Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq5412 369 4e-97 seq8546 246 4e-60 seq59 179 4e-40 seq25216 178 2e-39 seq29420 170 2e-37 seq3927 154 2e-32 seq8630 96.9 4e-15 seq2610 84.2 3e-11 seq3197 82.4 9e-11 >seq5412 Length=31808 Score = 369 bits (408), Expect = 4e-97 Identities = 499/693 (72%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 179794 GGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCC 179852 |||| |||||| |||||||||| || | ||| | ||||| ||| | || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 179853 TTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTC 179912 ||||| |||||||| || || || || ||||| || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 179913 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTT 179972 | || || ||||| || ||||||||||| || ||| ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 179973 CACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCT 180032 ||||| ||||| || |||||||| ||||| |||| || ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 180033 TTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGG 180092 | | || | || || |||||| | |||| | | |||||||||||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 180093 GAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTC 180152 |||||| || || ||||||||||||| ||||| || || ||||| || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 180153 GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCA 180212 || | || ||||||| ||| | |||| || | ||| |||| || ||| | | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 180272 ||||| || || |||||||| || ||||||| |||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 180273 ATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTC 180332 ||||| |||||||| || |||||| | || ||||| ||||| |||| ||| | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 180333 TCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAG 180392 | ||| ||||| |||| ||||| || | | |||||||| |||| ||| Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 180393 TCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCA 180452 || || | ||||||| | |||||||||| |||||||| || || ||||| ||||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 180453 CATGGATACTTCGGTCGTCTGATCTTCCAGTAT 180485 ||||| || || || || | |||||||| ||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 180598 TCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACG 180657 |||| |||||||| || | ||||| ||||||||||||| | || |||||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 180658 TACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 180717 | | |||||| || || ||||||||||||||||| || |||||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 180718 CACTTGACCTGGCAGC 180733 | || ||||| ||||| Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 246 bits (272), Expect = 4e-60 Identities = 321/444 (72%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 180291 CACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCA 180350 |||||| | || ||||| ||||| |||||||| || | ||| | ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 180351 CTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTAC 180410 |||| |||||| || | | |||||||| |||| | | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 180411 AAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGT 180470 | ||||||||||| || || || | || || || ||||| ||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 180471 CTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCA 180530 | |||||||| ||||| |||||| | || | ||| | || |||||| | | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 180531 TGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTC 180590 |||||||| || || || ||||| ||| | | || | || || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 180591 AACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGG 180650 ||||| ||||| |||||||| || | ||||| ||||||||||||| || |||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 180651 GCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 180710 || || | | ||||||||| || ||||||||||||||||| || ||||||||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 180711 AACTTCCCACTTGACCTGGCAGCT 180734 ||||||| || ||||| || ||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq59 Length=339703 Score = 179 bits (198), Expect = 4e-40 Identities = 194/257 (75%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 180201 TTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAA 180260 || ||||| | ||||| || || ||||||| || ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 180261 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGC 180320 || |||||||||||||| |||||||| || |||||| | | ||||| ||||| |||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 180321 GGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACC 180380 || || || ||| | ||||| ||||| |||| ||||| || || | |||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 180381 ACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAAC 180440 || |||| ||| || || | ||||||| |||||||||||| |||||||| || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 180441 ATCGTTGCTGCACATGG 180457 || || ||| | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq25216 Length=8180 Score = 178 bits (196), Expect = 2e-39 Identities = 194/255 (76%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 180108 TTGGGTATGCGCCCCTGGATCTGCG-TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 180166 || ||||||||||| ||||| ||| | || ||||| ||||| || || || || |||| Sbjct 7256 TTTGGTATGCGCCCTTGGAT-TGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGC 7198 Query 180167 TGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCAT 180226 ||| ||| | |||| || | |||||||| || ||||| | ||||| || || || Sbjct 7197 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7138 Query 180227 TTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCC 180286 |||||| || ||||||| |||| |||| ||||| | |||||||||||||| |||||||| Sbjct 7137 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCC 7078 Query 180287 CTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGG 180346 || |||||| | || |||| ||||| |||||||| || || ||| || ||||| || Sbjct 7077 ATTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 Query 180347 TTCACTGGTTACCTC 180361 ||| |||| ||||| Sbjct 7017 TTCTTTGGTAACCTC 7003 >seq29420 Length=7120 Score = 170 bits (188), Expect = 2e-37 Identities = 256/361 (71%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 179861 TGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGG 179920 |||||| || || || || ||||| || |||||||| || |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 179921 TAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTA 179980 ||||| || |||||||||| || |||| |||| || || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 179981 TCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACT 180040 ||| || |||||||| ||||| |||| || ||| | || || |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 180041 TGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTC 180100 || || |||||| | |||| | | |||||||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 180101 TTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAG 180159 || || ||||||||||||| ||||| ||| || || ||||| | ||| || || || | Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCGTATTCAGTTCCTGTTGCGGCTG 3713 Query 180160 CATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCC 180219 | || || | ||| | |||| || | |||||||| || ||||| | ||||| | Sbjct 3714 CTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTC 3773 Query 180220 T 180220 | Sbjct 3774 T 3774 >seq3927 Length=49767 Score = 154 bits (170), Expect = 2e-32 Identities = 184/246 (75%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 181712 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTT 181771 ||| ||||||| || ||||| || || || | || || ||||||||| | | |||||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 181772 GAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTAT 181830 ||||||||||| ||| || | | ||||| || ||||| || || || | ||||| || Sbjct 26067 GAACTTGCTCGATCTGTTCA-ATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 181831 TGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGC 181890 ||| | || || || || ||||| || ||||| || || || || ||||||||||||| Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 181891 GCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAA 181950 ||| ||||| ||||| || | || || || ||| | ||||| | || || |||||||| Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 181951 TTGGAC 181956 |||||| Sbjct 26245 TTGGAC 26250 >seq8630 Length=23577 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434 ||| |||| ||| ||| ||| || | |||||||| ||||||||||| || || || Sbjct 7467 GAACCCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACT 7526 Query 180435 TACAACATCGT-TGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTT 180493 || || ||||| ||||| ||||| || || ||||| | |||||||| ||||| || Sbjct 7527 TAGAATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTT 7586 Query 180494 CAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCT 180536 |||||| || ||||| | || ||||| | || || |||||| Sbjct 7587 CAACAATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629 >seq2610 Length=55653 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171910 TGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGTT 171969 ||||| | || || | || || | ||| |||||| || ||||| || ||||| |||| Sbjct 39285 TGGACTCAGCTGAGAATGCTGGCTTGGATCTTCCATACTCGTGCCGAGCTGGTGCTTGTT 39344 Query 171970 CCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTTG 172029 | | ||||||||| || || ||| | || || |||||||| || ||||||| Sbjct 39345 CAACCTGTGCTGGGAAGCTGATTTCTGGATCAGTCGACCAGTCAGACGGGTCCTTCCTTG 39404 Query 172030 ATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGATT 172089 ||||||| ||||| | || | ||| ||||| || || || || ||||| | |||| Sbjct 39405 ATGATGACCAAATTAATCAGGGCTACGTACTGACTTGCGTCGCGTACCCTACCGGAGATT 39464 Query 172090 GTGT 172093 |||| Sbjct 39465 GTGT 39468 >seq3197 Length=41818 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 171996 GGTACGGTAGATCAGTCAGA-GCAATCTTTCCTTGATGATGATCAAATGGACGCAGGATT 172054 ||| | || ||||| ||||| | || ||| ||||||||||||||| || || | ||||| Sbjct 27727 GGTGCTGTTGATCAATCAGATGGAAGCTT-CCTTGATGATGATCAGATTGAAGAAGGATG 27785 Query 172055 CGTTCTGACCTGTGTTGCTTATCCTAC 172081 ||||| |||||||||||||||||||| Sbjct 27786 GGTTCTCACCTGTGTTGCTTATCCTAC 27812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607439473283760