Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq5412 347 1e-90 seq8546 210 2e-49 seq59 194 2e-44 seq25216 187 3e-42 seq29420 154 2e-32 seq4835 91.5 2e-13 seq8630 89.7 6e-13 >seq5412 Length=31808 Score = 347 bits (384), Expect = 1e-90 Identities = 499/704 (71%), Gaps = 6/704 (1%) Strand=Plus/Minus Query 168537 GGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCAT 168596 |||| || || || ||||| || ||||| || ||| || | || ||| | || | Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAACATCCGTATTTATTATAGCCT 15224 Query 168597 TTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAA 168656 | |||||||| || || || ||||| || || || | |||||||| || |||| Sbjct 15223 TCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTTC 15164 Query 168657 TGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTAC 168716 | || |||||||| || ||||| ||||| || ||| ||| || || ||| | | Sbjct 15163 TTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTGC 15104 Query 168717 ACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTT 168776 |||| || ||||| |||||||| || | | ||||| |||||||| ||||||||||| | Sbjct 15103 ACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCAT 15044 Query 168777 ACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGG 168836 | || | | | || |||||| || | || | || ||||||||| | |||||| Sbjct 15043 ATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGG 14984 Query 168837 AATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTAT 168896 || | | | | || |||||| | |||||||| |||||| |||||||| || || Sbjct 14983 AACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTTG 14924 Query 168897 CTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTA 168956 | | || ||| || ||| | | |||||| ||||| | || || ||| |||||| Sbjct 14923 CGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGTA 14864 Query 168957 TGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACA 169016 ||||||||||||||||||| || |||||||||||| | |||||||| || |||||||||| Sbjct 14863 TGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACA 14804 Query 169017 TTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCT 169076 | |||||||| || || || ||| ||| ||||| ||| | |||| || | |||||| Sbjct 14803 TCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC- 14745 Query 169077 CCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAAT 169136 | ||||||||| | ||||| || | | ||||| || || || || | |||| Sbjct 14744 -----AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAAT 14690 Query 169137 CTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCAC 169196 || || | ||||||| | | |||||||| ||||| || |||||||| || || || | Sbjct 14689 CTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCTC 14630 Query 169197 ATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAAC 169240 |||| || || || ||||||||||||| ||| | ||||||| Sbjct 14629 ATGGTTATTTTGGCCGATTAATCTTCCAATATNTCAATTTCAAC 14586 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 169343 AACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTA 169402 || || |||||||| || || ||| | | ||| | ||| ||| |||| ||| | Sbjct 14594 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATT 14535 Query 169403 CTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCA 169462 ||||| | | ||||||||||||||||| |||||||| ||||| |||| |||||||| Sbjct 14534 ATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCCCT 14475 Query 169463 CTAGACTTAGCA 169474 || ||| ||||| Sbjct 14474 CTCGACCTAGCA 14463 >seq8546 Length=31398 Score = 210 bits (232), Expect = 2e-49 Identities = 313/442 (71%), Gaps = 8/442 (2%) Strand=Plus/Minus Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 || ||| ||| ||||| ||| | ||||| || || ||||| | ||||||||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 169094 CTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTAC 169153 | ||||| ||| | | ||||| || || || || | |||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 169154 AAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGA 169213 | || |||||||| || ||||| | |||||||| || || ||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 169214 TTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTAGCAG 169271 || |||||||| ||||| ||||||||| | || | |||| || |||||| ||| | Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTC--TCATTCTTTACATTTCTTCTTAGTTG 12967 Query 169272 TGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACT 169331 | || || ||| || ||||||| || || | ||||| |||| |||||||| | | Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907 Query 169332 TGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACAT 169391 | ||||| || || || |||||||| || || ||| | | ||| | ||| | Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----ATT 12851 Query 169392 GGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTC 169451 ||| || | ||||| | || ||||||||||||||||| |||||||| ||||| |||| Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791 Query 169452 ACAACTTCCCACTAGACTTAGC 169473 | ||||||| |||||| |||| Sbjct 12790 ATAACTTCCATCTAGACCTAGC 12769 >seq59 Length=339703 Score = 194 bits (214), Expect = 2e-44 Identities = 197/257 (77%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 168944 TTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAA 169003 || ||||||||||||||||||||| ||||||| || |||||||||||| | |||||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 169004 GCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGT 169063 || ||||||||||| |||||||| || || || ||| | | ||||| ||| | ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 169064 GGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACT 169123 || || |||||| | ||||||||||| | ||||| || | | || || || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 169124 ACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAAT 169183 || || | |||||| || | ||||||| ||| |||||||| ||||| || |||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 169184 ATTGTTGCAGCACATGG 169200 ||||| || | ||||| Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq25216 Length=8180 Score = 187 bits (206), Expect = 3e-42 Identities = 192/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 168854 GGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTA 168913 |||||| | |||||||| | |||| |||||||| || || | || || ||| || Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 168914 TTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCT 168973 ||| | | |||||| ||||||| || || ||||||||||||||||||||||||||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 168974 GGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTC 169033 || || |||||||||||| | |||||||| | ||||||||||| |||||||| || || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 169034 CATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCA 169093 || ||| ||| |||| ||| | ||||| || || |||||| || ||||||||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 169094 CTTGTAACATC 169104 | ||||| || Sbjct 7013 TTGGTAACCTC 7003 >seq29420 Length=7120 Score = 154 bits (170), Expect = 2e-32 Identities = 253/365 (69%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 168601 TGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTA 168660 || ||| || || || ||||| || || || | |||||||| | || |||| | | Sbjct 3412 TGTTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCA 3471 Query 168661 TGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTT 168720 |||||||| || ||||| |||| || |||| |||| || || ||| | ||||| Sbjct 3472 CGGAAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTT 3531 Query 168721 CTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCA 168780 || ||||| |||||||| || | | ||||| |||||||| |||||||||||||| | Sbjct 3532 TTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGA 3591 Query 168781 GTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATT 168840 | | | || |||||| || | || | || ||||||||| | |||||||| | Sbjct 3592 GCTAAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 3651 Query 168841 ATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGC 168900 | | | || |||||| | |||||||| |||||| ||||||| || || | || Sbjct 3652 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGC 3711 Query 168901 AGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCC 168960 || | | | ||| | | |||||| ||||||| || || |||||||||||||| Sbjct 3712 TGCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 3771 Query 168961 TCTAG 168965 ||||| Sbjct 3772 TCTAG 3776 >seq4835 Length=43218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| || |||||||| || ||||| || ||||| || || || ||||| || || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 || ||||| |||||||| ||||| ||||||||||| || Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATC 9156 >seq8630 Length=23577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/99 (81%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTT-GCAGCACATGGATACTT 169206 |||||||| || |||||||| || ||||| || ||||| || || || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 169207 CGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTC 169245 ||| |||| |||||||| ||||| ||||||||||| || Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTC 7595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561706922781120