Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 369 4e-97
seq8546 246 4e-60
seq59 179 4e-40
seq25216 178 2e-39
seq29420 170 2e-37
seq3927 154 2e-32
seq8630 96.9 4e-15
seq2610 84.2 3e-11
seq3197 82.4 9e-11
>seq5412
Length=31808
Score = 369 bits (408), Expect = 4e-97
Identities = 499/693 (72%), Gaps = 8/693 (1%)
Strand=Plus/Minus
Query 179794 GGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCC 179852
|||| |||||| |||||||||| || | ||| | ||||| ||| | || || | |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 179853 TTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTC 179912
||||| |||||||| || || || || ||||| || |||||||| || ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 179913 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTT 179972
| || || ||||| || ||||||||||| || ||| ||| || || ||| |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 179973 CACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCT 180032
||||| ||||| || |||||||| ||||| |||| || ||| | || || ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 180033 TTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGG 180092
| | || | || || |||||| | |||| | | ||||||||||||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 180093 GAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTC 180152
|||||| || || ||||||||||||| ||||| || || ||||| || || ||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 180153 GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCA 180212
|| | || ||||||| ||| | |||| || | ||| |||| || ||| | |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 180272
||||| || || |||||||| || ||||||| |||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 180273 ATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTC 180332
||||| |||||||| || |||||| | || ||||| ||||| |||| ||| | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 180333 TCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAG 180392
| ||| ||||| |||| ||||| || | | |||||||| |||| |||
Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 180393 TCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCA 180452
|| || | ||||||| | |||||||||| |||||||| || || ||||| |||||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 180453 CATGGATACTTCGGTCGTCTGATCTTCCAGTAT 180485
||||| || || || || | |||||||| |||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 180598 TCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACG 180657
|||| |||||||| || | ||||| ||||||||||||| | || |||||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 180658 TACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 180717
| | |||||| || || ||||||||||||||||| || |||||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 180718 CACTTGACCTGGCAGC 180733
| || ||||| |||||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 246 bits (272), Expect = 4e-60
Identities = 321/444 (72%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 180291 CACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCA 180350
|||||| | || ||||| ||||| |||||||| || | ||| | ||||| |||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 180351 CTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTAC 180410
|||| |||||| || | | |||||||| |||| | | ||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 180411 AAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGT 180470
| ||||||||||| || || || | || || || ||||| ||||| || || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 180471 CTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCA 180530
| |||||||| ||||| |||||| | || | ||| | || |||||| | | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 180531 TGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTC 180590
|||||||| || || || ||||| ||| | | || | || || |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 180591 AACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGG 180650
||||| ||||| |||||||| || | ||||| ||||||||||||| || ||||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849
Query 180651 GCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 180710
|| || | | ||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 180711 AACTTCCCACTTGACCTGGCAGCT 180734
||||||| || ||||| || |||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq59
Length=339703
Score = 179 bits (198), Expect = 4e-40
Identities = 194/257 (75%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 180201 TTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAA 180260
|| ||||| | ||||| || || ||||||| || ||||||| |||| |||| |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 180261 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGC 180320
|| |||||||||||||| |||||||| || |||||| | | ||||| ||||| ||||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 180321 GGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACC 180380
|| || || ||| | ||||| ||||| |||| ||||| || || | ||||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 180381 ACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAAC 180440
|| |||| ||| || || | ||||||| |||||||||||| |||||||| || ||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 180441 ATCGTTGCTGCACATGG 180457
|| || ||| | |||||
Sbjct 52549 ATTGTAGCTACTCATGG 52565
>seq25216
Length=8180
Score = 178 bits (196), Expect = 2e-39
Identities = 194/255 (76%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 180108 TTGGGTATGCGCCCCTGGATCTGCG-TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166
|| ||||||||||| ||||| ||| | || ||||| ||||| || || || || ||||
Sbjct 7256 TTTGGTATGCGCCCTTGGAT-TGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGC 7198
Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226
||| ||| | |||| || | |||||||| || ||||| | ||||| || || ||
Sbjct 7197 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7138
Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286
|||||| || ||||||| |||| |||| ||||| | |||||||||||||| ||||||||
Sbjct 7137 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCC 7078
Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346
|| |||||| | || |||| ||||| |||||||| || || ||| || ||||| ||
Sbjct 7077 ATTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018
Query 180347 TTCACTGGTTACCTC 180361
||| |||| |||||
Sbjct 7017 TTCTTTGGTAACCTC 7003
>seq29420
Length=7120
Score = 170 bits (188), Expect = 2e-37
Identities = 256/361 (71%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 179861 TGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGG 179920
|||||| || || || || ||||| || |||||||| || |||| || || | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 179921 TAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTA 179980
||||| || |||||||||| || |||| |||| || || ||| | ||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 179981 TCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 180040
||| || |||||||| ||||| |||| || ||| | || || |||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 180041 TGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTC 180100
|| || |||||| | |||| | | ||||||||||||||||||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 180101 TTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAG 180159
|| || ||||||||||||| ||||| ||| || || ||||| | ||| || || || |
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713
Query 180160 CATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCC 180219
| || || | ||| | |||| || | |||||||| || ||||| | ||||| |
Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773
Query 180220 T 180220
|
Sbjct 3774 T 3774
>seq3927
Length=49767
Score = 154 bits (170), Expect = 2e-32
Identities = 184/246 (75%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 181712 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTT 181771
||| ||||||| || ||||| || || || | || || ||||||||| | | ||||||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 181772 GAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTAT 181830
||||||||||| ||| || | | ||||| || ||||| || || || | ||||| ||
Sbjct 26067 GAACTTGCTCGATCTGTTCA-ATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125
Query 181831 TGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGC 181890
||| | || || || || ||||| || ||||| || || || || |||||||||||||
Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185
Query 181891 GCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAA 181950
||| ||||| ||||| || | || || || ||| | ||||| | || || ||||||||
Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244
Query 181951 TTGGAC 181956
||||||
Sbjct 26245 TTGGAC 26250
>seq8630
Length=23577
Score = 96.9 bits (106), Expect = 4e-15
Identities = 120/163 (74%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434
||| |||| ||| ||| ||| || | |||||||| ||||||||||| || || ||
Sbjct 7467 GAACCCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACT 7526
Query 180435 TACAACATCGT-TGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTT 180493
|| || ||||| ||||| ||||| || || ||||| | |||||||| ||||| ||
Sbjct 7527 TAGAATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTT 7586
Query 180494 CAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCT 180536
|||||| || ||||| | || ||||| | || || ||||||
Sbjct 7587 CAACAATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629
>seq2610
Length=55653
Score = 84.2 bits (92), Expect = 3e-11
Identities = 129/184 (70%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 171910 TGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGTT 171969
||||| | || || | || || | ||| |||||| || ||||| || ||||| ||||
Sbjct 39285 TGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGTGCCGAGCTGGTGCTTGTT 39344
Query 171970 CCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTTG 172029
| | ||||||||| || || ||| | || || |||||||| || |||||||
Sbjct 39345 CAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGTCAGACGGGTCCTTCCTTG 39404
Query 172030 ATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGATT 172089
||||||| ||||| | || | ||| ||||| || || || || ||||| | ||||
Sbjct 39405 ATGATGACCAAATTAATCAGGGCTACGTACTGACTTGCGTCGCGTACCCTACCGGAGATT 39464
Query 172090 GTGT 172093
||||
Sbjct 39465 GTGT 39468
>seq3197
Length=41818
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/87 (83%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 171996 GGTACGGTAGATCAGTCAGA-GCAATCTTTCCTTGATGATGATCAAATGGACGCAGGATT 172054
||| | || ||||| ||||| | || ||| ||||||||||||||| || || | |||||
Sbjct 27727 GGTGCTGTTGATCAATCAGATGGAAGCTT-CCTTGATGATGATCAGATTGAAGAAGGATG 27785
Query 172055 CGTTCTGACCTGTGTTGCTTATCCTAC 172081
||||| ||||||||||||||||||||
Sbjct 27786 GGTTCTCACCTGTGTTGCTTATCCTAC 27812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 607439473283760
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