Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4197 125 9e-24 seq2652 118 1e-21 seq270 102 1e-16 seq2786 95.1 1e-14 >seq4197 Length=36674 Score = 125 bits (138), Expect = 9e-24 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| | | |||||| | |||||| | || ||||| | | |||||||| || Sbjct 23673 GAGAAGCACCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGAC 23614 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGT--TCCTTTGCTGAGCGACTCTTCGCAT 102195 ||||| | ||| ||||| | ||| ||||| |||||||| | | || | Sbjct 23613 TGGGCGCTCCGCTGGATTGATTC-----CGCAGAATCCTTCGCTGAGCGCATAGTTGCTT 23559 Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255 |||| || ||||| ||||||||||||||||| ||||||||| || | |||||| || | Sbjct 23558 TTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAA 23499 Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||||| || ||||| || || |||||| |||||| | ||||| || ||||| || Sbjct 23498 AGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGG 23441 >seq2652 Length=45542 Score = 118 bits (130), Expect = 1e-21 Identities = 222/321 (69%), Gaps = 14/321 (4%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 |||||||||||||| ||||| |||||||| || || || || | |||||||| | || Sbjct 43218 AAACCATCCATCTCGGTCAACAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCC--GC 43161 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 ||| || || | | ||| | ||||| ||||||||||||||||||||||| |||| Sbjct 43160 CCCCCAGGCCGGCGCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGC 43101 Query 16093 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 | || ||| | || || | ||||| ||||||| || | | ||| || || Sbjct 43100 AGGGGGCCTTGCTCTTGGCCTTC----TCAAACAGATCCCTCACCCTCGAGGCCCCAACC 43045 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || || |||| |||||| || | | ||| | || || |||||| || | ||| Sbjct 43044 CCTACGAACAGCTCCACGAACTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCC 42985 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 ||||| | || | || || || ||||| ||||| || ||| |||| | || | ||| Sbjct 42984 CCCGCCACTGCCCTCGCCAGCAGCGTCTTCCCCGTCCCAGGCGGACCCACCAGCA-AGCA 42926 Query 16269 CCTCGT-GGAATCTTGGCGCC 16288 || | | |||||||| || || Sbjct 42925 CCCCTTAGGAATCTTAGCTCC 42905 >seq270 Length=105985 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || |||||| || |||| || || || || || || ||||||||||| || | Sbjct 91955 TCCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGC 91896 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| | | ||||| || || || ||||| |||||||| | |||||||||| Sbjct 91895 TTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAAC 91836 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || | ||||| || | ||| || ||||| Sbjct 91835 GAGCTTATATCCAGAGACGAAGGCTTACACTGTGATTTTGC 91795 >seq2786 Length=62223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/334 (67%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || || || || || || | ||| || || | | || || Sbjct 37744 ATCAAGAATGTCTGCTCTGTTGGTAGCAGCAATAACGATAATTCCAGTATTGCCCTCGAA 37685 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||| || |||||||| ||||| | ||||||||| | |||||||||| || Sbjct 37684 TCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCTCCACC 37625 Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | | || | || | ||| | || || |||||||| ||||||| || || ||||| || Sbjct 37624 AACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATGCAAGG 37565 Query 16097 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 16156 ||| || || | || || || || || | ||| || ||||||||||| Sbjct 37564 AGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCAACAAA 37505 Query 16157 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 16215 |||||| ||||| | | | | | || | | ||| || ||| | ||| || |||| Sbjct 37504 CATCTCAACAAACTCAGAACCAG-AGATAGAAAAGAAAGGTACACCGGCTTCCCCAGCAA 37446 Query 16216 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || || | ||||||||| || || ||||| Sbjct 37445 TAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGG 37412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617734949627680