Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5412 273 3e-68 seq8546 208 9e-49 seq29420 150 2e-31 seq25216 138 1e-27 seq59 129 7e-25 seq1372 109 6e-19 seq67 104 3e-17 >seq5412 Length=31808 Score = 273 bits (302), Expect = 3e-68 Identities = 444/637 (70%), Gaps = 8/637 (1%) Strand=Plus/Minus Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || |||||||| || ||||| || ||||| || || || | ||||| ||| || ||| Sbjct 15227 GCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCT 15168 Query 171982 -TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGG 172040 ||||| || || ||||| || ||||||||||| || ||| | | || ||||| Sbjct 15167 CTTCTT-TACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGG 15109 Query 172041 TCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGG 172100 | | ||||| || || || |||||||| ||| | || ||||||||||| ||||||||||| Sbjct 15108 TTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGG 15049 Query 172101 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACA 172160 ||| ||| || | | | || |||||| | | ||| | | |||||||| | | Sbjct 15048 TCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 14989 Query 172161 GTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACC 172220 ||||||||| | | | | |||||| | || ||||| ||| || |||||||| || Sbjct 14988 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCC 14929 Query 172221 TGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGA 172280 ||| | | || |||||| ||| | | || ||| | ||| | || || ||| | Sbjct 14928 TGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAA 14869 Query 172281 TGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCA 172340 ||||||||| ||||| || || ||||| |||||||| ||| | || ||||| || ||||| Sbjct 14868 TGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCA 14809 Query 172341 TAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTT 172400 ||||| || ||||| || || |||||| ||| ||||| || | || | || | | Sbjct 14808 CAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCT 14749 Query 172401 ATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGC 172460 |||| | ||| |||||||| || || || | | ||||| || || || ||| Sbjct 14748 ATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAA 14695 Query 172461 AGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGC 172520 ||||| || | || |||| | | || ||||| ||||| || || || || ||||| Sbjct 14694 TGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGC 14635 Query 172521 AGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 172557 || || ||||| ||||| || | |||||||| ||| Sbjct 14634 TGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 172670 TCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACG 172729 |||| ||||||||||| || || ||| | | ||| | || ||| |||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 172730 TTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCC 172789 || ||||| | | ||||| ||||||||||||||||||||| | ||||| | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 172790 CATTAGACCTTGC 172802 | | ||||| || Sbjct 14476 CTCTCGACCTAGC 14464 >seq8546 Length=31398 Score = 208 bits (230), Expect = 9e-49 Identities = 316/446 (71%), Gaps = 8/446 (2%) Strand=Plus/Minus Query 172363 CACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCT 172422 |||||| ||| ||||| || | || || || || ||||| | ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 172423 TTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATAC 172482 || || || ||| | | ||||| || || || ||| |||| || | || ||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 172483 AAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGT 172542 | || || ||||| || ||||| | || || ||||| || || ||||| ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 172543 CTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCAC--TTCTTCCTAGCAG 172600 | |||||||| |||||| ||||||| | || | |||| || |||||| ||| | Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTC--ATTCTTTACATTTCTTCTTAGTTG 12967 Query 172601 TTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 172660 || ||||| ||| || ||||||| || || | ||||| |||| |||||||| | || Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907 Query 172661 TTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACAT 172720 | ||||| ||||| ||||||||||| || || ||| | | ||| ||| || | Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGT---CGTGTAATTA-TT 12851 Query 172721 GGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCAC 172780 ||| || || ||||| | || ||||| ||||||||||||||||||||| | ||||| | Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791 Query 172781 ACAACTTCCCATTAGACCTTGCTTCT 172806 | ||||||| ||||||| ||| || Sbjct 12790 ATAACTTCCATCTAGACCTAGCTGCT 12765 >seq29420 Length=7120 Score = 150 bits (166), Expect = 2e-31 Identities = 252/362 (70%), Gaps = 2/362 (1%) Strand=Plus/Plus Query 171934 GCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGG 171992 || ||||| || ||||| || || || | ||||| ||| | || ||| ||||| | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTC-ACGG 3474 Query 171993 TAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTA 172052 ||||| || |||||||||| || |||| | || || |||||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 172053 CCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTT 172112 || || |||||||| ||| | || ||||||||||| |||||||||||||||||| || | Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 172113 GGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATC 172172 | || |||||| | | ||| | | |||||||| | |||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 172173 ATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGC 172232 | | | | |||||| | || ||||| ||| || ||||||| ||||| | || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 172233 ATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACT 172292 | || | ||| | | || ||| | ||||| || || |||||||||||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 Query 172293 AG 172294 || Sbjct 3775 AG 3776 >seq25216 Length=8180 Score = 138 bits (152), Expect = 1e-27 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 || |||||| | || ||||| | | || |||||||| ||||| | || || |||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| | || ||||| | ||||| ||||| || ||||| || Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| ||| |||| || | || || || || ||||| || ||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 172420 TCTTTAGTTACATC 172433 ||||| || || || Sbjct 7016 TCTTTGGTAACCTC 7003 >seq59 Length=339703 Score = 129 bits (142), Expect = 7e-25 Identities = 184/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| ||||| | || ||||| |||||||| ||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392 || ||||| ||||| || ||||| || || |||||| | | ||||| || | || || Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452 || || ||||| | ||||| |||||||| || || || | | || || || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 172453 ACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAAC 172512 || ||| ||||| || | || |||| ||| || ||||| ||||| || || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 172513 ATAGTAGCAGCACACGGTT 172531 || ||||| | || |||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq1372 Length=73576 Score = 109 bits (120), Expect = 6e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 || |||||| ||||||| || |||||||| || ||||||||||| |||||||||||| Sbjct 58395 GAAAATCCTGGTTGGTATACTCAGTACACTCCTTACCAAGCTGAGATCTCTCAGGGAAGA 58454 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 |||||| | |||| ||||| ||||| | || || || || || ||| | || || | Sbjct 58455 TTGGAATCCCTATTGAATTATCAAACCATGATTACGGATCTTACCGGATTGCCTATGTCT 58514 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || ||| | | ||||||| || ||||| || || || ||| Sbjct 58515 AATGCTTCTTTGCTTGATGAAGGCACAGCAGCGGCCGAGGCTATG 58559 Score = 100 bits (110), Expect = 3e-16 Identities = 172/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 158407 GGTGAG--TGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGG 158464 |||||| ||||| | ||||| || || ||| | || ||||||||| | ||||||| Sbjct 58860 GGTGAGCTTGGGGCT--GACATAGCGGTCGGTTCTGCTCAGAGGTTTGGTGTACCTATGG 58917 Query 158465 GATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATAC 158524 | || || ||||||||||| || ||||| || || | | |||||||||| ||| | Sbjct 58918 GGTATGGTGGTCCTCATGCCGCTTTCTTGGCTACTTCTCAAGAGTATAAGAGGTTGATGC 58977 Query 158525 CTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGC 158582 | || || ||| | | || ||| || ||| |||||| | || | | | || Sbjct 58978 CCGGGAGGATTATTGGAGTTAGT--GTTGATTCGTCAGGTAAGCATGCTTTACGTATGGC 59035 Query 158583 ACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGC 158642 | ||||| || ||||| |||||||| |||||||| || || || |||||||| || || Sbjct 59036 TATGCAGACAAGGGAGCAACATATCAGGAGAGACAAGGCTACAAGCAACATCTGTACTGC 59095 Query 158643 ACAAGC 158648 || || Sbjct 59096 TCANGC 59101 >seq67 Length=256564 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| ||||||| || |||||||| || ||||||||||| ||||| |||||| Sbjct 184330 GAGAATCCTGGTTGGTATACTCAATACACTCCTTACCAAGCTGAGATCTCTCAAGGAAGA 184271 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 |||||| | |||| || || ||||| | || || || || || ||| | || || | Sbjct 184270 TTGGAATCCCTATTGAACTATCAAACCATGATTACGGATCTTACTGGATTGCCTATGTCG 184211 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || ||| | | ||||||| || ||||| || || || ||| Sbjct 184210 AATGCTTCTTTGCTTGATGAAGGCACAGCAGCGGCCGAGGCTATG 184166 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 159694 GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGA 159753 || |||||||| || ||||| ||| |||| |||||||| || ||||| ||||| ||||| Sbjct 180339 GGAGCAGATGTCTGCCATCTTAACCTACACAAGACATTTTGCATTCCCCATGGCGGTGGT 180280 Query 159754 GGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || | || ||||||||||| Sbjct 180279 GGTCCCGGTATGGGCCCTATTGGTGT 180254 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 159554 TTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTG 159613 |||||||||||||||| ||||| || | |||| | ||| | || || || || Sbjct 181292 TTACATATCCATCTACCCATGGGGTTTATGAAGAAGGGATCGATGAAATCTGCAAAATAA 181233 Query 159614 TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668 ||||||| |||||||| || || ||| | ||||||||||| | ||||||||||| Sbjct 181232 TTCATGATAATGGTGGCCAAGTTTATATGGATGGTGCAAACATGAATGCACAGGT 181178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585202136039840