Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5412 311 1e-79 seq8546 192 7e-44 seq29420 163 3e-35 seq25216 156 5e-33 seq59 138 1e-27 seq1372 118 1e-21 seq67 116 4e-21 >seq5412 Length=31808 Score = 311 bits (344), Expect = 1e-79 Identities = 486/693 (70%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 169448 GGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCAT 169507 ||||||| ||| | |||||||| |||| | || ||| || | || || | || | Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224 Query 169508 TCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT-TTC 169566 ||||||| || ||||| || ||||| || || || | ||||| || || ||| ||| Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164 Query 169567 TTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTA 169626 || || || ||||| || ||||||||||| || ||| | | ||||| || | Sbjct 15163 TT-TACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 169627 CACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCT 169686 ||||| || ||||| |||||||| ||| |||||||||||||||| || ||||||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 169687 TATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGG 169746 ||| || | | | || |||||| | ||||| | | |||||||| | ||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 169747 GAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 169806 ||||| | | | | || ||||| |||||||| |||||| || || || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 169807 TCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGT 169866 | |||| ||||| ||||| | |||||| ||||| | || || ||| ||||| Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 169867 ATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAAC 169926 ||||| ||||| || || |||||||||||||| ||| | || ||||| || ||||| ||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 169927 ATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTC 169986 || || ||||| || || |||||| ||| ||||| || | |||| || | ||||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 169987 TCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAG 170046 | ||||||||| | || || || | | ||||| ||||| ||||| | || Sbjct 14744 ------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 170047 TCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCA 170106 || || | ||||| | | | || ||||| ||||| || || || || ||||| || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 170107 CACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 170139 || ||||| ||||| || | |||||||| ||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 >seq8546 Length=31398 Score = 192 bits (212), Expect = 7e-44 Identities = 308/441 (70%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 169945 CACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCA 170004 |||||| ||| ||||| || | ||||| || || ||||| | ||||||||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 170005 CTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTAT 170064 | || || || | | ||||| ||||| ||||| | | || || | ||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 170065 AAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGT 170124 | || || ||||| || ||||| | || || ||||| || || ||||| ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 170125 CTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTT 170184 | |||||||| |||||| |||||| | || | |||| |||||| ||| | | Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 170185 TTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTG 170244 | ||||| ||| || ||||||| || || | ||||| | || |||||||| | | | Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 170245 AATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACA-TG 170303 || || ||||| || |||||||| || |||||| | | || |||| | | || Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG-----TCGTGTAATTATTG 12850 Query 170304 GGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACA 170363 || ||| || | ||| | || ||| | ||||||||||||||||||||| | ||||| || Sbjct 12849 GGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 12790 Query 170364 CAACTTCCCACTAGACCTAGC 170384 ||||||| ||||||||||| Sbjct 12789 TAACTTCCATCTAGACCTAGC 12769 >seq29420 Length=7120 Score = 163 bits (180), Expect = 3e-35 Identities = 255/362 (70%), Gaps = 2/362 (1%) Strand=Plus/Plus Query 169516 GCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT-TTCTTGTATGG 169574 || ||||| || ||||| || || || | ||||| || | || ||| ||||| | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTC-ACGG 3474 Query 169575 TAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTA 169634 ||||| || |||||||||| || |||| | || ||||| || | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 169635 CCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTT 169694 ||||| |||||||| ||| |||||||||||||||| || ||||||||||||||| || | Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 169695 GGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATC 169754 | || |||||| | ||||| | | |||||||| | |||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 169755 ATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGC 169814 | | | | || ||||| |||||||| |||||| || || | || || | ||||| Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 169815 ATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACT 169874 || | ||||| | |||||| ||||||| || || |||||||||||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 Query 169875 AG 169876 || Sbjct 3775 AG 3776 >seq25216 Length=8180 Score = 156 bits (172), Expect = 5e-33 Identities = 201/276 (73%), Gaps = 1/276 (0%) Strand=Plus/Minus Query 169762 TTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCT 169821 || || ||||| |||||||| | |||| || || || || || | ||||| ||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 169822 GTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 169881 || ||||| | |||||| ||||||| || || |||||||||||||| ||||| || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 169882 TCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCT 169941 || |||||||||||||| ||| | || ||||| | ||||| ||||| || ||||| || Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 169942 TTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGT 170001 || |||||| ||| |||| || | ||||| || || ||||| || ||||||||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 170002 TCACTTGTTACTTCATCTCTAATCAGAGAAACAACA 170037 || | || || || | | ||||| ||||| ||| Sbjct 7016 TCTTTGGTAACCTCGAGTTTGATCAG-GAAACCACA 6982 >seq59 Length=339703 Score = 138 bits (152), Expect = 1e-27 Identities = 186/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914 || |||||||||||||| ||||| | || |||||||||||||| ||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGA 169974 || ||||| ||||| || ||||| || || |||||| | | ||||| || | ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 169975 GGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACA 170034 || || ||||| | ||||||||||| | || || || | | || || ||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 170035 ACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAAC 170094 ||||| | || || || | ||||| | ||| || ||||| ||||| || || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 170095 ATAGTAGCAGCACACGGTT 170113 || ||||| | || |||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq1372 Length=73576 Score = 118 bits (130), Expect = 1e-21 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 || |||||| ||||||| || |||||||| || ||||||||||| |||||||||||| Sbjct 58395 GAAAATCCTGGTTGGTATACTCAGTACACTCCTTACCAAGCTGAGATCTCTCAGGGAAGA 58454 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 |||||| | |||| ||||| ||||| | || || || ||||| ||||| || || | Sbjct 58455 TTGGAATCCCTATTGAATTATCAAACCATGATTACGGATCTTACCGGATTGCCTATGTCT 58514 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT 153432 || || ||| | | ||||||| || ||||| || || || || ||||| Sbjct 58515 AATGCTTCTTTGCTTGATGAAGGCACAGCAGCGGCCGAGGCTATGGCTAT 58564 Score = 109 bits (120), Expect = 6e-19 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| | |||||||| ||||| ||||||||||| || ||||| || || | Sbjct 58896 CAGAGGTTTGGTGTACCTATGGGGTATGGTGGTCCTCATGCCGCTTTCTTGGCTACTTCT 58955 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||| ||| || || || ||| | | || ||| || ||| || Sbjct 58956 CAAGAGTATAAGAGGTTGATGCCCGGGAGGATTATTGGAGTTAGT--GTTGATTCGTCAG 59013 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 |||| | || | | | || | ||||| || ||||| ||||||||||||||||| | Sbjct 59014 GTAAGCATGCTTTACGTATGGCTATGCAGACAAGGGAGCAACATATCAGGAGAGACAAGG 59073 Query 153946 CAACCAGTAACATCTGCACAGCTCAGGC 153973 | || || |||||||| || ||||| || Sbjct 59074 CTACAAGCAACATCTGTACTGCTCANGC 59101 >seq67 Length=256564 Score = 116 bits (128), Expect = 4e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264 |||| ||| || |||||| ||| || || ||||| || | | | || | | | Sbjct 184389 TTATTGGTATGGGTTACTATAATACCTTTGTCCCACCAGTGATTCTGAGGAATATAATGG 184330 Query 153265 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 153324 |||||||| ||||||| || |||||||| || ||||||||||| ||||| ||||||| Sbjct 184329 AGAATCCTGGTTGGTATACTCAATACACTCCTTACCAAGCTGAGATCTCTCAAGGAAGAT 184270 Query 153325 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAA 153384 ||||| | |||| || || ||||| | || || || ||||| ||||| || || | | Sbjct 184269 TGGAATCCCTATTGAACTATCAAACCATGATTACGGATCTTACTGGATTGCCTATGTCGA 184210 Query 153385 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT 153432 | || ||| | | ||||||| || ||||| || || || || ||||| Sbjct 184209 ATGCTTCTTTGCTTGATGAAGGCACAGCAGCGGCCGAGGCTATGGCTAT 184161 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || ||||||||| | |||||||| ||||| || |||||||| || ||||| || || | Sbjct 183829 CAGAGGTTTGGTGTACCTATGGGGTATGGTGGCCCTCATGCCGCTTTCTTGGCTACTTCT 183770 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGTGAAG 153885 | |||||||||| ||| ||||| |||||| | || ||| ||| ||| || Sbjct 183769 CAAGAGTATAAGAGGTTGATGCCTGGGAGAATTATTGG--AGTTAGTGTTGATTCGTCAG 183712 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 |||| | || | | | || | ||||| || ||||| ||||||||||||||||| | Sbjct 183711 GTAAGCATGCTTTGCGTATGGCTATGCAGACAAGGGAGCAACATATCAGGAGAGACAAGG 183652 Query 153946 CAACCAGTAACATCTGCACAGCTCAGGC 153973 | || || |||||||| || ||||| || Sbjct 183651 CTACAAGCAACATCTGTACTGCTCANGC 183624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576406557424960