Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq5412 389 4e-103 seq8546 273 2e-68 seq29420 199 4e-46 seq25216 183 3e-41 seq59 183 3e-41 seq8630 111 2e-19 seq78858 89.7 6e-13 seq4835 87.8 2e-12 seq13559 84.2 2e-11 >seq5412 Length=31808 Score = 389 bits (430), Expect = 4e-103 Identities = 505/693 (73%), Gaps = 10/693 (1%) Strand=Plus/Minus Query 163831 GGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGC 163888 |||| |||||| ||||||| ||||| || ||| | ||||| ||| || || || | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTAC-CTTATTGACCGCAAC-ATCCGTATTTATTATAGC 15226 Query 163889 CTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCT 163948 |||| | |||||||| || || || || ||||||||||||||||||||| || || || Sbjct 15225 CTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCT 15166 Query 163949 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCT 164008 | || || ||||| || ||||||||||| || ||| | | ||| || ||| | Sbjct 15165 TCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTT 15106 Query 164009 TCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCC 164068 ||||| || || || |||||||| ||||| ||||||||||| | ||||| |||||||| Sbjct 15105 GCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCC 15046 Query 164069 TTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTG 164128 | | || | || || |||||| | | ||| | | ||||||||||||||||| Sbjct 15045 ATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTG 14986 Query 164129 GGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGT 164188 |||||| || |||||| |||||||| ||||||||| |||||| || || || || || Sbjct 14985 GGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGT 14926 Query 164189 TGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGC 164248 ||| | || | || || ||| || |||| || | ||| |||| || ||| | | Sbjct 14925 TGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGG 14866 Query 164249 AATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAA 164308 ||||| || || || ||||| || ||||||| |||| | || ||||| || |||||||| Sbjct 14865 TATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 14806 Query 164309 CATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTT 164368 |||||| |||||||| || || ||| | ||||| ||||| ||||| | ||| | || || Sbjct 14805 CATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATT 14746 Query 164369 CAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGA 164428 ||| ||| |||||| |||| || || || | | |||||||| |||| ||| Sbjct 14745 CAG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGA 14692 Query 164429 GTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGC 164488 || || | ||||||| | |||||||||| ||||| || || || || || || || Sbjct 14691 ATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGC 14632 Query 164489 TCACGGTTACTTTGGTCGTCTGATCTTCCAATA 164521 ||| ||||| ||||| || | ||||||||||| Sbjct 14631 TCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 164635 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACG 164694 |||| |||||||| || | | ||| |||| |||||||| | || |||||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 164695 TTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCC 164754 || | |||||| || || ||||||||||||||||| || ||||| |||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 164755 CTCTGGATCTCGCTGC 164770 |||| || || || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 273 bits (302), Expect = 2e-68 Identities = 327/444 (74%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 164328 CATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCT 164387 || ||| | ||||| ||||| ||||| ||||| || | ||||||| ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 164388 CTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTAC 164447 |||| || ||| || | | |||||||| |||| | | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 164448 AAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGT 164507 | ||||||||||| || ||||| | || ||||| || ||||| ||||| ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 164508 CTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 164567 | ||||||||||| ||| |||||| | || | ||| || || |||||| | | ||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 164568 TGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTG 164627 |||||||| || || || ||||| || | | ||| || || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 164628 AACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGG 164687 ||||| ||||| |||||||| || | | ||| |||| |||||||| || |||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 164688 GCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCAC 164747 || || || | ||||||||| || ||||||||||||||||| || ||||| ||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 164748 AACTTCCCTCTGGATCTCGCTGCT 164771 ||||||| ||| || || |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 199 bits (220), Expect = 4e-46 Identities = 260/360 (72%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 163898 TGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGG 163957 |||||| || || || || ||||||||||||||||||||| | || || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 163958 TAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTA 164017 ||||| || |||||||||| || |||| | || ||| || ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 164018 CCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACT 164077 || || |||||||| ||||| ||||||||||| | ||||| |||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 164078 TGTCGTCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTC 164137 || || |||||| | | ||| | | ||||||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 164138 TTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGC 164197 || |||||| |||||||| ||||||||| |||||| || || | || ||||| || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 164198 ATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCT 164257 | | | ||| || |||| || | |||||||| || ||||| | ||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq25216 Length=8180 Score = 183 bits (202), Expect = 3e-41 Identities = 213/286 (74%), Gaps = 1/286 (0%) Strand=Plus/Minus Query 164146 TTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAG 164205 |||||||||| ||||||||| | |||| || || || || ||||| || || | || | Sbjct 7255 TTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTG 7196 Query 164206 TCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCT 164265 | ||| || |||| || | |||||||| || ||||| | ||||| || || || | Sbjct 7195 TTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 7136 Query 164266 CTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCT 164325 |||| || ||||||| |||| | || ||||| | |||||||||||||| |||||||| | Sbjct 7135 CTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCAT 7076 Query 164326 TCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTT 164385 | || ||| | ||||| | ||| ||||| ||||| || || |||||||| ||||| |||| Sbjct 7075 TTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 7016 Query 164386 CTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTC 164431 || |||| || || | | | || |||||||| ||| ||| || Sbjct 7015 CTTTGGTAACCTC-GAGTTTGATCAGGAAACCACATAAAATGAATC 6971 >seq59 Length=339703 Score = 183 bits (202), Expect = 3e-41 Identities = 197/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 164236 CGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCC 164295 |||| ||||| | ||||| || || | ||||| || ||||||| |||| | || |||| Sbjct 52307 CGTTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCC 52366 Query 164296 AAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTTG 164355 | || |||||||||||||| |||||||| || || ||| | |||| ||||| ||||| | Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426 Query 164356 GCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAA 164415 |||| || || ||||||| ||||| |||||| |||| || || || || | |||| Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486 Query 164416 CCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACA 164475 |||| |||| ||| || || | ||||||| |||||||||||| ||||| || || | Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546 Query 164476 ACATTGTTGCCGCTCACGGTT 164496 | ||||| || |||| |||| Sbjct 52547 ATATTGTAGCTACTCATGGTT 52567 >seq8630 Length=23577 Score = 111 bits (122), Expect = 2e-19 Identities = 123/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 164412 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACA 164471 ||| |||| ||| ||| ||| || | |||||||| ||||||||||| || ||||| Sbjct 7467 GAACCCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACT 7526 Query 164472 TACAACATTGTT-GCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 || || || || || ||||| ||||| |||||||| | ||||||||||| ||| || Sbjct 7527 TAGAATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTT 7586 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCT 164573 |||||| || ||||| || || ||||| | || || |||||| Sbjct 7587 CAACAATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629 >seq78858 Length=18568 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| ||||| || || || | || ||| Sbjct 929 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGGTTG-TCCGGTCTATTGCTCTTT 987 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| | ||| | || |||||| |||| || | || || | || ||| Sbjct 988 CCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTTGTAACTTCCTGG 1047 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGG-AGGGTGCAAACTTTCTTA 165374 |||||||| || ||||| ||||||||| ||| ||| ||||| ||||||| Sbjct 1048 TATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTA 1095 >seq4835 Length=43218 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 164442 GGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTT 164501 ||||||| ||||||||||| || ||||| || || || || || ||||| ||||| ||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 164502 GGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC----CTTGCACTTCTT 164557 || | | ||||||||||| ||| |||||||| || ||||| || || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 164558 CCTTGCTGCATGGCCT 164573 | || || |||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 >seq13559 Length=16232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 164357 CGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC-GTGAAA 164415 ||| || || |||||||| ||||| |||||| |||| || ||| ||| | || | |||| Sbjct 5672 CGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTA-GCTTGATCAGGGAAA 5614 Query 164416 CCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACA 164475 ||| |||| ||| | || | |||||||| ||||||||||| || |||| || | Sbjct 5613 CCATAGAAAATGAATATGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGAAAACTTAGA 5554 Query 164476 ACATTGTTGCCGCTCACGGTTACTT 164500 | || || || ||||| ||||| || Sbjct 5553 ATATCGTAGCTGCTCATGGTTATTT 5529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554226541113360