Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 329 4e-85
seq8546 223 4e-53
seq25216 163 3e-35
seq3927 150 2e-31
seq59 150 2e-31
seq8630 105 7e-18
seq4835 82.4 8e-11
>seq5412
Length=31808
Score = 329 bits (364), Expect = 4e-85
Identities = 490/693 (71%), Gaps = 8/693 (1%)
Strand=Plus/Minus
Query 162431 GGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCC 162489
|||| ||||| |||||||||| || | ||| | ||||| ||| || || || | |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 162490 TTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 162549
||| | |||||||| || || || || || || || |||||||| || ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 162550 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTT 162609
| || || ||||| || ||||||||||| || ||| ||| || || ||| |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 162610 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 162669
||||| ||||| || |||||||| ||||| ||||||| ||| | || || ||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 162670 TTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGG 162729
| | || | || || |||||| | | || | | |||||||| ||||| |||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 162730 GAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTT 162789
||||| || |||||| |||||||| || ||||| || || || || || ||||||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 162790 GCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCA 162849
|| | || | || || ||| || |||| || | ||| |||| || ||| | |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909
||||| | || || |||||| ||||||| |||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTC 162969
|| || ||||| || || |||||||| || || || ||||| |||| || | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 162970 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAG 163029
|| ||| ||||||||||| || || | || | || || || |||| |||
Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 163030 TCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCC 163089
|| || | ||||||| | | |||||||| |||||||| || || ||||| || ||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 163090 CATGGTTACTTCGGTCGTTTGATCTTCCAATAT 163122
|||||||| || || || || ||||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATAT 14598
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 163235 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACG 163294
|||| |||||||| || | ||||| |||| |||||||| | || || ||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 163295 TTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCC 163354
|| | ||||| | | ||||||||||||||||| || || ||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 163355 CACTTGACCTGGCAGC 163370
| || ||||| |||||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq8546
Length=31398
Score = 223 bits (246), Expect = 4e-53
Identities = 316/444 (71%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 162928 CACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCT 162987
|||||||| || || || ||||| ||||| || || | ||||||| ||||| ||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 162988 TTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTAC 163047
||||| || ||| | || | || || || |||| | | || || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 163048 AAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGT 163107
| || |||||||| || || || | || || || || || |||||||| || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 163108 TTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 163167
|| |||||||||||||| |||||| | || | ||| || || |||||| | | |||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 163168 TGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTG 163227
|||||||| || || || ||||| || | | || | || |||||||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 163228 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGG 163287
||||| ||||| |||||||| || | ||||| |||| |||||||| || |||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT----AATTATTGG 12849
Query 163288 GCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCAC 163347
|| || || | ||||| || | ||||||||||||||||| || || ||||||||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 163348 AACTTCCCACTTGACCTGGCAGCT 163371
||||||| || ||||| || |||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq25216
Length=8180
Score = 163 bits (180), Expect = 3e-35
Identities = 190/254 (75%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 162746 TTGGTATGCGTCCATGGATCTGCG-TAGCATACTCTGCACCTGTTGCAGCAGCATCGGCA 162804
|||||||||| || ||||| ||| | || || || || |||||||| || || | ||
Sbjct 7255 TTGGTATGCGCCCTTGGAT-TGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197
Query 162805 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATC 162864
|| ||| || |||| || | |||||||| || ||||| | ||||| | || ||
Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137
Query 162865 AGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCC 162924
|||||| ||||||| |||| |||| ||||| | ||||||||||| || ||||| ||
Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077
Query 162925 TTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGT 162984
|| |||||||| || || | ||||| ||||| || || || |||||||| ||||| |||
Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017
Query 162985 TCTTTGGTTACATC 162998
|||||||| || ||
Sbjct 7016 TCTTTGGTAACCTC 7003
>seq3927
Length=49767
Score = 150 bits (166), Expect = 2e-31
Identities = 187/252 (74%), Gaps = 3/252 (1%)
Strand=Plus/Plus
Query 163909 TGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTT 163968
|||| |||||| || ||||| || || |||| || || ||||| ||| | || ||||||
Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066
Query 163969 GAACTTGCTCG-CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTAT 164027
||||||||||| ||| || | | |||| || ||||| || || || | |||||| ||
Sbjct 26067 GAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125
Query 164028 TGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGC 164087
||| | || ||| || ||||| || || || || ||||| || |||||||||| ||
Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185
Query 164088 TCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAA 164147
|| |||||| || ||| | || ||| ||||| || | || ||||||| ||||||||
Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATTC-GATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244
Query 164148 CTGGACTTTGAA 164159
||||| |||||
Sbjct 26245 TTGGACATTGAA 26256
>seq59
Length=339703
Score = 150 bits (166), Expect = 2e-31
Identities = 192/261 (74%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 162838 TTCTCTGACGCAATGCC-CTTGG-GTATCAGTGGTACATTCAACTACATGCTTGTCTTCC 162895
|| ||||| | ||||| || || || || |||||| ||||||| |||| |||| ||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTC--TGGTACTTTCAACTTCATGATTGTATTCC 52366
Query 162896 AAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCG 162955
| || ||||||||||| || ||||| || || |||||||| | || || ||||| ||||
Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426
Query 162956 GTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGA 163015
| || || || ||||||| ||||| ||||||||||| || || | | | || |
Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486
Query 163016 CGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACA 163075
| || |||| ||| || || | ||||||| ||| |||||||| |||||||| || |
Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546
Query 163076 ACATCGTCGCAGCCCATGGTT 163096
| || || || | |||||||
Sbjct 52547 ATATTGTAGCTACTCATGGTT 52567
>seq8630
Length=23577
Score = 105 bits (116), Expect = 7e-18
Identities = 104/133 (78%), Gaps = 1/133 (1%)
Strand=Plus/Plus
Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGT-CGCAGCCCATGGTTACTT 163100
|||||||| || |||||||| || || || || || ||||| ||| || |||||||| ||
Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556
Query 163101 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 163160
||||| || |||||||||||||| |||||||| || ||||| || || ||||| |
Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616
Query 163161 TGCTGCATGGCCT 163173
|| || ||||||
Sbjct 7617 AGCCGCTTGGCCT 7629
>seq4835
Length=43218
Score = 82.4 bits (90), Expect = 8e-11
Identities = 100/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101
||||||| || |||||||| || || || || || ||||| || || |||||||| ||
Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118
Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC----CTTGCACTTCTT 163157
|| | || |||||||||||||| |||||||| || ||||| || || |||||
Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATCTCGTTCTTTAATTACATTTCTT 9178
Query 163158 CCTTGCTGCATGGCCT 163173
| || || ||||||
Sbjct 9179 ATTAGCCGCTTGGCCT 9194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 554882547338800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |