Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq5412 417 9e-112 seq59 206 3e-48 seq29420 203 4e-47 seq8546 199 4e-46 seq25216 197 2e-45 seq8630 102 9e-17 seq78858 95.1 1e-14 seq13559 93.3 5e-14 seq8085 82.4 9e-11 >seq5412 Length=31808 Score = 417 bits (462), Expect = 9e-112 Identities = 509/692 (74%), Gaps = 8/692 (1%) Strand=Plus/Minus Query 167134 GGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCC 167192 |||| |||||| ||||||| ||||| || | | ||||| ||| || || || || ||| Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 167193 TTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTC 167252 ||| | | ||||||||| || || || |||||||| || ||||| ||| ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 167253 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTT 167312 | || || ||||| || ||||||||||| || ||| ||| | |||||| ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 167313 CACTTCTATCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCT 167372 ||||| ||||| || |||||||| ||| | | || || ||||| |||||||||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 167373 TTCCAACTCGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGG 167432 | | || | ||||| |||||| | |||| | | || ||||||||||||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 14985 Query 167433 GAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTC 167492 ||||| || |||||| |||||||| || ||||| |||||| || || || || || Sbjct 14984 GAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCTGTT 14925 Query 167493 GCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCG 167552 || | || ||||||| ||| | |||| || | ||| |||| || ||| | | Sbjct 14924 GCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAATGGT 14865 Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612 |||||||| || || |||||||| ||||||| |||| |||| ||||| || ||||||||| Sbjct 14864 ATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 14805 Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTC 167672 ||||| |||||||| || || ||| | ||||| ||||| ||||||| ||| | || ||| Sbjct 14804 ATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTATTC 14745 Query 167673 AGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAG 167732 || ||| |||||| |||| ||||| || | | |||||||| |||| ||| Sbjct 14744 AG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAATGAA 14691 Query 167733 TCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCT 167792 || || | ||||||| | | ||||| || |||||||| ||||| ||||| |||||| Sbjct 14690 TCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCTGCT 14631 Query 167793 CATGGTTACTTCGGTCGCCTGATCTTCCAATA 167824 |||||||| || || || | ||||||||||| Sbjct 14630 CATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 167938 TCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACG 167997 |||| |||||||| ||| | |||||||| ||| || | ||||||||| || Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 167998 TGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCC 168057 | | ||||| || || ||||||||||||||||| || |||||||||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 168058 CTCTCGACCTTGCTGC 168073 |||||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq59 Length=339703 Score = 206 bits (228), Expect = 3e-48 Identities = 201/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 167541 TTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAA 167600 || ||||| | |||||||| || | |||||||| ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 167601 GCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGC 167660 || |||||||||||||| |||||||| || || ||| | |||| ||||| ||||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 167661 GGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACC 167720 || || || ||||||| ||||| |||||| |||| ||||| || || | |||||| Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 167721 ACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATAAC 167780 || |||| ||| || || | ||||||| ||| ||||| || |||||||| ||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 167781 ATCGTCGCTGCTCATGGTT 167799 || || ||| ||||||||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq29420 Length=7120 Score = 203 bits (224), Expect = 4e-47 Identities = 261/360 (73%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 167201 TGCTCCTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGG 167260 ||||||||| || || || |||||||| || ||||| ||| |||| || || | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 167261 TAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTA 167320 ||||| || |||||||||| || |||| ||||| |||||| ||| | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 167321 TCCCATCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACT 167380 ||| || |||||||| ||| | | || || ||||| |||||||||||||||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 167381 CGTAGTTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTC 167440 ||||| |||||| | |||| | | || |||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 167441 TTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGC 167500 || |||||| |||||||| || ||||| |||||| || || | ||| || || || || Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 167501 ATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCT 167560 || || | ||| | |||| || | |||||||| || ||||| | |||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq8546 Length=31398 Score = 199 bits (220), Expect = 4e-46 Identities = 306/444 (69%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 167631 CATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCT 167690 || ||| | ||||| ||||| ||||||||||| || | ||||||| ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 167691 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTAC 167750 |||| |||||| || | | |||||||| |||| | | ||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 167751 AAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGC 167810 | || ||||| || || || || | || || || |||||||||||||| || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 167811 CTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCA 167870 | ||||||||||| || |||||| | || | || | || |||||||| | || Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 167871 TGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTG 167930 |||||||| || ||||| |||| ||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 167931 AACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGG 167990 ||||| ||||| |||||||| ||| | |||||||| ||| || | || |||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT---TA-TTGG 12849 Query 167991 GCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 168050 || || | | ||||| ||| || ||||||||||||||||| || ||||||||||| Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 168051 AACTTCCCTCTCGACCTTGCTGCT 168074 ||||||| ||| ||||| |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 197 bits (218), Expect = 2e-45 Identities = 215/284 (76%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 167451 GGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTA 167510 |||||||| || ||||| | |||| || || ||||| || || || || ||||||| Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 167511 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCT 167570 ||| | |||| || | |||||||| || ||||| | |||||||| || || ||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 167571 GGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTC 167630 ||||| ||||||| |||| |||| ||||| | |||||||||||||| |||||||| || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 167631 CATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCT 167690 || ||| | ||||| | ||| ||||||||||| || || |||||||| ||||| |||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCT 7014 Query 167691 CTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTC 167734 |||| ||||| | | | || |||||||| ||| ||| || Sbjct 7013 TTGGTAACCTC-GAGTTTGATCAGGAAACCACATAAAATGAATC 6971 >seq8630 Length=23577 Score = 102 bits (112), Expect = 9e-17 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 167715 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACG 167774 ||| |||| ||| ||| ||| || | |||||||| || ||||| || || || || Sbjct 7467 GAACCCACATAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGGAAACT 7526 Query 167775 TATAACATCGT-CGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTT 167833 || || ||||| ||||||||||||||| || ||||| | ||||||||||| || || Sbjct 7527 TAGAATATCGTACGCTGCTCATGGTTATTTTGGTCGATTCATCTTCCAATATGCTAGTTT 7586 Query 167834 CAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCT 167876 |||||| || || || | || ||||| || || || |||||| Sbjct 7587 CAACAATTCTCGTTCTTTACATTTCTTATTAGCCGCTTGGCCT 7629 >seq78858 Length=18568 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| ||||| || || || | || ||| Sbjct 929 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTCGGTTG-TCCGGTCTATTGCTCTTT 987 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| |||| || | | || || || ||| Sbjct 988 CCGTGTGCGTATTTCGCTGTAGGAGGTTGGTTTACGGGTTCAACCTTTGTAACTTCCTGG 1047 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA 168663 |||||||| || ||||| ||||||||| |||| ||| |||| ||||||| Sbjct 1048 TATACTCATGGTTTGGCCAGTTCCTATTTGGAAGGCTGCAA--TTTCTTA 1095 >seq13559 Length=16232 Score = 93.3 bits (102), Expect = 5e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 167660 CGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTC-GTGAAA 167718 ||| || || |||||||| ||||| |||||| |||| |||||| ||| | || | |||| Sbjct 5672 CGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTA-GCTTGATCAGGGAAA 5614 Query 167719 CCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGTATA 167778 ||| |||| ||| | || | |||||||| || ||||| || || | || || | Sbjct 5613 CCATAGAAAATGAATATGCTAATGAAGGTTACAAATTTGGTCAAGAGGAGAAAACTTAGA 5554 Query 167779 ACATCGTCGCTGCTCATGGTTACTTCGGTC 167808 | ||||| |||||||||||||| |||| || Sbjct 5553 ATATCGTAGCTGCTCATGGTTATTTCGATC 5524 >seq8085 Length=24635 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276 || ||||||||||| ||||| ||| |||| || || | || || ||||| || ||||| Sbjct 19924 ATTGATGGTATCCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTTTCTCT 19865 Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336 ||| | || |||| ||||| |||||| ||| | || || ||||| || |||| |||| Sbjct 19864 GGTTCCATTATTCCGACTTCTGCTGCTATAGGTTTGCAATTTTATCCAATGTGGGTAGCA 19805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557891896285600