Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2652 127 2e-24
seq2786 100 3e-16
seq4197 96.9 4e-15
seq270 87.8 2e-12
>seq2652
Length=45542
Score = 127 bits (140), Expect = 2e-24
Identities = 251/366 (69%), Gaps = 14/366 (4%)
Strand=Plus/Minus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|||||||||||||| ||||| || ||||| || || || || | |||||||| | ||
Sbjct 43218 AAACCATCCATCTCGGTCAACAGCTGGTTGATCGTCTGCTCTCTCTCATCATTGCC--GC 43161
Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399
||| || || | | ||| | ||||| |||||||||||||||||||||||||| |
Sbjct 43160 CCCCCAGGCCGGCGCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATGAAGACAATGC 43101
Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455
| || ||| | || ||| | ||||| ||||| | ||||| ||| || ||
Sbjct 43100 AGGGGGCCTTGCTCTT----GGCCTTCTCAAACAGATCCCTCACCCTCGAGGCCCCAACC 43045
Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515
|| || |||| |||||| || | | ||| | || || |||||| || | |||
Sbjct 43044 CCTACGAACAGCTCCACGAACTCAGAGGCCGCGCAAGAGAAGAAGGGCACCCCGGCTTCC 42985
Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575
||||| | || | || || || ||||| ||||| || ||| |||| | || | |||
Sbjct 42984 CCCGCCACTGCCCTCGCCAGCAGCGTCTTCCCCGTCCCAGGCGGACCCACCAGCA-AGCA 42926
Query 9576 CCCCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634
|||| | |||||||| || || | ||| | ||||| | |||||| ||||| ||
Sbjct 42925 CCCCTTAGGAATCTTAGCTCCCAGGGCCGTGTACTTGTCAGGGTTCTTGAGGAAATCGAC 42866
Query 9635 AATCTC 9640
| |||
Sbjct 42865 CACCTC 42860
>seq2786
Length=62223
Score = 100 bits (110), Expect = 3e-16
Identities = 191/279 (68%), Gaps = 2/279 (1%)
Strand=Plus/Minus
Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9338
|| || |||||||| || |||||||||||||| | ||||||||| | |||||||||| ||
Sbjct 37689 TCGAATCCATCCATTTCAGTCAAAAGTTGGTTTAGAGTTTGTTCTCTTTCATCATTCCCT 37630
Query 9339 GGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | || | || | ||| | || || |||||||| ||||||| || || ||
Sbjct 37629 CCACCAACCCCTGTACCTCTTTGTCTACCAACAGCATCAATTTCATCAACAAACACTATG 37570
Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458
|| || ||| || || | | || || || || || || ||| || ||||||
Sbjct 37569 CAAGGAGCATTCTCCTTTGCTTTCTTGAATAGGTCACGGACTCTAGAGGCACCAACACCA 37510
Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517
||||||||||| ||||| | | | | | || | | ||| || ||| | ||| ||
Sbjct 37509 ACAAACATCTCAACAAACTCAGAACCAG-AGATAGAAAAGAAAGGTACACCGGCTTCCCC 37451
Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
||||| || || | ||||||||| || || |||||
Sbjct 37450 AGCAATAGCCTTAGCCAAAAGAGTCTTTCCGGTTCCTGG 37412
>seq4197
Length=36674
Score = 96.9 bits (106), Expect = 4e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351
|| || || ||||| || | || || |||||| ||| || ||||| || || |||||
Sbjct 23441 CCTTCGTCGCGGGAGATCAACTCGTTCGAGAAGGTTAGTCCAGGCATCAGTCCTCGCTTT 23500
Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
|| | |||| | || |||||||| || |||||||||||||| || || || |||||
Sbjct 23501 TTTAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAGATACCTTCAACGCAGGCAAAA 23560
Query 117412 GCAAAAAGGCGCTCGGCGAAGGA 117434
|||| | |||||| ||||||||
Sbjct 23561 GCAACTATGCGCTCAGCGAAGGA 23583
>seq270
Length=105985
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333
||||| || ||| | || || |||| ||| ||||| || || |||||| | |||
Sbjct 91795 GCAAAATCACAGTGTAAGCCTTCGTCTCTGGATATAAGCTCGTTGGAGAAGGTCAATCCT 91854
Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393
||||| ||||| || || || | ||| | | |||||||| ||||||||||||||
Sbjct 91855 GGCATCAGACCGCGTTTTTTTAGCCAGAATACGGCGCAGAAGCTTCCGGAGAAGAAGATG 91914
Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434
|| ||||| || || || || | | ||||||||||||||
Sbjct 91915 CCTTCCACGCAAGCGAAAGCGACGATTCGCTCGGCGAAGGA 91955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587122387272560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |