Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq5412 329 4e-85 seq8546 223 4e-53 seq25216 163 3e-35 seq3927 150 2e-31 seq59 150 2e-31 seq8630 105 7e-18 seq4835 82.4 8e-11 >seq5412 Length=31808 Score = 329 bits (364), Expect = 4e-85 Identities = 490/693 (71%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 162431 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCC 162489 |||| ||||| |||||||||| || | ||| | ||||| ||| || || || | ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 162490 TTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 162549 ||| | |||||||| || || || || || || || |||||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 162550 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTT 162609 | || || ||||| || ||||||||||| || ||| ||| || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 162610 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 162669 ||||| ||||| || |||||||| ||||| ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 162670 TTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGG 162729 | | || | || || |||||| | | || | | |||||||| ||||| ||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 162730 GAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTT 162789 ||||| || |||||| |||||||| || ||||| || || || || || |||||| Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 162790 GCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 162849 || | || | || || ||| || |||| || | ||| |||| || ||| | | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909 ||||| | || || |||||| ||||||| |||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 162969 || || ||||| || || |||||||| || || || ||||| |||| || | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 162970 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163029 || ||| ||||||||||| || || | || | || || || |||| ||| Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 163030 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCC 163089 || || | ||||||| | | |||||||| |||||||| || || ||||| || || Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 163090 CATGGTTACTTCGGTCGTTTGATCTTCCAATAT 163122 |||||||| || || || || |||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 163235 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACG 163294 |||| |||||||| || | ||||| |||| |||||||| | || || ||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 163295 TTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCC 163354 || | ||||| | | ||||||||||||||||| || || ||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 163355 CACTTGACCTGGCAGC 163370 | || ||||| ||||| Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 223 bits (246), Expect = 4e-53 Identities = 316/444 (71%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 162928 CACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCT 162987 |||||||| || || || ||||| ||||| || || | ||||||| ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 162988 TTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTAC 163047 ||||| || ||| | || | || || || |||| | | || || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 163048 AAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGT 163107 | || |||||||| || || || | || || || || || |||||||| || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 163108 TTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 163167 || |||||||||||||| |||||| | || | ||| || || |||||| | | ||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 163168 TGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTG 163227 |||||||| || || || ||||| || | | || | || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 163228 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 163287 ||||| ||||| |||||||| || | ||||| |||| |||||||| || ||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849 Query 163288 GCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCAC 163347 || || || | ||||| || | ||||||||||||||||| || || |||||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 163348 AACTTCCCACTTGACCTGGCAGCT 163371 ||||||| || ||||| || ||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 163 bits (180), Expect = 3e-35 Identities = 190/254 (75%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 162746 TTGGTATGCGTCCATGGATCTGCG-TAGCATACTCTGCACCTGTTGCAGCAGCATCGGCA 162804 |||||||||| || ||||| ||| | || || || || |||||||| || || | || Sbjct 7255 TTGGTATGCGCCCTTGGAT-TGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 162805 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATC 162864 || ||| || |||| || | |||||||| || ||||| | ||||| | || || Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 162865 AGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCC 162924 |||||| ||||||| |||| |||| ||||| | ||||||||||| || ||||| || Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 162925 TTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 162984 || |||||||| || || | ||||| ||||| || || || |||||||| ||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 162985 TCTTTGGTTACATC 162998 |||||||| || || Sbjct 7016 TCTTTGGTAACCTC 7003 >seq3927 Length=49767 Score = 150 bits (166), Expect = 2e-31 Identities = 187/252 (74%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 163909 TGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTT 163968 |||| |||||| || ||||| || || |||| || || ||||| ||| | || |||||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 163969 GAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTAT 164027 ||||||||||| ||| || | | |||| || ||||| || || || | |||||| || Sbjct 26067 GAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 164028 TGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGC 164087 ||| | || ||| || ||||| || || || || ||||| || |||||||||| || Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 164088 TCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAA 164147 || |||||| || ||| | || ||| ||||| || | || ||||||| |||||||| Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATTC-GATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 164148 CTGGACTTTGAA 164159 ||||| ||||| Sbjct 26245 TTGGACATTGAA 26256 >seq59 Length=339703 Score = 150 bits (166), Expect = 2e-31 Identities = 192/261 (74%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 162838 TTCTCTGACGCAATGCC-CTTGG-GTATCAGTGGTACATTCAACTACATGCTTGTCTTCC 162895 || ||||| | ||||| || || || || |||||| ||||||| |||| |||| |||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTC--TGGTACTTTCAACTTCATGATTGTATTCC 52366 Query 162896 AAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCG 162955 | || ||||||||||| || ||||| || || |||||||| | || || ||||| |||| Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426 Query 162956 GTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGA 163015 | || || || ||||||| ||||| ||||||||||| || || | | | || | Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486 Query 163016 CGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACA 163075 | || |||| ||| || || | ||||||| ||| |||||||| |||||||| || | Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546 Query 163076 ACATCGTCGCAGCCCATGGTT 163096 | || || || | ||||||| Sbjct 52547 ATATTGTAGCTACTCATGGTT 52567 >seq8630 Length=23577 Score = 105 bits (116), Expect = 7e-18 Identities = 104/133 (78%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGT-CGCAGCCCATGGTTACTT 163100 |||||||| || |||||||| || || || || || ||||| ||| || |||||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 163101 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 163160 ||||| || |||||||||||||| |||||||| || ||||| || || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 163161 TGCTGCATGGCCT 163173 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq4835 Length=43218 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 ||||||| || |||||||| || || || || || ||||| || || |||||||| || Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC----CTTGCACTTCTT 163157 || | || |||||||||||||| |||||||| || ||||| || || ||||| Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178 Query 163158 CCTTGCTGCATGGCCT 163173 | || || |||||| Sbjct 9179 ATTAGCCGCTTGGCCT 9194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554882547338800