGATGCAGATCTTTGTGAAAACACTAACCGGGAAGACGATAACCCTAGAGGTTGAATCT 2597 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | |||| || |||| ||||| || || || || | ||| Sbjct 2596 TCCGACACCATCGACAATGTGAAAGCGAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2537 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | ||| ||||||||||| || |||| || |||||| ||||||| Sbjct 2536 CAGCAGCGTCTCATCTTCGCCGGCAAACAGCTAGAGGACGGTCGTACCCTCGCCGACTAC 2477 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||||| | || || || ||||||| ||| Sbjct 2476 AACATTCAAAAGGAGTCTACCCTCCACCTGGTGCTCCGT 2438 >seq1982 Length=56187 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||| || | ||||| ||||| ||||| | ||| || || ||||| || Sbjct 32284 GACAAGGAGGGAATCCCACCGGACCAGCAGCGACTCATCTTCGCCGGGAAGCAGCTCGAA 32343 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || || || ||||||||||||||| |||||| ||||||| || |||||||| Sbjct 32344 GACGGCCGTACTCTTGCCGACTACAACATCCAGAAGGAATCGACGCTTCACTTGGTGCTT 32403 Query 38457 CGT 38459 ||| Sbjct 32404 CGT 32406 >seq9434 Length=50679 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||||||||| || || || ||||| || ||||| | || |||||| | | Sbjct 45849 ATGCAGATATTCGTAAAGACCCTAACTGGCAAGACTATCACACTTGAAGTCGAGAGCTCA 45790 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || || | ||||| |||||||||||| | || || Sbjct 45789 GACACAATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 45730 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||| || || || || | | ||||| || || ||| Sbjct 45729 CAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGATGGAAGGACCCTTGCAGATTATAAC 45670 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || |||||||| ||| Sbjct 45669 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGT 45634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | | Sbjct 46077 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTTGAAAGCTCT 46018 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || |||| ||||| |||||||||||| | ||||| Sbjct 46017 GACACAATTGACAACG-TAAAAGCTAAGATCCAAGACAAGGAGGGAATTCCCCCTGACCA 45959 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | || || || || || || || | | ||||| || ||||| Sbjct 45958 ACAAAGACTTATCTTTGCCGGAAAGCAACTAGAGGATGGAAGGACCCTTGCTGATTACAA 45899 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || || | || || || |||||||| ||| | ||||| || Sbjct 45898 TATTCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCAGAGGTGG 45851 >seq4213 Length=62956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCA-CGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || ||||| || ||| | ||||| ||| |||| || || || ||| || | || ||| | Sbjct 19561 AAGATGCAGATCTTCATGAAAACCTTCAACGGGGAAGACGATAACCCTCTAGGTTGAGTC 19620 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | | | || | || || ||||| |||||||| || | || Sbjct 19621 TTCCGACACCATCGATAATGTGAAGGCCAAGATTTAGGACAAGGAGGGAATCCCACCGGA 19680 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| || ||||| | ||| || || |||| | | ||| | || || |||||| Sbjct 19681 CCAACAACGACTCATCTTCGCCGGAAAGTAGCTCAAAGGCGACCATACTCTTGCCGACTA 19740 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||| |||||| || |||| || ||| Sbjct 19741 CAACATCCAAAAGGAATAGACGCTTCACCTGGTACTTCGT 19780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497749500296960