Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq5412 324 2e-83 seq8546 241 2e-58 seq25216 179 5e-40 seq29420 158 1e-33 seq59 156 5e-33 seq3927 147 3e-30 seq8630 93.3 5e-14 >seq5412 Length=31808 Score = 324 bits (358), Expect = 2e-83 Identities = 492/695 (71%), Gaps = 14/695 (2%) Strand=Plus/Minus Query 181840 GGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCT 181898 ||||||| || ||||||| || || | ||| | ||||| ||| || || || | || Sbjct 15283 GGTTTGGCGTTTTGATGATTCCTACCTTATTGACCGCAAC-ATCCGTATTTATTATAGCC 15225 Query 181899 TTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTC 181958 ||| | || || ||||| || ||||| || ||||| || ||||| || ||| || || Sbjct 15224 TTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTTTGGATCTCTT 15165 Query 181959 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTT 182018 | || || ||||| || ||||||||||| || | | | | || || ||| | Sbjct 15164 CTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCTGCTATAGGTTTG 15105 Query 182019 CACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCT 182078 ||||| || ||||| ||||||||||| || ||||||| ||| | || || |||||||| Sbjct 15104 CACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCA 15045 Query 182079 TTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACGTGAG 182135 | | || ||||||| |||||| | | || | || || | ||||||| |||||| Sbjct 15044 TATGAGCTAATTGTTTTTCACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAG 14988 Query 182136 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCA 182195 ||||||||| || ||| | |||||||| || ||||| ||| || || || || || Sbjct 14987 TGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTATTCAGCCCCT 14928 Query 182196 GTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGAT 182255 || || | || ||||||| ||||| |||| || | ||| |||| || || || Sbjct 14927 GTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGCTTTTCTAAT 14868 Query 182256 GCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCAC 182315 | ||||| || ||||| || || || ||||||| ||| | || ||||| ||||||||| Sbjct 14867 GGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 14808 Query 182316 AACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTG 182375 ||||| |||||||| || || |||||||| || ||||| |||||||||| || | || Sbjct 14807 AACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGACGGCTACCTA 14748 Query 182376 TTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAA 182435 || || ||| ||||||||||| || || | || | || || || || | Sbjct 14747 TTCAG------GCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACCACAGAAAAT 14694 Query 182436 GAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCA 182495 || || || | ||||||| | | |||||||| |||||||| ||||| ||||| || Sbjct 14693 GAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAATATCGTAGCT 14634 Query 182496 GCCCATGGCTACTTCGGTCGTTTGATCTTCCAATA 182530 || ||||| || || || || || ||||||||||| Sbjct 14633 GCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 182644 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATG 182703 |||| |||||||| || | ||||| |||| |||||||| |||| |||||||| ||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 182704 TATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 182763 | | ||||| || ||||||||||||||||||||||| ||||| || | ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 182764 CACTAGATCTTGCTGC 182779 | || || || || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq8546 Length=31398 Score = 241 bits (266), Expect = 2e-58 Identities = 320/444 (72%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 182337 CACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCT 182396 |||||||| || ||||| ||||||||||| || || | || |||| ||||| |||||| Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 182397 TTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTAC 182456 ||||| || ||| | || | || || || || | | || || | |||||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATAAATCCGCTAATGAAGGTTAC 13085 Query 182457 AAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGT 182516 | || |||||||| || || || | || || || || || ||||| || || || || Sbjct 13084 AGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 13025 Query 182517 TTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCA 182576 || ||||||||||| || |||||| | || | ||| || || |||||| | | ||| Sbjct 13024 TTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTGCT 12965 Query 182577 TGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTC 182636 |||||||| || || || ||||| || | | ||| | || |||||||| | ||| Sbjct 12964 TGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCCTA 12905 Query 182637 AACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGG 182696 ||||| ||||| |||||||| || | ||||| |||| |||||||| ||| |||| Sbjct 12904 AACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA----TTGG 12849 Query 182697 GCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACAC 182756 || ||| | | ||||| ||| ||||||||||||||||||||||| ||||| || || Sbjct 12848 GCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 12789 Query 182757 AACTTCCCACTAGATCTTGCTGCT 182780 ||||||| ||||| || |||||| Sbjct 12788 AACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 179 bits (198), Expect = 5e-40 Identities = 192/254 (76%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 182154 TTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCT 182213 || |||||||| || ||||| | | || || || ||||| || || || || ||||| Sbjct 7256 TTTGGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCT 7197 Query 182214 GTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATC 182273 || ||||| |||| || | |||||||| || || |||| ||||| || ||||| Sbjct 7196 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATT 7137 Query 182274 TCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCC 182333 || || || ||||||| ||| | || ||||| ||||||||||||| |||||||| || Sbjct 7136 TCTGGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCA 7077 Query 182334 TTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGT 182393 || |||||||| || |||| ||||||||||| || || || || ||||| ||||| ||| Sbjct 7076 TTTCACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 7017 Query 182394 TCTTTGGTTACATC 182407 |||||||| || || Sbjct 7016 TCTTTGGTAACCTC 7003 >seq29420 Length=7120 Score = 158 bits (174), Expect = 1e-33 Identities = 254/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 181908 GCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGT 181967 || ||||| || ||||| || ||||| || ||||| || |||| || || | | || Sbjct 3416 GCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGGA 3475 Query 181968 AACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTAC 182027 ||||| || |||||||||| || | || | || || || ||| | ||||| || Sbjct 3476 AACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTAT 3535 Query 182028 CCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTG 182087 ||||| ||||||||||| || ||||||| ||| | || || |||||||||| | || Sbjct 3536 CCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTA 3595 Query 182088 GTTGTTTTCCACTTCCTGATCGGCATCTACGC---CTACATGGGACGTGAGTGGGAACTT 182144 |||||| |||||| | | || | || || |||||||| ||||||||||||||| Sbjct 3596 AATGTTTTGCACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACTT 3652 Query 182145 TCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCA 182204 || ||| | |||||||| || ||||| ||| || || || | ||| || || || Sbjct 3653 AGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCT 3712 Query 182205 GCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCC 182264 || || || | ||||| |||| || | |||||||| || || |||| ||||| Sbjct 3713 GCTACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCT 3772 Query 182265 CT 182266 || Sbjct 3773 CT 3774 >seq59 Length=339703 Score = 156 bits (172), Expect = 5e-33 Identities = 190/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 182245 CGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCC 182304 |||| || |||| ||||| || ||| | || || || ||||||| ||| | || |||| Sbjct 52307 CGTTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCC 52366 Query 182305 AAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCG 182364 | |||||||||||||| |||||||| || || |||||||| | ||||| |||||||||| Sbjct 52367 ATGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCG 52426 Query 182365 GTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGA 182424 | || || || || |||| ||||| ||||||||||| || || | | | || | Sbjct 52427 GCGGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAA 52486 Query 182425 CGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATA 182484 | || || | || || || | ||||||| ||| |||||||| |||||||| |||| Sbjct 52487 CCACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATA 52546 Query 182485 ACATCGTTGCAGCCCATGG 182503 | || || || | ||||| Sbjct 52547 ATATTGTAGCTACTCATGG 52565 >seq3927 Length=49767 Score = 147 bits (162), Expect = 3e-30 Identities = 184/251 (73%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 183469 TGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTT 183528 |||| |||||| || ||||| || || |||| || || ||||| ||| | || || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 183529 GAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATT 183588 ||||||||||| | || | || ||||| ||||| || || || | |||||| ||| Sbjct 26067 GAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAATT 26126 Query 183589 GCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCA 183648 || ||||||| || || || || |||||||| ||||||||| ||||||||||| Sbjct 26127 GCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCG 26186 Query 183649 CCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAAC 183708 |||||||| || |||||| | || || ||||| | | || |||| || || || || Sbjct 26187 CCTAGTTTTGGTGTAGCATCTAT-ATTCGATTCATCCTCTTTTTTCAAGGGTTTCATAAT 26245 Query 183709 TGGACGTTAAA 183719 ||||| || || Sbjct 26246 TGGACATTGAA 26256 >seq8630 Length=23577 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/133 (76%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTT-GCAGCCCATGGCTACTT 182509 |||||||| || |||||||| || || || || || ||||| || || ||||| || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 182510 CGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 182569 ||||| || ||||||||||| || |||||||| || ||||| || || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 182570 TGCTGCATGGCCT 182582 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608732378757200