Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4197 125 9e-24
seq2652 118 1e-21
seq270 102 1e-16
seq2786 95.1 1e-14
>seq4197
Length=36674
Score = 125 bits (138), Expect = 9e-24
Identities = 171/238 (72%), Gaps = 7/238 (3%)
Strand=Plus/Minus
Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137
|||||| | | |||||| | |||||| | || ||||| | | |||||||| ||
Sbjct 23673 GAGAAGCACCGGCTCTTCCACGCCATCGATACTGTTCCCGCTGTCACCAAGAAAGCCGAC 23614
Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGT--TCCTTTGCTGAGCGACTCTTCGCAT 102195
||||| | ||| ||||| | ||| ||||| |||||||| | | || |
Sbjct 23613 TGGGCGCTCCGCTGGATTGATTC-----CGCAGAATCCTTCGCTGAGCGCATAGTTGCTT 23559
Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255
|||| || ||||| ||||||||||||||||| ||||||||| || | |||||| || |
Sbjct 23558 TTGCCTGCGTTGAAGGTATCTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGCTAAAAA 23499
Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313
||||||| || ||||| || || |||||| |||||| | ||||| || ||||| ||
Sbjct 23498 AGCGAGGACTGATGCCTGGACTAACCTTCTCGAACGAGTTGATCTCCCGCGACGAAGG 23441
>seq2652
Length=45542
Score = 118 bits (130), Expect = 1e-21
Identities = 222/321 (69%), Gaps = 14/321 (4%)
Strand=Plus/Minus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|||||||||||||| ||||| |||||||| || || || || | |||||||| | ||
Sbjct 43218 AAACCATCCATCTCGGTCAACAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCC--GC 43161
Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
||| || || | | ||| | ||||| ||||||||||||||||||||||| ||||
Sbjct 43160 CCCCCAGGCCGGCGCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGC 43101
Query 16093 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148
| || ||| | || || | ||||| ||||||| || | | ||| || ||
Sbjct 43100 AGGGGGCCTTGCTCTTGGCCTTC----TCAAACAGATCCCTCACCCTCGAGGCCCCAACC 43045
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208
|| || |||| |||||| || | | ||| | || || |||||| || | |||
Sbjct 43044 CCTACGAACAGCTCCACGAACTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCC 42985
Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268
||||| | || | || || || ||||| ||||| || ||| |||| | || | |||
Sbjct 42984 CCCGCCACTGCCCTCGCCAGCAGCGTCTTCCCCGTCCCAGGCGGACCCACCAGCA-AGCA 42926
Query 16269 CCTCGT-GGAATCTTGGCGCC 16288
|| | | |||||||| || ||
Sbjct 42925 CCCCTTAGGAATCTTAGCTCC 42905
>seq270
Length=105985
Score = 102 bits (112), Expect = 1e-16
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
||||| || |||||| || |||| || || || || || || ||||||||||| || |
Sbjct 91955 TCCTTCGCCGAGCGAATCGTCGCTTTCGCTTGCGTGGAAGGCATCTTCTTCTCCGGAAGC 91896
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| | | ||||| || || || ||||| |||||||| | ||||||||||
Sbjct 91895 TTCTGCGCCGTATTCTGGCTAAAAAAACGCGGTCTGATGCCAGGATTGACCTTCTCCAAC 91836
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||||||| || | ||||| || | ||| || |||||
Sbjct 91835 GAGCTTATATCCAGAGACGAAGGCTTACACTGTGATTTTGC 91795
>seq2786
Length=62223
Score = 95.1 bits (104), Expect = 1e-14
Identities = 223/334 (67%), Gaps = 2/334 (1%)
Strand=Plus/Minus
Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976
|||||| || || | | || || || || || || | ||| || || | | || ||
Sbjct 37744 ATCAAGAATGTCTGCTCTGTTGGTAGCAGCAATAACGATAATTCCAGTATTGCCCTCGAA 37685
Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036
|||||||| || |||||||| ||||| | ||||||||| | |||||||||| ||
Sbjct 37684 TCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCTCCACC 37625
Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096
| | || | || | ||| | || || |||||||| ||||||| || || ||||| ||
Sbjct 37624 AACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATGCAAGG 37565
Query 16097 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 16156
||| || || | || || || || || | ||| || |||||||||||
Sbjct 37564 AGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCAACAAA 37505
Query 16157 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 16215
|||||| ||||| | | | | | || | | ||| || ||| | ||| || ||||
Sbjct 37504 CATCTCAACAAACTCAGAACCAG-AGATAGAAAAGAAAGGTACACCGGCTTCCCCAGCAA 37446
Query 16216 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
| || || | ||||||||| || || |||||
Sbjct 37445 TAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGG 37412
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617734949627680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |