Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq5412 311 1e-79 seq8546 190 3e-43 seq25216 176 7e-39 seq59 174 2e-38 seq29420 127 3e-24 seq8630 98.7 1e-15 seq4835 91.5 2e-13 >seq5412 Length=31808 Score = 311 bits (344), Expect = 1e-79 Identities = 451/637 (71%), Gaps = 6/637 (1%) Strand=Plus/Minus Query 215394 TAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTT 215453 |||| ||||| ||||| ||||| || ||||| || || || | || || ||| ||| | Sbjct 15229 TAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGAT 15170 Query 215454 CTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCG 215513 || | | || || ||||| || ||||||||||| || | | | || || || | Sbjct 15169 CTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAG 15110 Query 215514 GATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTG 215573 | || ||||| || || || |||||||| ||| | ||||| |||||| | |||||||||| Sbjct 15109 GTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTG 15050 Query 215574 GACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGAC 215633 | || | | || || | || |||||| | ||||| | || ||| || | Sbjct 15049 GTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTG 14990 Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | |||||| | |||||||| |||||| || || || | Sbjct 14989 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCC 14930 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | |||| ||| || ||| | | || ||| | ||| | || || ||| Sbjct 14929 CTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTA 14870 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| || ||||| ||||| || ||||||| |||| |||| ||||||||||||| Sbjct 14869 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 14810 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 ||||||| || ||||||||||| ||||||||||| || |||||||| |||| || | Sbjct 14809 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACC 14750 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGC 215933 | ||| | ||| ||||| | || || || | | ||||| || || || || Sbjct 14749 TATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAA 14696 Query 215934 AAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAG 215993 | |||||| || | ||||||| | | || |||||||| || || || || ||||||| Sbjct 14695 ATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAG 14636 Query 215994 CTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATA 216030 |||| || ||||| ||||| || | ||||||||||| Sbjct 14635 CTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 >seq8546 Length=31398 Score = 190 bits (210), Expect = 3e-43 Identities = 311/446 (70%), Gaps = 8/446 (2%) Strand=Plus/Minus Query 215837 CACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCA 215896 ||||||||||| || |||||||| ||||| || || | ||| || ||||| ||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 215897 CTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTAC 215956 | || || ||| | | ||||| || || || || | |||| || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 215957 AAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGC 216016 | || || |||||||||||||| | || || |||||||| || ||||| ||||| || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 216017 CTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTTGCAG 216074 ||||||||||||| || ||||||| | || | |||| || |||||| | | | Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTC--TCATTCTTTACATTTCTTCTTAGTTG 12967 Query 216075 CATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACC 216134 | | ||||| | |||| ||| ||| | | ||| | |||||||| || | || Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907 Query 216135 TTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTT 216194 | ||||| ||||| |||||||| ||||| || || ||| || ||| || Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT----ATT 12851 Query 216195 GGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTC 216254 |||| || || ||||| | || |||||||||||||| ||||| || ||||| |||| Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791 Query 216255 ACAACTTCCCATTAGACTTGGCTGCT 216280 | ||||||| ||||| | |||||| Sbjct 12790 ATAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 176 bits (194), Expect = 7e-39 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713 || |||||| | |||||||| | |||| || || || ||||| | ||||| ||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773 || ||| | | || ||| | ||||| || || ||||||| |||||| || ||||| Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833 ||||| || ||||||| |||| |||| |||||| ||||||||||||| || ||||||||| Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 || ||||||||||| || | |||||| ||||| || || | ||| ||| ||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 215894 TC 215895 || Sbjct 7016 TC 7015 >seq59 Length=339703 Score = 174 bits (192), Expect = 2e-38 Identities = 194/259 (75%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || ||||||| |||||| || ||| | ||||| || ||||||| |||| |||| ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 |||||||||||||| || ||||||||||| ||||||||| | || |||||||| ||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 215867 GGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACA 215926 || || | ||| || ||||| ||||| | || || || | | || || || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 215927 ACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAAC 215986 || || | |||||| || | ||||||| ||| || |||||||| || || || || Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 215987 ATCGTAGCTGCACACGGTT 216005 || |||||| | || |||| Sbjct 52549 ATTGTAGCTACTCATGGTT 52567 >seq29420 Length=7120 Score = 127 bits (140), Expect = 3e-24 Identities = 244/360 (68%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 215407 TGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGG 215466 ||| ||||| || ||||| || || || | || || ||| |||| ||| | | | || Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 215467 TAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTA 215526 ||||| || |||||||||| || | || | ||| || || || || ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 215527 CCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACT 215586 || || |||||||| ||| | ||||| |||||| | ||||||||||| |||| | || Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 215587 GGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTC 215646 | | || |||||| | ||||| | || ||| || | ||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 215647 TTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGC 215706 || | | | |||||| | |||||||| |||||| || || | ||||| | ||||| Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 215707 CTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACT 215766 | | | ||| | | || ||| | ||||| || || ||||||| |||||| || Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq8630 Length=23577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 82/99 (83%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTA-GCTGCACACGGTTACTT 216009 |||||||| || || |||||||||||||| || || |||||| ||||| || ||||| || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 216010 TGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 |||||| ||||||||||||| || ||||||||| || Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTC 7595 >seq4835 Length=43218 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| || || |||||||||||||| || || ||||||||||| || ||||| ||| Sbjct 9059 GGTTACAGATTTGGTCAAGAGGAGGAAACTTAGAATATCGTAGCTGCTCATGGTTATTTT 9118 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTC 216048 || | ||||||||||||| || ||||||||| || Sbjct 9119 GGCAGATTCATCTTCCAATATGCTAGTTTCAACAAATC 9156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741471735529120