Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fagopyrum_20esculentum_20[genbank_20GCA_5F001661195.1_202016-06-07] 387,594 sequences; 1,177,687,305 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq5412 392 4e-104 seq29420 271 9e-68 seq8546 217 2e-51 seq25216 183 3e-41 seq59 134 2e-26 seq3927 132 5e-26 seq8630 87.8 2e-12 seq8848 82.4 9e-11 >seq5412 Length=31808 Score = 392 bits (434), Expect = 4e-104 Identities = 473/644 (73%), Gaps = 6/644 (1%) Strand=Plus/Minus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| || ||||| |||||||| || || || ||||||||||||||||||||||| Sbjct 15236 TTTATTATAGCCTTCATTGCTGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 15177 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAAC 164976 || ||||| | ||||| ||||| || ||||||||||| | ||| | ||| | Sbjct 15176 TTTGGATCTCTTCTTTACGGAAACAATATTATCTCTGGTGCCATTATTCAGACTTTTGCT 15117 Query 164977 GCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTAC 165036 || || || | ||||| ||||| || |||||||||||| | | ||||||||||| ||| Sbjct 15116 GCTATAGGTTTGCACTTTTATCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATAC 15057 Query 165037 AACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATG 165096 || |||||||| || || | |||| || |||||| | | ||||||||||| |||||| Sbjct 15056 AATGGTGGTCCATATGAGCTAATTGTTTTTCACTTCTTACTTGGTGTAGCTTGTTACATG 14997 Query 165097 GGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATAT 165156 ||||||||||||||||| || ||| || |||||||| ||||||||| || || ||| Sbjct 14996 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGTTGTTGCGTAT 14937 Query 165157 AGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGT 165216 || ||||| || ||||| | || |||||| || |||| || | ||| |||| || Sbjct 14936 TCAGCCCCTGTTGCGACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGC 14877 Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 || ||| ||||||||||||| || || ||||||||||| |||| ||| | || ||||| Sbjct 14876 TTTTCTAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 14817 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 165336 || || || ||||| |||||||| || || |||||| | ||||| ||||| ||||||| Sbjct 14816 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGAC 14757 Query 165337 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACA 165396 || | || ||| | |||||| | | || || || | || | || || Sbjct 14756 GGCTACCTATTC------AGGCATGGTTCTTTGGTAACCTCGAGTTTGATCAGGGAAACC 14703 Query 165397 ACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAAC 165456 || |||| || | || | ||||| | | |||| ||||| |||||||| ||||| Sbjct 14702 ACAGAAAATGAATCTGCTAATGAAGGTTACAGGCTTGGTCAAGAGGAAGAGACTTATAAT 14643 Query 165457 ATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATA 165500 ||||| ||||| || || || || || || | || |||||||| Sbjct 14642 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 165614 TCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACG 165673 |||| |||||||| ||| | ||||||||||| | || |||||||||||| Sbjct 14596 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 14537 Query 165674 TTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCC 165733 || | ||||| || || |||||||||||||||||||| ||||| |||| ||||||| Sbjct 14536 TTATTAACCGCACTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCCTAACTTCC 14477 Query 165734 CCCTCGACCTCGCTGC 165749 | |||||||| || || Sbjct 14476 CTCTCGACCTAGCAGC 14461 >seq29420 Length=7120 Score = 271 bits (300), Expect = 9e-68 Identities = 276/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 164877 TGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGG 164936 |||||| || || || ||||||||||||||||||||||| | || ||||| | |||| Sbjct 3415 TGCTCCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTCACGG 3474 Query 164937 TAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTA 164996 ||||| || |||||||||| | ||||| ||||| || || || | ||||| || Sbjct 3475 AAACAATATTATCTCTGGTGACATTATTCCGACTTCTGCTGCTATAGGTTTGCACTTTTA 3534 Query 164997 TCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTT 165056 ||| || |||||||||||| | | ||||||||||| ||||| ||||||||||| || | Sbjct 3535 TCCAATATGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCT 3594 Query 165057 GGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTC 165116 ||| || |||||| | | ||||||||||| ||||||||||||||||||||||| Sbjct 3595 AAATGTTTTGCACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAG 3654 Query 165117 TTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGC 165176 || ||| || |||||||| ||||||||| || || ||| | ||||| || ||||| Sbjct 3655 TTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCGTATTCAGTTCCTGTTGCGGCTGC 3714 Query 165177 TGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCT 165236 | | | ||||| || |||| || | |||||||| || || ||||||||||||||||| Sbjct 3715 TACTACTATTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCT 3774 >seq8546 Length=31398 Score = 217 bits (240), Expect = 2e-51 Identities = 319/446 (72%), Gaps = 8/446 (2%) Strand=Plus/Minus Query 165307 CACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGT 165366 |||||| | ||||| ||||| |||||||| || || | ||| || ||||||||| | Sbjct 13204 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCATATTCAGTGTTATGCATGGTTCT 13145 Query 165367 CTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAG--AACTACGGTT 165424 | || || || | || | || || || |||| | | | || | || | |||| Sbjct 13144 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA-ATAAA-TCCGCTAATGAAGGTT 13087 Query 165425 ATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTC 165484 | | ||||| ||||| || || || | || || || ||||| || || || || || | Sbjct 13086 ACAGATTTGGTCAAGAGGAGGAAACTAAGAATATTGTAGCTGCTCATGGTTATTTTGGCC 13027 Query 165485 GTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAG 165544 | |||| |||||||| || |||||| |||| | ||| | || |||||| | | | Sbjct 13026 GATTCATCTTCCAATATGCTAGTTTCAACGATTCTCATTCTTTACATTTCTTCTTAGTTG 12967 Query 165545 CATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACC 165604 | ||||||||||| ||||| ||||| ||| || | ||| |||| || |||||||| | || Sbjct 12966 CTTGGCCTGTAGTAGGTATATGGTTTACTACTTTAGGTATTAGTACTATGGCATTTATCC 12907 Query 165605 TGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTT 165664 | ||||| ||||| |||||||| ||| | ||||||||||| | || || || Sbjct 12906 TAAACGGCTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT---TA-TT 12851 Query 165665 GGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTC 165724 |||| || || | ||||| ||| || |||||||||||||||||||| ||||| |||| Sbjct 12850 GGGCCGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 12791 Query 165725 ACAACTTCCCCCTCGACCTCGCTGCT 165750 | ||||||| || ||||| |||||| Sbjct 12790 ATAACTTCCATCTAGACCTAGCTGCT 12765 >seq25216 Length=8180 Score = 183 bits (202), Expect = 3e-41 Identities = 182/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 165127 GGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTT 165186 |||||||| ||||||||| | || ||| || ||||| || |||||| | || ||| Sbjct 7253 GGTATGCGCCCTTGGATTGCTATTGCGTATTCAGCTCCTGTTGCGGCTGCTACTGCTGTT 7194 Query 165187 TTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCT 165246 ||| || |||| || | |||||||| || || ||||||||||||||||| || || ||| Sbjct 7193 TTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCT 7134 Query 165247 GGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTC 165306 |||||||| |||| ||| | || ||||| | || || ||||| |||||||| || || Sbjct 7133 GGTACTTTCAACTTCATGATTGTATTCCAGTCTGAGCACAACATCCTTATGCACCCATTT 7074 Query 165307 CACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 |||||| | ||||| | ||| |||||||| || || || ||| |||||||||||| Sbjct 7073 CACATGTTAGGCGTAGATGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 7018 >seq59 Length=339703 Score = 134 bits (148), Expect = 2e-26 Identities = 184/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 || ||||||||||||||||| || | ||||||||||| |||| ||| | || ||||| Sbjct 52309 TTTTCTGATGGTATGCCTCTAGGAGTTTCTGGTACTTTCAACTTCATGATTGTATTCCAT 52368 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 165336 || || || ||||| |||||||| || || |||||| | |||| ||||| |||||||| Sbjct 52369 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAAGCGTAGCTGGTGTATTCGGC 52428 Query 165337 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACA 165396 || || || ||| || ||||||||| | | || || || | | | || || Sbjct 52429 GGCTCCCTATTCAGTGTTATGCATGGTTCTTTGGTAACCTCGAGTTTGATTAGGGAAACC 52488 Query 165397 ACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAAC 165456 || |||| || | || | ||||| | |||||| ||||| |||||||| ||||| Sbjct 52489 ACAGAAAATGAATCTACTAATGAAGGTTACAGGTTTGGTCAAGAGGAAGAGACTTATAAT 52548 Query 165457 ATCGTCGCTGCCCACGG 165473 || || ||| | || || Sbjct 52549 ATTGTAGCTACTCATGG 52565 >seq3927 Length=49767 Score = 132 bits (146), Expect = 5e-26 Identities = 183/252 (73%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 166449 TGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTT 166508 ||| | |||||||||||||| || ||||||| ||||| ||||| ||| | || || ||| Sbjct 26007 TGGACTTTTGTTGCTCTCCATGGCGCTTTTGGACTAATAGGTTTTATGTTACGTCAATTT 26066 Query 166509 GAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTAT 166567 ||| | ||||| ||| || | || || || |||||||| || || | |||||| || Sbjct 26067 GAACTTGCTCGATCT-GTTCAATTGCGACCTTATAATGCAATAGCATTATTTGGTCCAAT 26125 Query 166568 TGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGC 166627 ||| | || ||| || ||||| || || || || ||||| || ||||||| || || Sbjct 26126 TGCCATTTTTGTTTCGGTGTTTCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGC 26185 Query 166628 TCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAA 166687 || ||| || || || | || || |||||| |||| || ||||||| || || || Sbjct 26186 GCCTAGTTTTGGTGTAGCATCTATATT-CGATTCATCCTCTTTTTTCAAGGGTTTCATAA 26244 Query 166688 CTGGACACTGAA 166699 |||||| |||| Sbjct 26245 TTGGACATTGAA 26256 >seq8630 Length=23577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 165421 GGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGT-CGCTGCCCACGGGTACTT 165479 ||||| || ||||| ||||| || || || || || ||||| |||||| || || || || Sbjct 7497 GGTTACAAATTTGGTCAAGAGGAGGAAACTTAGAATATCGTACGCTGCTCATGGTTATTT 7556 Query 165480 CGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 165539 ||||| |||| |||||||| || ||||||||||| ||||| | || ||||| | Sbjct 7557 TGGTCGATTCATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTATT 7616 Query 165540 CGCAGCATGGCCT 165552 || || |||||| Sbjct 7617 AGCCGCTTGGCCT 7629 >seq8848 Length=70292 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 52432 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 52491 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 52492 TACCTGACGCGTT 52504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560929905698560