Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07]
387,594 sequences; 1,177,687,305 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq5412 417 9e-112
seq59 206 3e-48
seq29420 203 4e-47
seq8546 199 4e-46
seq25216 197 2e-45
seq8630 102 9e-17
seq78858 95.1 1e-14
seq13559 93.3 5e-14
seq8085 82.4 9e-11
>seq5412
Length=31808
Score = 417 bits (462), Expect = 9e-112
Identities = 509/692 (74%), Gaps = 8/692 (1%)
Strand=Plus/Minus
Query 167134 GGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCC 167192
|||| |||||| ||||||| ||||| || | | ||||| ||| || || || || |||
Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225
Query 167193 TTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTC 167252
||| | | ||||||||| || || || |||||||| || ||||| ||| ||| || ||
Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165
Query 167253 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTT 167312
| || || ||||| || ||||||||||| || ||| ||| | |||||| ||| |
Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105
Query 167313 CACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCT 167372
||||| ||||| || |||||||| ||| | | || || ||||| ||||||||||||||
Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045
Query 167373 TTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGG 167432
| | || | ||||| |||||| | |||| | | || |||||||||||||||
Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985
Query 167433 GAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTC 167492
||||| || |||||| |||||||| || ||||| |||||| || || || || ||
Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925
Query 167493 GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCG 167552
|| | || ||||||| ||| | |||| || | ||| |||| || ||| | |
Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865
Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612
|||||||| || || |||||||| ||||||| |||| |||| ||||| || |||||||||
Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805
Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTC 167672
||||| |||||||| || || ||| | ||||| ||||| ||||||| ||| | || |||
Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745
Query 167673 AGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAG 167732
|| ||| |||||| |||| ||||| || | | |||||||| |||| |||
Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691
Query 167733 TCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCT 167792
|| || | ||||||| | | ||||| || |||||||| ||||| ||||| ||||||
Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631
Query 167793 CATGGTTACTTCGGTCGCCTGATCTTCCAATA 167824
|||||||| || || || | |||||||||||
Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599
Score = 93.3 bits (102), Expect = 5e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 167938 TCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACG 167997
|||| |||||||| ||| | |||||||| ||| || | ||||||||| ||
Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537
Query 167998 TGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 168057
| | ||||| || || ||||||||||||||||| || |||||||||| |||||||
Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477
Query 168058 CTCTCGACCTTGCTGC 168073
|||||||||| || ||
Sbjct 14476 CTCTCGACCTAGCAGC 14461
>seq59
Length=339703
Score = 206 bits (228), Expect = 3e-48
Identities = 201/259 (78%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 167541 TTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAA 167600
|| ||||| | |||||||| || | |||||||| ||||||| |||| |||| |||||
Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368
Query 167601 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGC 167660
|| |||||||||||||| |||||||| || || ||| | |||| ||||| |||||||||
Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428
Query 167661 GGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACC 167720
|| || || ||||||| ||||| |||||| |||| ||||| || || | ||||||
Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488
Query 167721 ACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAAC 167780
|| |||| ||| || || | ||||||| ||| ||||| || |||||||| |||||
Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548
Query 167781 ATCGTCGCTGCTCATGGTT 167799
|| || ||| |||||||||
Sbjct 52549 ATTGTAGCTACTCATGGTT 52567
>seq29420
Length=7120
Score = 203 bits (224), Expect = 4e-47
Identities = 261/360 (73%), Gaps = 0/360 (0%)
Strand=Plus/Plus
Query 167201 TGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGG 167260
||||||||| || || || |||||||| || ||||| ||| |||| || || | | ||
Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474
Query 167261 TAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTA 167320
||||| || |||||||||| || |||| ||||| |||||| ||| | ||||| ||
Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534
Query 167321 TCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACT 167380
||| || |||||||| ||| | | || || ||||| |||||||||||||||| | ||
Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594
Query 167381 CGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTC 167440
||||| |||||| | |||| | | || ||||||||||||||||||||
Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654
Query 167441 TTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGC 167500
|| |||||| |||||||| || ||||| |||||| || || | ||| || || || ||
Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714
Query 167501 ATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCT 167560
|| || | ||| | |||| || | |||||||| || ||||| | ||||||||
Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774
>seq8546
Length=31398
Score = 199 bits (220), Expect = 4e-46
Identities = 306/444 (69%), Gaps = 4/444 (1%)
Strand=Plus/Minus
Query 167631 CATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCT 167690
|| ||| | ||||| ||||| ||||||||||| || | ||||||| ||||| ||||||
Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145
Query 167691 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTAC 167750
|||| |||||| || | | |||||||| |||| | | ||| || | ||||||
Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085
Query 167751 AAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGC 167810
| || ||||| || || || || | || || || |||||||||||||| || || ||
Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025
Query 167811 CTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCA 167870
| ||||||||||| || |||||| | || | || | || |||||||| | ||
Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965
Query 167871 TGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTG 167930
|||||||| || ||||| |||| ||| | |||
Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905
Query 167931 AACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGG 167990
||||| ||||| |||||||| ||| | |||||||| ||| || | || ||||
Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT---TA-TTGG 12849
Query 167991 GCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 168050
|| || | | ||||| ||| || ||||||||||||||||| || |||||||||||
Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789
Query 168051 AACTTCCCTCTCGACCTTGCTGCT 168074
||||||| ||| ||||| ||||||
Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765
>seq25216
Length=8180
Score = 197 bits (218), Expect = 2e-45
Identities = 215/284 (76%), Gaps = 1/284 (0%)
Strand=Plus/Minus
Query 167451 GGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 167510
|||||||| || ||||| | |||| || || ||||| || || || || |||||||
Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194
Query 167511 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCT 167570
||| | |||| || | |||||||| || ||||| | |||||||| || || |||
Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134
Query 167571 GGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTC 167630
||||| ||||||| |||| |||| ||||| | |||||||||||||| |||||||| ||
Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074
Query 167631 CATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCT 167690
|| ||| | ||||| | ||| ||||||||||| || || |||||||| ||||| ||||||
Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014
Query 167691 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTC 167734
|||| ||||| | | | || |||||||| ||| ||| ||
Sbjct 7013 TTGGTAACCTC-GAGTTTGATCAGGAAACCACATAAAATGAATC 6971
>seq8630
Length=23577
Score = 102 bits (112), Expect = 9e-17
Identities = 121/163 (74%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 167715 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACG 167774
||| |||| ||| ||| ||| || | |||||||| || ||||| || || || ||
Sbjct 7467 GAACCCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACT 7526
Query 167775 TATAACATCGT-CGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTT 167833
|| || ||||| ||||||||||||||| || ||||| | ||||||||||| || ||
Sbjct 7527 TAGAATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTT 7586
Query 167834 CAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCT 167876
|||||| || || || | || ||||| || || || ||||||
Sbjct 7587 CAACAATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629
>seq78858
Length=18568
Score = 95.1 bits (104), Expect = 1e-14
Identities = 125/170 (74%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554
||||||||| | |||| |||||||||||||| ||||| || || || | || |||
Sbjct 929 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGGTTG-TCCGGTCTATTGCTCTTT 987
Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614
|| ||| ||| | ||| | || |||||| |||| || | | || || || |||
Sbjct 988 CCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTTGTAACTTCCTGG 1047
Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA 168663
|||||||| || ||||| ||||||||| |||| ||| |||| |||||||
Sbjct 1048 TATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTA 1095
>seq13559
Length=16232
Score = 93.3 bits (102), Expect = 5e-14
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 167660 CGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTC-GTGAAA 167718
||| || || |||||||| ||||| |||||| |||| |||||| ||| | || | ||||
Sbjct 5672 CGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTA-GCTTGATCAGGGAAA 5614
Query 167719 CCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATA 167778
||| |||| ||| | || | |||||||| || ||||| || || | || || |
Sbjct 5613 CCATAGAAAATGAATATGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGAAAACTTAGA 5554
Query 167779 ACATCGTCGCTGCTCATGGTTACTTCGGTC 167808
| ||||| |||||||||||||| |||| ||
Sbjct 5553 ATATCGTAGCTGCTCATGGTTATTTCGATC 5524
>seq8085
Length=24635
Score = 82.4 bits (90), Expect = 9e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276
|| ||||||||||| ||||| ||| |||| || || | || || ||||| || |||||
Sbjct 19924 ATTGATGGTATCCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTTTCTCT 19865
Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336
||| | || |||| ||||| |||||| ||| | || || ||||| || |||| ||||
Sbjct 19864 GGTTCCATTATTCCGACTTCTGCTGCTATAGGTTTGCAATTTTATCCAATGTGGGTAGCA 19805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557891896285600
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