Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2652 127 2e-24 seq2786 100 3e-16 seq4197 96.9 4e-15 seq270 87.8 2e-12 >seq2652 Length=45542 Score = 127 bits (140), Expect = 2e-24 Identities = 251/366 (69%), Gaps = 14/366 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 |||||||||||||| ||||| || ||||| || || || || | |||||||| | || Sbjct 43218 AAACCATCCATCTCGGTCAACAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCC--GC 43161 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 ||| || || | | ||| | ||||| |||||||||||||||||||||||||| | Sbjct 43160 CCCCCAGGCCGGCGCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGC 43101 Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 | || ||| | || ||| | ||||| ||||| | ||||| ||| || || Sbjct 43100 AGGGGGCCTTGCTCTT----GGCCTTCTCAAACAGATCCCTCACCCTCGAGGCCCCAACC 43045 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || || |||| |||||| || | | ||| | || || |||||| || | ||| Sbjct 43044 CCTACGAACAGCTCCACGAACTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCC 42985 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 ||||| | || | || || || ||||| ||||| || ||| |||| | || | ||| Sbjct 42984 CCCGCCACTGCCCTCGCCAGCAGCGTCTTCCCCGTCCCAGGCGGACCCACCAGCA-AGCA 42926 Query 9576 CCCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||| | |||||||| || || | ||| | ||||| | |||||| ||||| || Sbjct 42925 CCCCTTAGGAATCTTAGCTCCCAGGGCCGTGTACTTGTCAGGGTTCTTGAGGAAATCGAC 42866 Query 9635 AATCTC 9640 | ||| Sbjct 42865 CACCTC 42860 >seq2786 Length=62223 Score = 100 bits (110), Expect = 3e-16 Identities = 191/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338 || || |||||||| || |||||||||||||| | ||||||||| | |||||||||| || Sbjct 37689 TCGAATCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCT 37630 Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | || | || | ||| | || || |||||||| ||||||| || || || Sbjct 37629 CCACCAACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATG 37570 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || ||| || || | | || || || || || || ||| || |||||| Sbjct 37569 CAAGGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCA 37510 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| ||||| | | | | | || | | ||| || ||| | ||| || Sbjct 37509 ACAAACATCTCAACAAACTCAGAACCAG-AGATAGAAAAGAAAGGTACACCGGCTTCCCC 37451 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || || | ||||||||| || || ||||| Sbjct 37450 AGCAATAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGG 37412 >seq4197 Length=36674 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || || ||||| || | || || |||||| ||| || ||||| || || ||||| Sbjct 23441 CCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCTCGCTTT 23500 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | |||| | || |||||||| || |||||||||||||| || || || ||||| Sbjct 23501 TTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAGGCAAAA 23560 Query 117412 GCAAAAAGGCGCTCGGCGAAGGA 117434 |||| | |||||| |||||||| Sbjct 23561 GCAACTATGCGCTCAGCGAAGGA 23583 >seq270 Length=105985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | || || |||| ||| ||||| || || |||||| | ||| Sbjct 91795 GCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCT 91854 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| ||||| || || || | ||| | | |||||||| |||||||||||||| Sbjct 91855 GGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATG 91914 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || ||||| || || || || | | |||||||||||||| Sbjct 91915 CCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGA 91955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587122387272560